Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Reverse (-)

29117091 .. 29119535

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1205100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATTGGGTGGGAAGATGTTTACAAGGTGGTGGTAGCCATGGTTCCACTCTATGTTGCCCTAATTTTAGGGTACGGCTCAGTAAGGTGGTGGCACATATTCACTCCCGAGCAGTGTGGCGCGATCAACCGCTTCGTTTGTTTCTTTACTCTCCCACTCTTCACGTTCGAATTCACTGCACATGTGGATCCTTACAAATGGAACTACCGCTTCATCGGCGCCGACTTCATCTCTAAGCTCATAATCGTGGTGGTGCTAGCACTTTGGGCCAAGTGCAGCAGCAAAGGAAGCTACAGTTGGTCCATTACAAGCTTCTCTTTGTGCACGTTAACTAATTCCCTAGTGGTTGGTGTGCCCTTGATTAGAGCCATGTATGGTTCGTCATCCGTTGATCTTGTTGTTCAATCATCGGTCGTGCAGGCCATCGTATGGCTCACCATTCTTTTGTTTGTCTTGGAATTTCGACGTACGGGGTCGATAGGCATAGTTTCAAGTCGTACTAATGTCGACACTCGAGTTCACTCGGTTGATCCACAAGGGGAGGACATAGAAGCCATGGAGGAGATAACAATAAGTACTAGGCCTTCCTTTTGGTATTTGATGAAGGCTGTGTGGGTGAAACTTGGAATGAATCCCAACTCCTATGCAGTTTTTATTGGTATTGCTTGGGCTTTTATAGCAAAAAGGTGGCATATTGAGTTGCCAAGCATCATGGAAGGATCTGTTTTAATCATGTCAAAAGCTGGTACAGGCACTGCTATGTTTAGCATGGGTATCTTCATGGCACTGCAGGAAAAATTTGTAGCCTGTGGGACGAGCTTAACAATAATTGGGATGGTTCTGAGGTTTATTGCAGGACCGGCAGCCATGGCGATTGGCTCTATTGCTGTGGGTCTGCATGGTGATGTTTTACGTGTTGCTATCATTCAGGCAGCAGTGCCACAGTCCATTACGTCCTTCATATTTGCCGAACAGTATGGACTCCATGCAGAAGTGCTCAGTACAGCGGTAATATTTGGCATGTTGGTCTCCCTTCCAGTGTTGATCGCTTACTATGCAGTTCTAGGATTTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

360

Amino Acids

39.56

Weight (kDa)

