Prupe.1G509400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
41982764 .. 41983941
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G509400.1

Sequence Viewer

Length: 252 bp
ATGTCGACGGTAGGTTATGGTTTTGCTGAAGCATATGTGCTCAGAGGCCTCCACAAGAAGAAGCTGAAGATGGAGCAAGAAGAAGAAAGAGCCAAGCTGGGCAGAGCTGAATCTGAAATTGGTCAGCCCAGTGGTTGTTTGTTTCGGGTGATGAAGAAAGTCCATCCAAGCAATGCTCAGAGTCAAAGGGCTTGTTCAGCTGAAACAGAAGAAACTGGAGAAGTTGGGGCTTTGAACCAGAAAGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.2

Weight (kDa)

9.03

Isoelectric Point (pI)

57.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 48, 86
AgsI TTSAA 1 cut(s) 235
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 4 cut(s) 64, 97, 107, 200
AluI AGCT 4 cut(s) 64, 97, 107, 200
Alw21I GWGCWC 1 cut(s) 42
AoxI GGCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 2 cut(s) 64, 171
BmrI ACTGGG 1 cut(s) 123
BmuI ACTGGG 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 129, 220
Bse3DI GCAATG 1 cut(s) 178
BseGI GGATG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 55, 191
BseNI ACTGG 2 cut(s) 129, 220
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 42
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 42
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 54, 190
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 2 cut(s) 129, 220
Bst4CI ACNGT 1 cut(s) 10
BstDEI CTNAG 2 cut(s) 41, 177
BstF5I GGATG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 136
CviJI RGCY 9 cut(s) 48, 64, 92, 97, 107, 127, 191, 200, 230
CviKI_1 RGCY 9 cut(s) 48, 64, 92, 97, 107, 127, 191, 200, 230
DdeI CTNAG 2 cut(s) 41, 177
Eco147I AGGCCT 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 48, 86
FaiI YATR 3 cut(s) 18, 34, 36
FauNDI CATATG 1 cut(s) 34
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 110, 181
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 44, 115, 180
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 41, 177
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 83, 142, 201
MboII GAAGA 6 cut(s) 70, 79, 92, 95, 166, 221
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 117
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 2 cut(s) 38, 59
MspA1I CMGCKG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 34
PceI AGGCCT 1 cut(s) 48
PfeI GAWTC 1 cut(s) 110
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 200
SalI GTCGAC 1 cut(s) 4
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 16, 66, 99, 109, 202
SgeI CNNG 9 cut(s) 67, 89, 106, 110, 141, 158, 180, 204, 228
Sse9I AATT 1 cut(s) 117
SseBI AGGCCT 1 cut(s) 48
StuI AGGCCT 1 cut(s) 48
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.