Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Reverse (-)

378783 .. 381847

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATAGGATGGGAAGATGTTTACAAGGTGGTGGTAGCCATGGTACCACTCTACTTTGCACTCATTTTAGGGTTTGGCTCCGTCAGGTGGTGGGGAATCTTCACTCCTGAGCAGTGCGGCGCTATCAACCGCTTCGTCTGCTTCTTCACCCTCCCACTCTTCACCTTCGAGTTCACCGCTCACGTCGATCCTTTCGAGTGGAACTACCGCTTCATCGCGGCGGATGCCATTTCCAAGCTCATCATCGTGGTTGTGCTAGCGTTTTGGGCAAAGTGTAGTAGCAAGGGAAGCTATAGTTGGTCAATAACAAGCTTCTCTCTCTGCACTTTAACTAATTCACTTGTCGTTGGAGTTCCCCTGATGAAAGCCATGTACGGCCCGATGGCTGTTGATCTTGTAGTTCAATCTTCGGTGGTGCAAGCTATCATATGGCTCACCGTGCTTCTGTTCGTCTTGGAATTCCGACGGACGGGGCTAGACATCTCGAGTAATGATACAAGGGTTCAATCAGTTGAACTTCAAGGCGTGAAAGATGTAGAGGGCCTGAACCAGAGCACTGTGGCCAATTCACCTTCTTATTATTACTGGAGTTTGCTGAAGGGTGTGTGGCTCAAACTTGGGATGAATCCCAACTCTTATGCCGTTTTCATTGGAATTGCTTGGGCTTTTATAGCAAACAGGTGGCATATTGAGTTGCCAAGCATTATGGAGGGATCTGTTTTGATCATGTCCAAGGCTGGTACCGGAACTGCCATGTTTAGCATGGGTATCTTCATGGCACTGCAAGAGAAATTCGTAGCTTGTGGAACAAGCCTAACGATAATAGGGATGGTTTTGAGGTTCATTGCCGGACCGGCAGCCATGGCTATCGGATGTATCGCTGTTGGCTTGCATGGTGATGTTTTACGTGTCGCCATCATTCAGGCAGCATTGCCCCAATCGATTACCTCCTTCATATTTGCCAAAGAATATGGACTTCATGCAGACGTCTTGAGTACTGCAGTGATATTTGGAATGTTGGTGTCCCTTCCAGTGTTGATCGGCTACTATGCAGTTTTAGAATTTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

358

Amino Acids

39.27

Weight (kDa)

