Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Forward (+)

32595788 .. 32598440

Gene Structure 2653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1259500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATAGGGTGGGAAGATGTTTACAAGGTGGTGGCGGCTATGGTTCCACTCTACTTTGCCCTAATTTTAGGGTACGGCTCAGTGAGGTGGTGGGGCGTCTTCACTCCCGAGCAGTGTGGCGCGATCAACCGCTTCGTTTGTTTCTTTACTCTCCCACTCTTCACGTTTGAATTCACTGCACATGTTGATCCTTACAAATGGAACTACCGCTTCATTGGCGCCGACGCCATCTCTAAGGTCATAATCGTCGTGGTGCTAGTACTCTGGGGCAAGTGCAGCAGCAAAGGAAGTTATAGCTGGTCCATCACAAGCTTCTCGTTGTGCACGTTAACCAATTCCCTTGTGGTTGGTGTGCCCTTGATTAAAGCCATGTATGGTTCGTCAGCCGTTGATCTTGTTGTTCAATCATCGGTCGTGCAGGCCATCATATGGCTCACCATTCTTTTATTCGTCTTGGAATTTCGACGAACGGGGTCGATAGACATAGTTTCAAGTAGTACTACTGTCGACACTCGAGTTCAATCGGTTGATCCACAAGGGAAAGATGTAGAAGCCATGGAGGAGATAACAATAACTACTAGGCCTTCCTTTTGGTACTTGATGAAGGCTGTGTGGGTGAAACTTGGGATGAATCCCAACTCCTATGCAGTTTTTATTGGTATTGCTTGGGCTTTTATAGCAAACAGGTGGCATATTGAGTTGCCAAGCATCATGGAAGGATCTGTTTTAATCATGTCAAAAGCTGGTACAGGAACTGCTATGTTTAGCATGGGTATCTTCATGGCACTGCAGGAAAAATTTGTAGCCTGTGGGACGAGCCGAACAATAATTGGGATGGTTTTGAGGTTTATTGCTGGACCGGCAGCCATGGCGATTGGCTGTATTGCTGTGGGCTTGCATGGTGATGTTTTACGTGTTGCTATCATTCAGGCAGCATTACCACAATCCATTACCTCCTTCATATTTGCCAAAGAATATGGACTCCATGCAGAAGTGCTCAGTACAGCGGTAATATTTGGCATGTTGGTGTCCCTTCCGGTGTTGATCGCTTACTATGCAGTTCTAGAATTCGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

360

Amino Acids

39.48

Weight (kDa)

