Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Forward (+)

30416377 .. 30418493

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G360300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGATAGGTTGGGGAGATGTTTACAAGGTGGTGGTGGCCATGATGCCACTCTACGTTGCCCTAATTCTAGGGTTTGGCTCTGTGAGGTGGTGGCGCATCTTCACTCCCGAGCAGTGTGGTGCAATCAACCGCTTTGTTTGCTTCTTCACTCTACCACTCTTCACATTTGAATTCACAGCTCATGTTGATCCTTACAAATGGAACTACCGCTTCATCGGTGCGGATGCCATCTCAAAGCTCATAATCGTGGCGGTGCTTGCGTTATGGGCCAAGTGTAGTAGCAAGGGAAGCTATAGTTGGTCCATCACAAGCTTCTCCTTGTGCACTTTGACAAATTCGCTTGTGGTAGGGGTACCCTTGATGAAAGCCATGTATGGTCAGGTAGCCGTTGATCTTGTTGTTCAATCATCGGTGGTGCAGGCTATCGTGTGGCTGACAATTCTTCTGTTCGTCTTAGAATTTCGACGAACGGGGTCGTTAGACATGCATATGATTTCGGGGACTAACACAAGTCAATCGGTGGAGCAAGGTGAAGGAGGGAAAGCGGTAGAGGGGTTGGCTGCAATGAGCACGATGAGCAGCAGTAGGCCTTCTTTCTGGTACTTGATGAAGGCTGTGTGGCTGAAACTTGGGATGAATCCCAACTCGTATGCGGTTTTCATAGGGATTGGATGGGCTTTTATATCAAGCAGGTGGCATATTGAGTTGCCAAGCATTATGGAAGGATCTGTTTTAATCATGTCAAAAGCTGGTACAGGCACTGCCATGTTTAGCATGGGTATCTTCATGGCACTGCAGGAAAAATTCGTGGCGTGCGGGACGAGCCTGACTATAATAGGGATGGTTTTGAGGTTTATTGCTGGACCAGCAGCCATGGCTATTGGCTCCATCGCTGTGGGCTTGCATGGTGATGTTTTACGTGTGGCCATCATTCAGGCAGCATTGCCGCAGTCCATTACCTCCTTCATATTTGCCAAAGAATACGGACTCCATGCAGAGGTGCTCAGTACAGCGGTGATATTTGGCATGATAGTGTCCCTTCCAGTGTTGATCGCTTACTATGCAGTTCTAGAATTTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

362

Amino Acids

39.44

Weight (kDa)