6.51

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 350	3.2e-78	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	990
Acc65I	GGTACC	2 cut(s)	43, 740
AccB1I	GGYRCC	2 cut(s)	43, 740
AccBSI	CCGCTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	218
AciI	CCGC	6 cut(s)	117, 130, 177, 208, 218, 221
AclWI	GGATC	2 cut(s)	182, 721
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	458, 791, 1061
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	987
AfaI	GTAC	4 cut(s)	45, 374, 742, 997
AfiI	CCNNNNNNNGG	2 cut(s)	87, 469
AflIII	ACRYGT	1 cut(s)	907
AgsI	TTSAA	4 cut(s)	404, 506, 515, 521
AjiI	CACGTC	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	5 cut(s)	238, 291, 312, 422, 800
AluI	AGCT	5 cut(s)	238, 291, 312, 422, 800
Alw21I	GWGCWC	1 cut(s)	557
AlwI	GGATC	2 cut(s)	182, 721
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	3 cut(s)	376, 541, 561
ApeKI	GCWGC	2 cut(s)	857, 926
ApoI	RAATTY	3 cut(s)	458, 791, 1061
Asp718I	GGTACC	2 cut(s)	43, 740
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	377, 541, 851
AsuHPI	GGTGA	6 cut(s)	139, 154, 166, 427, 561, 908
AsuNHI	GCTAGC	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	851
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	43, 740
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	2 cut(s)	869, 938
BccI	CCATC	4 cut(s)	3, 376, 823, 923
BceAI	ACGGC	2 cut(s)	391, 626
BclI	TGATCA	1 cut(s)	723
BfaI	CTAG	2 cut(s)	257, 476
BfmI	CTRYAG	2 cut(s)	292, 999
BfoI	RGCGCY	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	854
BisI	GCNGC	4 cut(s)	118, 219, 858, 927
BlsI	GCNGC	4 cut(s)	119, 220, 859, 928
BmcAI	AGTACT	1 cut(s)	997
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	484
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	377, 541, 851
BmiI	GGNNCC	3 cut(s)	45, 79, 742
BmsI	GCATC	1 cut(s)	214
BmtI	GCTAGC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	1012
Bsa29I	ATCGAT	1 cut(s)	941
BsaAI	YACGTR	1 cut(s)	908
BsaHI	GRCGYC	1 cut(s)	987
BsaJI	CCNNGG	3 cut(s)	39, 732, 861
BsaWI	WCCGGW	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 469
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	2 cut(s)	590, 1031
Bse3DI	GCAATG	2 cut(s)	843, 929
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	3 cut(s)	39, 732, 861
BseGI	GGATG	5 cut(s)	14, 229, 627, 834, 878
BseLI	CCNNNNNNNGG	2 cut(s)	87, 469
BseMI	GCAATG	2 cut(s)	843, 929
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	590, 1031
BseXI	GCAGC	2 cut(s)	869, 938
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	378, 543, 563
BshNI	GGYRCC	2 cut(s)	43, 740
BshVI	ATCGAT	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	744, 849, 854
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	2 cut(s)	87, 469
BsmFI	GGGAC	1 cut(s)	1009
BsnI	GGCC	3 cut(s)	378, 543, 563
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	5 cut(s)	187, 391, 713, 723, 1038
Bsp19I	CCATGG	2 cut(s)	39, 861
BspACI	CCGC	6 cut(s)	117, 130, 177, 208, 218, 221
BspANI	GGCC	3 cut(s)	378, 543, 563
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	941
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	45, 79, 742
BspMAI	CTGCAG	1 cut(s)	1003
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	182, 721
BspT107I	GGYRCC	2 cut(s)	43, 740
BsrBI	CCGCTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	843, 929
BsrFI	RCCGGY	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	590, 1031
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	39, 732, 861
BssMI	GATC	5 cut(s)	187, 391, 713, 723, 1038
BssNI	GRCGYC	1 cut(s)	987
BssT1I	CCWWGG	3 cut(s)	39, 732, 861
Bst4CI	ACNGT	2 cut(s)	439, 559
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	987
BstBAI	YACGTR	1 cut(s)	908
BstC8I	GCNNGC	3 cut(s)	258, 420, 890
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	39, 861
BstF5I	GGATG	5 cut(s)	14, 229, 627, 834, 878
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	5 cut(s)	190, 394, 716, 726, 1041
BstMBI	GATC	5 cut(s)	187, 391, 713, 723, 1038
BstMWI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 671, 854, 863
BstSFI	CTRYAG	2 cut(s)	292, 999
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	869, 938
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	941
BsuRI	GGCC	3 cut(s)	378, 543, 563
BsuTUI	ATCGAT	1 cut(s)	941
BtgI	CCRYGG	2 cut(s)	39, 861
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	5 cut(s)	14, 229, 627, 834, 878
BtsI	GCAGTG	3 cut(s)	119, 779, 1008
BtsIMutI	CAGTG	5 cut(s)	119, 555, 779, 1008, 1038
Cac8I	GCNNGC	3 cut(s)	258, 420, 890
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	853
Cfr13I	GGNCC	3 cut(s)	377, 541, 851
ClaI	ATCGAT	1 cut(s)	941
CpoI	CGGWCCG	1 cut(s)	851
Csp6I	GTAC	4 cut(s)	44, 373, 741, 996
CspI	CGGWCCG	1 cut(s)	851
CviAII	CATG	9 cut(s)	40, 370, 727, 754, 763, 775, 862, 893, 980