7.67

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 352	3.8e-77	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	507
AccII	CGCG	1 cut(s)	122
AciI	CCGC	3 cut(s)	130, 208, 1007
AclWI	GGATC	4 cut(s)	182, 195, 524, 727
AcsI	RAATTY	3 cut(s)	170, 458, 797
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	6 cut(s)	74, 469, 499, 577, 748, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	2 cut(s)	181, 913
AgsI	TTSAA	2 cut(s)	404, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	5 cut(s)	238, 291, 312, 743, 819
AluI	AGCT	5 cut(s)	238, 291, 312, 743, 819
Alw21I	GWGCWC	2 cut(s)	326, 999
Alw26I	GTCTC	1 cut(s)	1033
Alw44I	GTGCAC	1 cut(s)	322
AlwI	GGATC	4 cut(s)	182, 195, 524, 727
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	2 cut(s)	107, 513
AoxI	GGCC	3 cut(s)	267, 420, 581
ApaLI	GTGCAC	1 cut(s)	322
ApeKI	GCWGC	4 cut(s)	276, 279, 863, 932
ApoI	RAATTY	3 cut(s)	170, 458, 797
AspLEI	GCGC	2 cut(s)	122, 221
AspS9I	GGNCC	3 cut(s)	267, 300, 857
AsuHPI	GGTGA	3 cut(s)	427, 628, 914
AsuII	TTCGAA	1 cut(s)	168
AsuNHI	GCTAGC	1 cut(s)	256
AvaI	CYCGRG	2 cut(s)	107, 513
AvaII	GGWCC	2 cut(s)	300, 857
BaeGI	GKGCMC	2 cut(s)	326, 357
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	568, 600
Bbv12I	GWGCWC	2 cut(s)	326, 999
BbvI	GCAGC	4 cut(s)	288, 291, 875, 944
BccI	CCATC	2 cut(s)	431, 829
BceAI	ACGGC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcoDI	GTCTC	1 cut(s)	1033
BfaI	CTAG	4 cut(s)	257, 341, 579, 1064
BfmI	CTRYAG	2 cut(s)	292, 788
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	4 cut(s)	277, 280, 864, 933
BlsI	GCNGC	4 cut(s)	278, 281, 865, 934
BmcAI	AGTACT	1 cut(s)	577
Bme18I	GGWCC	2 cut(s)	300, 857
BmeT110I	CYCGRG	2 cut(s)	107, 513
BmgT120I	GGNCC	3 cut(s)	267, 300, 857
BmiI	GGNNCC	3 cut(s)	45, 189, 220
BmsI	GCATC	1 cut(s)	717
BmtI	GCTAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	914
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	1033
BsaJI	CCNNGG	3 cut(s)	39, 555, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	1 cut(s)	1037
BseDI	CCNNGG	3 cut(s)	39, 555, 867
BseGI	GGATG	2 cut(s)	383, 840
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	93, 833, 1012
BseNI	ACTGG	1 cut(s)	1037
BseRI	GAGGAG	1 cut(s)	575
BseSI	GKGCMC	2 cut(s)	326, 357
BseXI	GCAGC	4 cut(s)	288, 291, 875, 944
BsgI	GTGCAG	3 cut(s)	162, 295, 437
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	269, 422, 583
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	326, 999
BsiHKCI	CYCGRG	2 cut(s)	107, 513
BsiSI	CCGG	1 cut(s)	860
BsiWI	CGTACG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	1 cut(s)	1033
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	3 cut(s)	269, 422, 583
Bso31I	GGTCTC	1 cut(s)	1033
BsoBI	CYCGRG	2 cut(s)	107, 513
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	326, 357, 999
Bsp143I	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Bsp19I	CCATGG	3 cut(s)	39, 555, 867
BspACI	CCGC	3 cut(s)	130, 208, 1007
BspANI	GGCC	3 cut(s)	269, 422, 583
BspCNI	CTCAG	3 cut(s)	92, 834, 1011
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	3 cut(s)	45, 189, 220
BspMAI	CTGCAG	1 cut(s)	792
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	4 cut(s)	182, 195, 524, 727
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	1037
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	3 cut(s)	39, 555, 867
BssMI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	3 cut(s)	39, 555, 867
Bst4CI	ACNGT	3 cut(s)	296, 945, 975
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	258, 420
BstDEI	CTNAG	4 cut(s)	79, 234, 842, 998
BstDSI	CCRYGG	3 cut(s)	39, 555, 867
BstF5I	GGATG	2 cut(s)	383, 840
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	122, 221
BstKTI	GATC	6 cut(s)	126, 190, 394, 532, 722, 1047
BstMAI	GTCTC	1 cut(s)	1033
BstMBI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 266, 288, 677, 860, 869, 1055
BstNSI	RCATGY	2 cut(s)	185, 1024
BstSFI	CTRYAG	2 cut(s)	292, 788
BstSLI	GKGCMC	2 cut(s)	326, 357
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	288, 291, 875, 944
BstX2I	RGATCY	2 cut(s)	187, 719
BstYI	RGATCY	2 cut(s)	187, 719
BsuRI	GGCC	3 cut(s)	269, 422, 583
BtgI	CCRYGG	3 cut(s)	39, 555, 867
BtsCI	GGATG	2 cut(s)	383, 840
BtsI	GCAGTG	5 cut(s)	119, 174, 753, 785, 942
BtsIMutI	CAGTG	6 cut(s)	119, 174, 753, 785, 942, 1044
Cac8I	GCNNGC	2 cut(s)	258, 420
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	2 cut(s)	122, 221
Cfr10I	RCCGGY	1 cut(s)	859
Cfr13I	GGNCC	3 cut(s)	267, 300, 857
Csp6I	GTAC	6 cut(s)	73, 468, 498, 576, 747, 1002
CviQI	GTAC	6 cut(s)	73, 468, 498, 576, 747, 1002
DdeI	CTNAG	4 cut(s)	79, 234, 842, 998
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	6 cut(s)	125, 189, 393, 531, 721, 1046
DpnII	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	39, 555, 867
Eco147I	AGGCCT	1 cut(s)	583
Eco31I	GGTCTC	1 cut(s)	1033
Eco47I	GGWCC	2 cut(s)	300, 857
Eco88I	CYCGRG	2 cut(s)	107, 513
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	3 cut(s)	39, 555, 867