8.75

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	681
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	9 cut(s)	130, 208, 221, 251, 545, 653, 816, 947, 1013
AclWI	GGATC	2 cut(s)	182, 733
AcoI	YGGCCR	2 cut(s)	36, 924
AcsI	RAATTY	5 cut(s)	170, 334, 458, 803, 1073
AfaI	GTAC	4 cut(s)	354, 602, 754, 1009
AfiI	CCNNNNNNNGG	1 cut(s)	997
AflIII	ACRYGT	1 cut(s)	919
AgsI	TTSAA	2 cut(s)	170, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	5 cut(s)	179, 238, 291, 312, 749
AluI	AGCT	5 cut(s)	179, 238, 291, 312, 749
Alw21I	GWGCWC	3 cut(s)	326, 572, 1005
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	182, 733
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	4 cut(s)	36, 267, 587, 924
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	4 cut(s)	560, 579, 869, 938
ApoI	RAATTY	5 cut(s)	170, 334, 458, 803, 1073
Asp718I	GGTACC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	267, 300, 863
AsuHPI	GGTGA	3 cut(s)	542, 920, 1027
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	300, 863
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	2 cut(s)	38, 926
BanI	GGYRCC	1 cut(s)	352
Bbv12I	GWGCWC	3 cut(s)	326, 572, 1005
BbvI	GCAGC	4 cut(s)	547, 591, 881, 950
BccI	CCATC	6 cut(s)	236, 311, 666, 835, 896, 935
BceAI	ACGGC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	68, 1070
BfmI	CTRYAG	2 cut(s)	292, 794
BfuAI	ACCTGC	1 cut(s)	681
BisI	GCNGC	5 cut(s)	561, 580, 870, 939, 947
BlsI	GCNGC	5 cut(s)	562, 581, 871, 940, 948
Bme18I	GGWCC	2 cut(s)	300, 863
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	3 cut(s)	267, 300, 863
BmiI	GGNNCC	2 cut(s)	354, 886
BmsI	GCATC	3 cut(s)	33, 105, 214
BsaAI	YACGTR	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	873
Bsc4I	CCNNNNNNNGG	1 cut(s)	997
Bse1I	ACTGG	1 cut(s)	1043
Bse3DI	GCAATG	2 cut(s)	570, 941
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	4 cut(s)	229, 639, 677, 846
BseLI	CCNNNNNNNGG	1 cut(s)	997
BseMI	GCAATG	2 cut(s)	570, 941
BseMII	CTCAG	1 cut(s)	1018
BseNI	ACTGG	1 cut(s)	1043
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	547, 591, 881, 950
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	4 cut(s)	38, 269, 589, 926
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	3 cut(s)	326, 572, 1005
BsiHKCI	CYCGRG	1 cut(s)	107
BslFI	GGGAC	3 cut(s)	514, 832, 1021
BslI	CCNNNNNNNGG	1 cut(s)	997
BsmFI	GGGAC	3 cut(s)	514, 832, 1021
BsnI	GGCC	4 cut(s)	38, 269, 589, 926
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	326, 572, 1005
Bsp143I	GATC	4 cut(s)	187, 391, 725, 1050
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	9 cut(s)	130, 208, 221, 251, 545, 653, 816, 947, 1013
BspANI	GGCC	4 cut(s)	38, 269, 589, 926
BspCNI	CTCAG	1 cut(s)	1017
BspLI	GGNNCC	2 cut(s)	354, 886
BspMAI	CTGCAG	1 cut(s)	798
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	182, 733
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	570, 941
BsrI	ACTGG	1 cut(s)	1043
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	4 cut(s)	187, 391, 725, 1050
BssT1I	CCWWGG	1 cut(s)	873
Bst6I	CTCTTC	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	4 cut(s)	258, 420, 814, 902
BstDEI	CTNAG	2 cut(s)	454, 1004
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	4 cut(s)	229, 639, 677, 846
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	190, 394, 728, 1053
BstMBI	GATC	4 cut(s)	187, 391, 725, 1050
BstMWI	GCNNNNNNNGC	9 cut(s)	138, 257, 266, 288, 576, 822, 866, 875, 1061
BstNSI	RCATGY	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	292, 794
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	4 cut(s)	547, 591, 881, 950
BstX2I	RGATCY	1 cut(s)	725
BstXI	CCANNNNNNTGG	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	725
BsuRI	GGCC	4 cut(s)	38, 269, 589, 926
BtgI	CCRYGG	1 cut(s)	873
BtgZI	GCGATG	1 cut(s)	874
BtsCI	GGATG	4 cut(s)	229, 639, 677, 846
BtsI	GCAGTG	3 cut(s)	119, 759, 791
BtsIMutI	CAGTG	4 cut(s)	119, 759, 791, 1050
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	4 cut(s)	258, 420, 814, 902
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	267, 300, 863
