Rroxscaffold_3G00220300

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
2520242 .. 2520478
237 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00220300.1

Sequence Viewer

Length: 237 bp
ATGTCGATGGCTACCTCTGGTTTTGCTGAAGCATATGTGATGAGAGACCTGCACAAGAAGAAGCTGAAGAAGGAAGAAGAAGAAGAAAGGGCCAGGTTGGGCATGGCTAGATCCGAAACAGCCAACTCCGGTGGTTGTTTCTTCTGGGTTATGAAGAAAGTGCATCCAAGCAATCCTCAGAGGACTAATTGTTCAGCACAAGTTGGGGGACTTCCGATCAATAAGTTTGATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

9.56

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AclWI GGATC 1 cut(s) 105
AcuI CTGAAG 2 cut(s) 48, 86
AjnI CCWGG 1 cut(s) 92
AloI GAACNNNNNNTCC 2 cut(s) 175, 207
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 128
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 110, 216, 229
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 39
BssMI GATC 3 cut(s) 110, 216, 229
Bst2UI CCWGG 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 3 cut(s) 113, 219, 232
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 110, 216, 229
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 90
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 11, 64, 92, 107, 122
CviKI_1 RGCY 5 cut(s) 11, 64, 92, 107, 122
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 112, 218, 231
DpnII GATC 3 cut(s) 110, 216, 229
Eco31I GGTCTC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 48, 86
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 34, 36, 104, 152
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 102
FauNDI CATATG 1 cut(s) 34
FokI GGATG 1 cut(s) 150
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 106
HpaII CCGG 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 115, 180, 216
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 52, 163
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 3 cut(s) 110, 216, 229
LpnPI CCDG 6 cut(s) 3, 62, 79, 106, 130, 142
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 108
MalI GATC 3 cut(s) 112, 218, 231
MboI GATC 3 cut(s) 110, 216, 229
MboII GAAGA 8 cut(s) 70, 79, 86, 89, 92, 95, 133, 166
MflI RGATCY 1 cut(s) 110
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 25, 174, 186
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 34
NdeII GATC 3 cut(s) 110, 216, 229
NlaIII CATG 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspPI GGNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 110
Sau3AI GATC 3 cut(s) 110, 216, 229
Sau96I GGNCC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 94
SetI ASST 4 cut(s) 17, 51, 66, 98
SfaNI GCATC 1 cut(s) 172
Sse9I AATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 92
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.