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	3 cut(s)	39, 555, 867
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FaqI	GGGAC	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	4 cut(s)	277, 280, 864, 933
FokI	GGATG	2 cut(s)	370, 847
Fsp4HI	GCNGC	4 cut(s)	277, 280, 864, 933
FspBI	CTAG	4 cut(s)	257, 341, 579, 1064
GlaI	GCGC	2 cut(s)	121, 220
GluI	GCNGC	4 cut(s)	277, 280, 864, 933
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	269, 422, 583
HapII	CCGG	1 cut(s)	860
HhaI	GCGC	2 cut(s)	122, 221
Hin1I	GRCGYC	1 cut(s)	219
Hin6I	GCGC	2 cut(s)	120, 219
HinP1I	GCGC	2 cut(s)	120, 219
HincII	GTYRAC	2 cut(s)	330, 508
HindII	GTYRAC	2 cut(s)	330, 508
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	2 cut(s)	631, 981
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	860
HphI	GGTGA	3 cut(s)	427, 628, 914
Hpy166II	GTNNAC	5 cut(s)	22, 324, 330, 508, 520
Hpy188I	TCNGA	1 cut(s)	843
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	5 cut(s)	22, 324, 330, 508, 520
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	5 cut(s)	594, 598, 710, 967, 1043
HpyCH4III	ACNGT	3 cut(s)	296, 945, 975
HpyCH4IV	ACGT	5 cut(s)	164, 326, 466, 913, 953
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 266, 288, 677, 860, 869, 1055
HpyF3I	CTNAG	4 cut(s)	79, 234, 842, 998
HpySE526I	ACGT	5 cut(s)	164, 326, 466, 913, 953
Hsp92I	GRCGYC	1 cut(s)	219
HspAI	GCGC	2 cut(s)	120, 219
KasI	GGCGCC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
LpnPI	CCDG	9 cut(s)	404, 729, 735, 776, 820, 840, 873, 914, 1050
Lsp1109I	GCAGC	4 cut(s)	288, 291, 875, 944
LweI	GCATC	1 cut(s)	717
MaeI	CTAG	4 cut(s)	257, 341, 579, 1064
MaeII	ACGT	5 cut(s)	164, 326, 466, 913, 953
MalI	GATC	6 cut(s)	125, 189, 393, 531, 721, 1046
MboI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
MboII	GAAGA	3 cut(s)	26, 151, 769
MflI	RGATCY	2 cut(s)	187, 719
MhlI	GDGCHC	3 cut(s)	326, 357, 999
MluCI	AATT	6 cut(s)	63, 170, 334, 458, 797, 828
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	975
MnlI	CCTC	3 cut(s)	535, 553, 837
MseI	TTAA	3 cut(s)	329, 728, 821
MslI	CAYNNNNRTG	3 cut(s)	245, 758, 903
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	1 cut(s)	860
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	216, 266, 288, 677, 860, 869, 1055
NarI	GGCGCC	1 cut(s)	219
NcoI	CCATGG	3 cut(s)	39, 555, 867
NdeII	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
NheI	GCTAGC	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	45, 189, 220
NspI	RCATGY	2 cut(s)	185, 1024
NspV	TTCGAA	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	513
PceI	AGGCCT	1 cut(s)	583
PciI	ACATGT	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	631
Pfl23II	CGTACG	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	278, 281, 865, 934
PleI	GAGTC	1 cut(s)	975
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	975
Ppu21I	YACGTR	1 cut(s)	914
PscI	ACATGT	1 cut(s)	181
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	45, 189, 220
PspPI	GGNCC	3 cut(s)	267, 300, 857
PspXI	VCTCGAGB	1 cut(s)	513
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	187, 719
RsaI	GTAC	6 cut(s)	74, 469, 499, 577, 748, 1003
RsaNI	GTAC	6 cut(s)	73, 468, 498, 576, 747, 1002
RseI	CAYNNNNRTG	3 cut(s)	245, 758, 903
SalI	GTCGAC	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	329, 728, 821
SatI	GCNGC	4 cut(s)	277, 280, 864, 933
Sau3AI	GATC	6 cut(s)	123, 187, 391, 529, 719, 1044
Sau96I	GGNCC	3 cut(s)	267, 300, 857
ScaI	AGTACT	1 cut(s)	577
SchI	GAGTC	1 cut(s)	975
SduI	GDGCHC	3 cut(s)	326, 357, 999
SfaNI	GCATC	1 cut(s)	717
SfcI	CTRYAG	2 cut(s)	292, 788
SfoI	GGCGCC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	2 cut(s)	300, 857
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	3 cut(s)	245, 758, 903
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	6 cut(s)	63, 170, 334, 458, 797, 828
SseBI	AGGCCT	1 cut(s)	583
SsiI	CCGC	3 cut(s)	130, 208, 1007
SspDI	GGCGCC	1 cut(s)	218
SspI	AATATT	1 cut(s)	1014
SspMI	CTAG	4 cut(s)	257, 341, 579, 1064
StuI	AGGCCT	1 cut(s)	583
StyI	CCWWGG	3 cut(s)	39, 555, 867
TaaI	ACNGT	3 cut(s)	296, 945, 975
TaiI	ACGT	5 cut(s)	167, 329, 469, 916, 956
TaqI	TCGA	5 cut(s)	168, 463, 476, 507, 514
TaqII	GACCGA	1 cut(s)	400
TasI	AATT	6 cut(s)	63, 170, 334, 458, 797, 828
TatI	WGTACW	2 cut(s)	575, 1001
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	3 cut(s)	329, 728, 821
Tru9I	TTAA	3 cut(s)	329, 728, 821
TscAI	CASTG	6 cut(s)	119, 181, 760, 792, 942, 1044
TseI	GCWGC	4 cut(s)	276, 279, 863, 932
TspDTI	ATGAA	6 cut(s)	202, 217, 617, 644, 769, 949
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	6 cut(s)	119, 181, 760, 792, 942, 1044
Van91I	CCANNNNNTGG	1 cut(s)	429
VneI	GTGCAC	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	300, 857
XapI	RAATTY	3 cut(s)	170, 458, 797
XceI	RCATGY	2 cut(s)	185, 1024
XhoI	CTCGAG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	507
XspI	CTAG	4 cut(s)	257, 341, 579, 1064
ZrmI	AGTACT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.