Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Reverse (-)

507752 .. 510742

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATAGGATGGGAAGATGTTTACAAAGTGGTGGTAGCCATGGCACCACTCTACTTTGCACTCATTTTAGGGTTTGGCTCCGTCAGGTGGTGGCACATCTTCACTCCTGAGCAGTGCGGCGCCATAAACCGCTTTGTTTGCTTCTTCACCCTCCCACTCTTCACGTTCGAATTCACTGCTCACGTCGATCCTTTCGAGTGGAACTACCGCTTCATCGCGGCCGATGCCATTTCCAAGCTCATAATCGTGGTTGTGCTCGCGTGTTGGGCAAAGTGTAGTAGCAAGGGAAGCTATAGTTGGTCAATAACAAGCTTCTCTCTCTGCACTTTAACTAATTCACTTGTCGTTGGAGTGCCCCTAATGAAAGCTATGTACGGCCCGATGGCTGTTGATCTGGTAGTTCAGTCTTCGGTGGTGCAAGCTATCGTATGGCTCACGGTGCTTCTGTTCGTCTTGGAATTTCGACGGACGGGGCTAGACATCTCTTCGGGGTCGAGTAATGATACCCGGGTTCAATCAGTTGAGCAAGGTGGGAAAGATTTAGAGGGCATGAAAGAGAGCACTCTGGCTAATTCACCCTCTTATTATTACTGGTCTTTGATGAAGGGTGTGTGGCTCAAACTTGGGATGAATCCCAACTCTTATGCAGTTTTCATTGGAATTGCTTGGGCTTTTATAGCAAACAGGTGGCATATTGAGTTGCCAAGCATTATGGAGGGATCTGTTTTAATCATGTCCAAGGCTGGTACCGGAACTGCCATGTTTAGCATGGGTGAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

260

Amino Acids

29.03

Weight (kDa)