CviQI	GTAC	4 cut(s)	44, 373, 741, 996
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	189, 393, 715, 725, 1040
DpnII	GATC	5 cut(s)	187, 391, 713, 723, 1038
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	3 cut(s)	39, 732, 861
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	541
EcoRI	GAATTC	1 cut(s)	458
EcoT14I	CCWWGG	3 cut(s)	39, 732, 861
ErhI	CCWWGG	3 cut(s)	39, 732, 861
FaeI	CATG	9 cut(s)	43, 373, 730, 757, 766, 778, 865, 896, 983
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	9 cut(s)	39, 369, 726, 753, 762, 774, 861, 892, 979
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	723
Fnu4HI	GCNGC	4 cut(s)	118, 219, 858, 927
FokI	GGATG	5 cut(s)	21, 236, 634, 841, 885
Fsp4HI	GCNGC	4 cut(s)	118, 219, 858, 927
FspBI	CTAG	2 cut(s)	257, 476
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	4 cut(s)	118, 219, 858, 927
GsuI	CTGGAG	1 cut(s)	607
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	378, 543, 563
HapII	CCGG	3 cut(s)	744, 849, 854
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	987
Hin1II	CATG	9 cut(s)	43, 373, 730, 757, 766, 778, 865, 896, 983
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	96, 625
HpaII	CCGG	3 cut(s)	744, 849, 854
HphI	GGTGA	6 cut(s)	139, 154, 166, 427, 561, 908
Hpy166II	GTNNAC	2 cut(s)	22, 174
Hpy188I	TCNGA	2 cut(s)	464, 872
Hpy188III	TCNNGA	3 cut(s)	107, 484, 991
Hpy8I	GTNNAC	2 cut(s)	22, 174
Hpy99I	CGWCG	2 cut(s)	188, 468
HpyAV	CCTTC	5 cut(s)	175, 582, 592, 961, 1037
HpyCH4III	ACNGT	2 cut(s)	439, 559
HpyCH4IV	ACGT	3 cut(s)	183, 907, 987
HpyCH4V	TGCA	9 cut(s)	59, 324, 418, 784, 892, 983, 1001, 1052, 1069
HpyF10VI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 671, 854, 863
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	3 cut(s)	183, 907, 987
Hsp92I	GRCGYC	1 cut(s)	987
Hsp92II	CATG	9 cut(s)	43, 373, 730, 757, 766, 778, 865, 896, 983
HspAI	GCGC	1 cut(s)	120
KpnI	GGTACC	2 cut(s)	47, 744
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	5 cut(s)	187, 391, 713, 723, 1038
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	869, 938
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	257, 476
MaeII	ACGT	3 cut(s)	183, 907, 987
MalI	GATC	5 cut(s)	189, 393, 715, 725, 1040
MbiI	CCGCTC	1 cut(s)	179
MboI	GATC	5 cut(s)	187, 391, 713, 723, 1038
MboII	GAAGA	6 cut(s)	26, 91, 136, 151, 399, 763
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	6 cut(s)	334, 458, 565, 654, 791, 1061
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	328, 487
MnlI	CCTC	5 cut(s)	161, 532, 703, 831, 958
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	245, 897
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	3 cut(s)	744, 849, 854
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 671, 854, 863
NcoI	CCATGG	2 cut(s)	39, 861
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	5 cut(s)	187, 391, 713, 723, 1038
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	9 cut(s)	43, 373, 730, 757, 766, 778, 865, 896, 983
NlaIV	GGNNCC	3 cut(s)	45, 79, 742
PaeR7I	CTCGAG	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	96, 625
PkrI	GCNGC	4 cut(s)	119, 220, 859, 928
Ppu21I	YACGTR	1 cut(s)	908
PspN4I	GGNNCC	3 cut(s)	45, 79, 742
PspPI	GGNCC	3 cut(s)	377, 541, 851
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	1 cut(s)	713
RsaI	GTAC	4 cut(s)	45, 374, 742, 997
RsaNI	GTAC	4 cut(s)	44, 373, 741, 996
RseI	CAYNNNNRTG	2 cut(s)	245, 897
Rsr2I	CGGWCCG	1 cut(s)	851
RsrII	CGGWCCG	1 cut(s)	851
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	4 cut(s)	118, 219, 858, 927
Sau3AI	GATC	5 cut(s)	187, 391, 713, 723, 1038
Sau96I	GGNCC	3 cut(s)	377, 541, 851
ScaI	AGTACT	1 cut(s)	997
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	2 cut(s)	292, 999
Sfr274I	CTCGAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	484
SmiMI	CAYNNNNRTG	2 cut(s)	245, 897
SmlI	CTYRAG	2 cut(s)	484, 991
SmoI	CTYRAG	2 cut(s)	484, 991
Sse9I	AATT	6 cut(s)	334, 458, 565, 654, 791, 1061
SsiI	CCGC	6 cut(s)	117, 130, 177, 208, 218, 221
SspMI	CTAG	2 cut(s)	257, 476
StyI	CCWWGG	3 cut(s)	39, 732, 861
TaaI	ACNGT	2 cut(s)	439, 559
TaiI	ACGT	3 cut(s)	186, 910, 990
TaqI	TCGA	5 cut(s)	168, 186, 195, 485, 941
TasI	AATT	6 cut(s)	334, 458, 565, 654, 791, 1061
TatI	WGTACW	1 cut(s)	995
TauI	GCSGC	2 cut(s)	120, 221
TfiI	GAWTC	2 cut(s)	96, 625
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	5 cut(s)	119, 562, 786, 1008, 1038
TseI	GCWGC	2 cut(s)	857, 926
TspDTI	ATGAA	8 cut(s)	202, 377, 637, 638, 763, 832, 943, 968
TspGWI	ACGGA	2 cut(s)	70, 481
TspRI	CASTG	5 cut(s)	119, 562, 786, 1008, 1038
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	458, 791, 1061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XhoI	CTCGAG	1 cut(s)	484
XspI	CTAG	2 cut(s)	257, 476
ZraI	GACGTC	1 cut(s)	988
ZrmI	AGTACT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.