Csp6I	GTAC	4 cut(s)	353, 601, 753, 1008
CviQI	GTAC	4 cut(s)	353, 601, 753, 1008
DdeI	CTNAG	2 cut(s)	454, 1004
DpnI	GATC	4 cut(s)	189, 393, 727, 1052
DpnII	GATC	4 cut(s)	187, 391, 725, 1050
EaeI	YGGCCR	2 cut(s)	36, 924
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	873
Eco147I	AGGCCT	1 cut(s)	589
Eco47I	GGWCC	2 cut(s)	300, 863
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	873
FaqI	GGGAC	3 cut(s)	514, 832, 1021
FauI	CCCGC	1 cut(s)	809
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	561, 580, 870, 939, 947
FokI	GGATG	4 cut(s)	236, 646, 684, 853
Fsp4HI	GCNGC	5 cut(s)	561, 580, 870, 939, 947
FspBI	CTAG	2 cut(s)	68, 1070
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	5 cut(s)	561, 580, 870, 939, 947
HaeIII	GGCC	4 cut(s)	38, 269, 589, 926
HhaI	GCGC	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	637, 987
HphI	GGTGA	3 cut(s)	542, 920, 1027
Hpy166II	GTNNAC	2 cut(s)	22, 324
Hpy188III	TCNNGA	2 cut(s)	107, 1070
Hpy8I	GTNNAC	2 cut(s)	22, 324
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	6 cut(s)	527, 600, 604, 716, 973, 1049
HpyCH4IV	ACGT	2 cut(s)	54, 919
HpyF10VI	GCNNNNNNNGC	9 cut(s)	138, 257, 266, 288, 576, 822, 866, 875, 1061
HpyF3I	CTNAG	2 cut(s)	454, 1004
HpySE526I	ACGT	2 cut(s)	54, 919
HspAI	GCGC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	4 cut(s)	187, 391, 725, 1050
LmnI	GCTCC	2 cut(s)	523, 890
Lsp1109I	GCAGC	4 cut(s)	547, 591, 881, 950
LweI	GCATC	3 cut(s)	33, 105, 214
MaeI	CTAG	2 cut(s)	68, 1070
MaeII	ACGT	2 cut(s)	54, 919
MalI	GATC	4 cut(s)	189, 393, 727, 1052
MboI	GATC	4 cut(s)	187, 391, 725, 1050
MboII	GAAGA	5 cut(s)	91, 136, 151, 434, 775
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	3 cut(s)	326, 572, 1005
MlsI	TGGCCA	2 cut(s)	38, 926
MluCI	AATT	7 cut(s)	63, 170, 334, 438, 458, 803, 1073
MluNI	TGGCCA	2 cut(s)	38, 926
MlyI	GAGTC	1 cut(s)	981
MnlI	CCTC	6 cut(s)	78, 530, 544, 843, 970, 991
Mox20I	TGGCCA	2 cut(s)	38, 926
Mph1103I	ATGCAT	1 cut(s)	489
MscI	TGGCCA	2 cut(s)	38, 926
MseI	TTAA	1 cut(s)	734
MslI	CAYNNNNRTG	6 cut(s)	245, 488, 764, 893, 909, 1031
Msp20I	TGGCCA	2 cut(s)	38, 926
MspA1I	CMGCKG	1 cut(s)	1013
MwoI	GCNNNNNNNGC	9 cut(s)	138, 257, 266, 288, 576, 822, 866, 875, 1061
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	4 cut(s)	187, 391, 725, 1050
NlaIV	GGNNCC	2 cut(s)	354, 886
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	637
PkrI	GCNGC	5 cut(s)	562, 581, 871, 940, 948
PleI	GAGTC	1 cut(s)	981
PpsI	GAGTC	1 cut(s)	981
Ppu21I	YACGTR	1 cut(s)	920
PspN4I	GGNNCC	2 cut(s)	354, 886
PspPI	GGNCC	3 cut(s)	267, 300, 863
PstI	CTGCAG	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	725
RsaI	GTAC	4 cut(s)	354, 602, 754, 1009
RsaNI	GTAC	4 cut(s)	353, 601, 753, 1008
RseI	CAYNNNNRTG	6 cut(s)	245, 488, 764, 893, 909, 1031
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	5 cut(s)	561, 580, 870, 939, 947
Sau3AI	GATC	4 cut(s)	187, 391, 725, 1050
Sau96I	GGNCC	3 cut(s)	267, 300, 863
SchI	GAGTC	1 cut(s)	981
SduI	GDGCHC	3 cut(s)	326, 572, 1005
SfaNI	GCATC	3 cut(s)	33, 105, 214
SfcI	CTRYAG	2 cut(s)	292, 794
SinI	GGWCC	2 cut(s)	300, 863
SmiMI	CAYNNNNRTG	6 cut(s)	245, 488, 764, 893, 909, 1031
Sse9I	AATT	7 cut(s)	63, 170, 334, 438, 458, 803, 1073
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	9 cut(s)	130, 208, 221, 251, 545, 653, 816, 947, 1013
SspMI	CTAG	2 cut(s)	68, 1070
StuI	AGGCCT	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	873
TaiI	ACGT	2 cut(s)	57, 922
TaqI	TCGA	1 cut(s)	463
TasI	AATT	7 cut(s)	63, 170, 334, 438, 458, 803, 1073
TatI	WGTACW	1 cut(s)	1007
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	4 cut(s)	119, 766, 798, 1050
TseI	GCWGC	4 cut(s)	560, 579, 869, 938
TspDTI	ATGAA	7 cut(s)	202, 377, 623, 649, 650, 775, 955
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	4 cut(s)	119, 766, 798, 1050
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	300, 863
XapI	RAATTY	5 cut(s)	170, 334, 458, 803, 1073
XbaI	TCTAGA	1 cut(s)	1069
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XspI	CTAG	2 cut(s)	68, 1070
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.