6.29

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 258	3.7e-50	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	3 cut(s)	43, 119, 746
AccII	CGCG	2 cut(s)	218, 260
AciI	CCGC	4 cut(s)	117, 130, 208, 218
AclWI	GGATC	2 cut(s)	182, 727
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	170, 458
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	3 cut(s)	374, 748, 779
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	515
AjiI	CACGTC	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	5 cut(s)	238, 291, 312, 368, 422
AluI	AGCT	5 cut(s)	238, 291, 312, 368, 422
Alw21I	GWGCWC	2 cut(s)	258, 563
AlwI	GGATC	2 cut(s)	182, 727
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	219, 376
ApoI	RAATTY	2 cut(s)	170, 458
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	508, 509
AsuHPI	GGTGA	2 cut(s)	139, 567
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	507
BaeGI	GKGCMC	1 cut(s)	357
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	3 cut(s)	43, 119, 746
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	258, 563
BccI	CCATC	2 cut(s)	3, 376
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	2 cut(s)	508, 509
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	118, 219
BlsI	GCNGC	2 cut(s)	119, 220
BmcAI	AGTACT	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	508, 509
BmeT110I	CYCGRG	1 cut(s)	507
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	4 cut(s)	45, 79, 121, 748
BmrFI	CCNGG	2 cut(s)	508, 509
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	508, 509
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	39, 507, 738
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	39, 507, 738
BseGI	GGATG	2 cut(s)	14, 633
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	218, 260
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	221, 378
BshNI	GGYRCC	3 cut(s)	43, 119, 746
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	258, 563
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	508, 750
BslI	CCNNNNNNNGG	1 cut(s)	87
BsnI	GGCC	2 cut(s)	221, 378
BsoBI	CYCGRG	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	258, 357, 563
Bsp143I	GATC	3 cut(s)	187, 391, 719
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	4 cut(s)	117, 130, 208, 218
BspANI	GGCC	2 cut(s)	221, 378
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	218, 260
BspLI	GGNNCC	4 cut(s)	45, 79, 121, 748
BspPI	GGATC	2 cut(s)	182, 727
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	3 cut(s)	43, 119, 746
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	3 cut(s)	39, 507, 738
BssMI	GATC	3 cut(s)	187, 391, 719
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	39, 738
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	164, 490
BstACI	GRCGYC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	258, 420
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	14, 633
BstFNI	CGCG	2 cut(s)	218, 260
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	190, 394, 722
BstMBI	GATC	3 cut(s)	187, 391, 719
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 224, 266, 288, 439, 677
BstSCI	CCNGG	2 cut(s)	506, 507
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	2 cut(s)	218, 260
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 378
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	14, 633
BtsI	GCAGTG	2 cut(s)	119, 174
BtsIMutI	CAGTG	2 cut(s)	119, 174
Cac8I	GCNNGC	2 cut(s)	258, 420
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	377
Cfr9I	CCCGGG	1 cut(s)	507
Csp6I	GTAC	3 cut(s)	373, 747, 778
CviAII	CATG	5 cut(s)	40, 550, 733, 760, 769
CviQI	GTAC	3 cut(s)	373, 747, 778
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	3 cut(s)	189, 393, 721
DpnII	GATC	3 cut(s)	187, 391, 719
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	164, 490
EarI	CTCTTC	2 cut(s)	164, 490
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	39, 738
Eco52I	CGGCCG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	2 cut(s)	39, 738
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	2 cut(s)	39, 738
FaeI	CATG	5 cut(s)	43, 553, 736, 763, 772
FatI	CATG	5 cut(s)	39, 549, 732, 759, 768
Fnu4HI	GCNGC	2 cut(s)	118, 219
FokI	GGATG	2 cut(s)	21, 640
Fsp4HI	GCNGC	2 cut(s)	118, 219
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	118, 219
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	221, 378
HapII	CCGG	2 cut(s)	508, 750
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	43, 553, 736, 763, 772
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	2 cut(s)	508, 750
HphI	GGTGA	2 cut(s)	139, 567
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	188, 468
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	164, 183
HpyCH4V	TGCA	4 cut(s)	59, 324, 418, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 224, 266, 288, 439, 677
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	164, 183
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	5 cut(s)	43, 553, 736, 763, 772
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	750
Kzo9I	GATC	3 cut(s)	187, 391, 719
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	70, 120, 380, 521, 551, 577, 670, 729, 763
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	164, 183
MalI	GATC	3 cut(s)	189, 393, 721
MboI	GATC	3 cut(s)	187, 391, 719
MboII	GAAGA	6 cut(s)	26, 91, 136, 151, 399, 477
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	3 cut(s)	258, 357, 563
MluCI	AATT	5 cut(s)	170, 334, 458, 571, 660
Mly113I	GGCGCC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	4 cut(s)	161, 538, 589, 709
MseI	TTAA	2 cut(s)	329, 728
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	2 cut(s)	508, 750
MspR9I	CCNGG	2 cut(s)	508, 509
MvnI	CGCG	2 cut(s)	218, 260
MwoI	GCNNNNNNNGC	6 cut(s)	138, 224, 266, 288, 439, 677
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	508, 509
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	187, 391, 719
NlaIII	CATG	5 cut(s)	43, 553, 736, 763, 772
NlaIV	GGNNCC	4 cut(s)	45, 79, 121, 748
NspV	TTCGAA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	119, 220
PluTI	GGCGCC	1 cut(s)	123
PspN4I	GGNNCC	4 cut(s)	45, 79, 121, 748
PspPI	GGNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	3 cut(s)	374, 748, 779
RsaNI	GTAC	3 cut(s)	373, 747, 778
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	329, 728
SatI	GCNGC	2 cut(s)	118, 219
Sau3AI	GATC	3 cut(s)	187, 391, 719
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	779
ScrFI	CCNGG	2 cut(s)	508, 509
SduI	GDGCHC	3 cut(s)	258, 357, 563
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	292
SfoI	GGCGCC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	168
SmaI	CCCGGG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	5 cut(s)	170, 334, 458, 571, 660
SsiI	CCGC	4 cut(s)	117, 130, 208, 218
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	506, 507
StyI	CCWWGG	2 cut(s)	39, 738
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	2 cut(s)	167, 186
TaqI	TCGA	5 cut(s)	168, 186, 195, 463, 494
TasI	AATT	5 cut(s)	170, 334, 458, 571, 660
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	2 cut(s)	120, 221
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	2 cut(s)	329, 728
Tru9I	TTAA	2 cut(s)	329, 728
TscAI	CASTG	2 cut(s)	119, 181
TspDTI	ATGAA	6 cut(s)	202, 377, 566, 617, 643, 644
TspGWI	ACGGA	2 cut(s)	70, 481
TspMI	CCCGGG	1 cut(s)	507
TspRI	CASTG	2 cut(s)	119, 181
XapI	RAATTY	2 cut(s)	170, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmaI	CCCGGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.