RchiOBHm_Chr7g0240191

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
66164546 .. 66165067
522 bp
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UTR
Exon/CDS
Intron
PRQ21530

Sequence Viewer

Length: 216 bp
ATGTCTACGGCAGGTTATGATCTTGCTGAAGCATGCGTGCTGCGAGATAGCCACAGAAAGAAGGTGAAGATGGAAAAAGAAAAGGCCAAGTCGGGAACACCTCATGCATCTGAATCAGTAAAGTCTAGTTGTTGCTTATTCAGGGGATTGAAGAAAATCCATGCAAGCAATTCAAAGAGGACTTGCTCAGCTGAAAATGCAGAAGCTGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.64

Weight (kDa)

9.39

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2
AccI GTMKAC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 151, 174
AluBI AGCT 2 cut(s) 191, 206
AluI AGCT 2 cut(s) 191, 206
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 76
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 24
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 42
BmsI GCATC 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 187
BseMII CTCAG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 86
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 19
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 2
BssMI GATC 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 34, 38, 166
BstDEI CTNAG 1 cut(s) 187
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 86
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 3 cut(s) 34, 38, 166
CaiI CAGNNNCTG 1 cut(s) 206
CviAII CATG 3 cut(s) 33, 104, 161
CviJI RGCY 4 cut(s) 51, 86, 191, 206
CviKI_1 RGCY 4 cut(s) 51, 86, 191, 206
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 109
FaeI CATG 3 cut(s) 36, 107, 164
FaiI YATR 4 cut(s) 18, 34, 105, 162
FatI CATG 3 cut(s) 32, 103, 160
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 3 cut(s) 36, 107, 164
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 107, 164, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 187
Hsp92II CATG 3 cut(s) 36, 107, 164
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 127, 192
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 116
MaeI CTAG 1 cut(s) 126
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 79, 163
MluCI AATT 1 cut(s) 169
MnlI CCTC 2 cut(s) 111, 171
Mph1103I ATGCAT 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 36, 107, 164
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 191
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 19
SetI ASST 5 cut(s) 16, 66, 103, 193, 208
SfaNI GCATC 1 cut(s) 116
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 126
TasI AATT 1 cut(s) 169
TfiI GAWTC 1 cut(s) 113
TseI GCWGC 1 cut(s) 40
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.