7.6

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 352	2.6e-78	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	35, 130, 208, 1007
AclWI	GGATC	3 cut(s)	182, 524, 727
AcsI	RAATTY	4 cut(s)	170, 458, 797, 1067
AcyI	GRCGYC	3 cut(s)	96, 219, 225
AfaI	GTAC	6 cut(s)	74, 261, 499, 596, 748, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	2 cut(s)	181, 913
AgsI	TTSAA	4 cut(s)	170, 404, 492, 521
AluBI	AGCT	3 cut(s)	297, 312, 743
AluI	AGCT	3 cut(s)	297, 312, 743
Alw21I	GWGCWC	2 cut(s)	326, 999
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	182, 524, 727
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	2 cut(s)	107, 513
AoxI	GGCC	2 cut(s)	420, 581
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	4 cut(s)	276, 279, 863, 932
ApoI	RAATTY	4 cut(s)	170, 458, 797, 1067
AspLEI	GCGC	2 cut(s)	122, 221
AspS9I	GGNCC	2 cut(s)	300, 857
AsuHPI	GGTGA	3 cut(s)	427, 628, 914
AvaI	CYCGRG	2 cut(s)	107, 513
AvaII	GGWCC	2 cut(s)	300, 857
BaeGI	GKGCMC	2 cut(s)	326, 357
BanI	GGYRCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	2 cut(s)	326, 999
BbvI	GCAGC	4 cut(s)	288, 291, 875, 944
BccI	CCATC	4 cut(s)	236, 311, 431, 829
BceAI	ACGGC	2 cut(s)	91, 371
BfaI	CTAG	3 cut(s)	257, 579, 1064
BfmI	CTRYAG	1 cut(s)	788
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	5 cut(s)	36, 277, 280, 864, 933
BlsI	GCNGC	5 cut(s)	37, 278, 281, 865, 934
BmcAI	AGTACT	2 cut(s)	261, 499
Bme18I	GGWCC	2 cut(s)	300, 857
BmeT110I	CYCGRG	2 cut(s)	107, 513
BmgT120I	GGNCC	2 cut(s)	300, 857
BmiI	GGNNCC	2 cut(s)	45, 220
BmsI	GCATC	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	914
BsaHI	GRCGYC	3 cut(s)	96, 219, 225
BsaJI	CCNNGG	2 cut(s)	555, 867
BsaWI	WCCGGW	1 cut(s)	1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse118I	RCCGGY	1 cut(s)	859
BseDI	CCNNGG	2 cut(s)	555, 867
BseGI	GGATG	2 cut(s)	633, 840
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	93, 1012
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	2 cut(s)	326, 357
BseXI	GCAGC	4 cut(s)	288, 291, 875, 944
BsgI	GTGCAG	3 cut(s)	162, 295, 437
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	422, 583
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	326, 999
BsiHKCI	CYCGRG	2 cut(s)	107, 513
BsiSI	CCGG	2 cut(s)	860, 1037
BslFI	GGGAC	2 cut(s)	826, 1015
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmFI	GGGAC	2 cut(s)	826, 1015
BsnI	GGCC	2 cut(s)	422, 583
BsoBI	CYCGRG	2 cut(s)	107, 513
Bsp1286I	GDGCHC	3 cut(s)	326, 357, 999
Bsp143I	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Bsp19I	CCATGG	2 cut(s)	555, 867
BspACI	CCGC	4 cut(s)	35, 130, 208, 1007
BspANI	GGCC	2 cut(s)	422, 583
BspCNI	CTCAG	2 cut(s)	92, 1011
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	45, 220
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	3 cut(s)	182, 524, 727
BspT107I	GGYRCC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	859
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	2 cut(s)	555, 867
BssMI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
BssNI	GRCGYC	3 cut(s)	96, 219, 225
BssT1I	CCWWGG	2 cut(s)	555, 867
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	3 cut(s)	96, 219, 225
BstBAI	YACGTR	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	420, 896
BstDEI	CTNAG	3 cut(s)	79, 234, 998
BstDSI	CCRYGG	2 cut(s)	555, 867
BstF5I	GGATG	2 cut(s)	633, 840
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	122, 221
BstKTI	GATC	6 cut(s)	126, 190, 394, 532, 722, 1047
BstMBI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	6 cut(s)	216, 276, 677, 860, 869, 1055
BstNSI	RCATGY	2 cut(s)	185, 1024
BstSFI	CTRYAG	1 cut(s)	788
BstSLI	GKGCMC	2 cut(s)	326, 357
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	288, 291, 875, 944
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	422, 583
BtgI	CCRYGG	2 cut(s)	555, 867
BtsCI	GGATG	2 cut(s)	633, 840
BtsI	GCAGTG	3 cut(s)	119, 174, 785
BtsIMutI	CAGTG	4 cut(s)	87, 119, 174, 785
Cac8I	GCNNGC	2 cut(s)	420, 896
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	2 cut(s)	122, 221
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	2 cut(s)	300, 857
CseI	GACGC	2 cut(s)	85, 233
Csp6I	GTAC	6 cut(s)	73, 260, 498, 595, 747, 1002
CviQI	GTAC	6 cut(s)	73, 260, 498, 595, 747, 1002
DdeI	CTNAG	3 cut(s)	79, 234, 998
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	6 cut(s)	125, 189, 393, 531, 721, 1046
DpnII	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	2 cut(s)	555, 867
Eco147I	AGGCCT	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	300, 857
Eco88I	CYCGRG	2 cut(s)	107, 513
EcoRI	GAATTC	2 cut(s)	170, 1067
EcoT14I	CCWWGG	2 cut(s)	555, 867
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	555, 867
FaqI	GGGAC	2 cut(s)	826, 1015
FauNDI	CATATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	5 cut(s)	36, 277, 280, 864, 933
FokI	GGATG	2 cut(s)	640, 847
Fsp4HI	GCNGC	5 cut(s)	36, 277, 280, 864, 933
FspBI	CTAG	3 cut(s)	257, 579, 1064
GlaI	GCGC	2 cut(s)	121, 220
GluI	GCNGC	5 cut(s)	36, 277, 280, 864, 933
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	422, 583
HapII	CCGG	2 cut(s)	860, 1037
HgaI	GACGC	2 cut(s)	85, 233
HhaI	GCGC	2 cut(s)	122, 221
Hin1I	GRCGYC	3 cut(s)	96, 219, 225
Hin6I	GCGC	2 cut(s)	120, 219
HinP1I	GCGC	2 cut(s)	120, 219
HincII	GTYRAC	2 cut(s)	330, 508
HindII	GTYRAC	2 cut(s)	330, 508
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	631, 981
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	2 cut(s)	860, 1037
HphI	GGTGA	3 cut(s)	427, 628, 914
Hpy166II	GTNNAC	4 cut(s)	22, 324, 330, 508
Hpy188III	TCNNGA	2 cut(s)	107, 1064
Hpy8I	GTNNAC	4 cut(s)	22, 324, 330, 508
Hpy99I	CGWCG	3 cut(s)	227, 251, 468
HpyAV	CCTTC	5 cut(s)	594, 598, 710, 967, 1043
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	3 cut(s)	164, 326, 913
HpyF10VI	GCNNNNNNNGC	6 cut(s)	216, 276, 677, 860, 869, 1055
HpyF3I	CTNAG	3 cut(s)	79, 234, 998
HpySE526I	ACGT	3 cut(s)	164, 326, 913
Hsp92I	GRCGYC	3 cut(s)	96, 219, 225
HspAI	GCGC	2 cut(s)	120, 219
KasI	GGCGCC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Lsp1109I	GCAGC	4 cut(s)	288, 291, 875, 944
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	3 cut(s)	257, 579, 1064
MaeII	ACGT	3 cut(s)	164, 326, 913
MalI	GATC	6 cut(s)	125, 189, 393, 531, 721, 1046
MboI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
MboII	GAAGA	4 cut(s)	26, 91, 151, 769
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	3 cut(s)	326, 357, 999
MluCI	AATT	7 cut(s)	63, 170, 334, 458, 797, 828, 1067
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	975
MnlI	CCTC	4 cut(s)	78, 553, 837, 964
MseI	TTAA	3 cut(s)	329, 363, 728
MslI	CAYNNNNRTG	2 cut(s)	903, 1025
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	2 cut(s)	860, 1037
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	6 cut(s)	216, 276, 677, 860, 869, 1055
NarI	GGCGCC	1 cut(s)	219
NcoI	CCATGG	2 cut(s)	555, 867
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
NlaIV	GGNNCC	2 cut(s)	45, 220
NspI	RCATGY	2 cut(s)	185, 1024
PaeR7I	CTCGAG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	583
PciI	ACATGT	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	631
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	37, 278, 281, 865, 934
PleI	GAGTC	1 cut(s)	975
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	975
Ppu21I	YACGTR	1 cut(s)	914
PscI	ACATGT	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	45, 220
PspPI	GGNCC	2 cut(s)	300, 857
PspXI	VCTCGAGB	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	6 cut(s)	74, 261, 499, 596, 748, 1003
RsaNI	GTAC	6 cut(s)	73, 260, 498, 595, 747, 1002
RseI	CAYNNNNRTG	2 cut(s)	903, 1025
SalI	GTCGAC	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	329, 363, 728
SatI	GCNGC	5 cut(s)	36, 277, 280, 864, 933
Sau3AI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Sau96I	GGNCC	2 cut(s)	300, 857
ScaI	AGTACT	2 cut(s)	261, 499
SchI	GAGTC	1 cut(s)	975
SduI	GDGCHC	3 cut(s)	326, 357, 999
SfaNI	GCATC	1 cut(s)	717
SfcI	CTRYAG	1 cut(s)	788
SfoI	GGCGCC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	300, 857
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	2 cut(s)	903, 1025
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	7 cut(s)	63, 170, 334, 458, 797, 828, 1067
SseBI	AGGCCT	1 cut(s)	583
SsiI	CCGC	4 cut(s)	35, 130, 208, 1007
SspDI	GGCGCC	1 cut(s)	218
SspI	AATATT	1 cut(s)	1014
SspMI	CTAG	3 cut(s)	257, 579, 1064
StuI	AGGCCT	1 cut(s)	583
StyI	CCWWGG	2 cut(s)	555, 867
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	3 cut(s)	167, 329, 916
TaqI	TCGA	4 cut(s)	463, 476, 507, 514
TaqII	GACCGA	1 cut(s)	400
TasI	AATT	7 cut(s)	63, 170, 334, 458, 797, 828, 1067
TatI	WGTACW	3 cut(s)	259, 497, 1001
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	3 cut(s)	329, 363, 728
Tru9I	TTAA	3 cut(s)	329, 363, 728
TscAI	CASTG	4 cut(s)	87, 119, 181, 792
TseI	GCWGC	4 cut(s)	276, 279, 863, 932
TspDTI	ATGAA	5 cut(s)	202, 617, 644, 769, 949
TspRI	CASTG	4 cut(s)	87, 119, 181, 792
Van91I	CCANNNNNTGG	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	300, 857
XapI	RAATTY	4 cut(s)	170, 458, 797, 1067
XbaI	TCTAGA	1 cut(s)	1063
XceI	RCATGY	2 cut(s)	185, 1024
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	3 cut(s)	257, 579, 1064
ZrmI	AGTACT	2 cut(s)	261, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.