Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Reverse (-)

72504356 .. 72505974

Gene Structure 1619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0608100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGTTTCAGCTGGTAGAGAATAGCAAGGGCAAAACCCCACCATTAATAATCATCACTGGACAATCTGTGGGAGGTAGTATAGCTACACTCTTCACCTTATGGTTGCTAGAAGGCCTCAACTTGTCGAAAGCCAAACGCCCCTTTTGCATTACTTTCGGTTCTCCCCTTGTTGGCGATGAACACCTTCAAAAATGTGTGTTAGAATTCTCAACTTGGAAATATTGCTTCTTGCATATAGTCTCCAACCAAGATCATACTCCTAAAATCTTTATGTCCCAAAATACAACTGGTGCTTATAAGCCATTTGGGACATTCTTATTATGCTCGGCTTCGGGTTGTGCTTGTTCTGAGGACCCGGATTTTGTTTTGGAACAATTTGTGACAACCAATTCTCACAGTGCTCAAACTCAAGATCCTAATTTGGGGTTCCCCTATGGACAAATTTTGGAGGATCTCAAGCGCAAGGCATTATGTAATGTTTTCAAGTCCATTGGAGGGGAAAGAGATCCACTTGAAGCTAGCATAATCACACAACTCCTAGCAATTGGAGCAGTCTCACCGCAGTCCTGTATGGATATCGACAATCTGGTTGGGAAGATGAAAAGACATGAAACAAAGTTACTAATTCAGAAGATGAAGAATTCGGATTCTGACAACAAGTTTAATGATGTTAAAATTCACATGGCCTACTTGGAGTGGTACAAGAAGGAGTCCAAAGATAAAGGTTATGGATACTATGACATGTACAGAAAGAAGGAGAAGCCAGCTGACGTTAAGGTTAACGAGTATAAGAAGAAACTCATGAATTACTGGGAGGACTCTGTCACAGAAATAGAGGACAGGCCAAAGTTAGAAGAAGGAGCTTACTTGCGGCTTCGTTGGCTTTATGGAGGCACAACCTACAGGCGGATGGTTGAACCACTTCACATTGCAGACTACTATAAGGATGGTGGGGAAAATTACCAAACCGAGGATGGGAAAAGGCCTAAACATTTTACTCTGTTGGAGAAATTGCATCAGGAGAAGCAGGAGCAAGAAGAGAAGAAGAAGGAGCAAGAAAAGAAGAAGCAGGAAACACAGAAACAAGAAGAAAAACCAGAATCTGGCCCAAGCAAATCCAAAAGAAAGAACGTGGGTTCTATTTTGAATGATGATTCTTGTTTTTGGGCACGTGTTGAGGAAGCTCTCATCTTGTTGAAGAATGGAGGACTAACTACTGATGACAAAGGGAAGTTGAAAGAGTTTGAGGACTATGTGTGGATTGCTCTCAAGAATTATGCAGTGTCACCTGAGATTTTCTTGAAGAACAGCAGTTTTATGAAATGGTGGAATGAGTATAAAGGAATTGTTGACAGCTCTTCATCGCTCTCGCACTTTATGAAAAATGGCGGTCCCAAAGAGTACGAGGAAGGGAAGTTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

474

Amino Acids

54.51

Weight (kDa)

7.89

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	14 - 91	1.8e-13	Lipase (class 3)
EDS1_EP	PF18117	230 - 455	3.7e-57	Enhanced disease susceptibility 1 protein EP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AciI	CCGC	4 cut(s)	560, 871, 907, 1389
AclWI	GGATC	3 cut(s)	407, 459, 500
AcsI	RAATTY	4 cut(s)	203, 441, 640, 675
AcvI	CACGTG	1 cut(s)	1172
AfaI	GTAC	3 cut(s)	701, 746, 1403
AfiI	CCNNNNNNNGG	7 cut(s)	170, 422, 495, 906, 970, 975, 1103
AflIII	ACRYGT	2 cut(s)	741, 1171
AgsI	TTSAA	8 cut(s)	188, 484, 515, 917, 1147, 1198, 1237, 1303
AluBI	AGCT	7 cut(s)	10, 83, 518, 767, 863, 1184, 1356
AluI	AGCT	7 cut(s)	10, 83, 518, 767, 863, 1184, 1356
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	244, 559
AlwI	GGATC	3 cut(s)	407, 459, 500
AlwNI	CAGNNNCTG	1 cut(s)	1103
AoxI	GGCC	5 cut(s)	112, 684, 842, 983, 1105
ApoI	RAATTY	4 cut(s)	203, 441, 640, 675
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AseI	ATTAAT	1 cut(s)	44
Asp700I	GAANNNNTTC	2 cut(s)	183, 921
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	352, 1106, 1391
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	85, 549, 1278
AsuNHI	GCTAGC	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	352, 1391
BaeGI	GKGCMC	1 cut(s)	1171
BbrPI	CACGTG	1 cut(s)	1172
Bbv12I	GWGCWC	1 cut(s)	403
BccI	CCATC	3 cut(s)	904, 941, 968
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciVI	GTATCC	1 cut(s)	725
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	244, 559
BfaI	CTAG	4 cut(s)	107, 519, 539, 1423
BfmI	CTRYAG	1 cut(s)	901
BfuI	GTATCC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	872
BlsI	GCNGC	1 cut(s)	873
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	2 cut(s)	352, 1391
BmgT120I	GGNCC	3 cut(s)	352, 1106, 1391
BmiI	GGNNCC	3 cut(s)	354, 428, 1393
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	1 cut(s)	1024
BmtI	GCTAGC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	820
BpuEI	CTTGAG	3 cut(s)	393, 440, 1253
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	1172
BsaJI	CCNNGG	1 cut(s)	969
Bsc4I	CCNNNNNNNGG	7 cut(s)	170, 422, 495, 906, 970, 975, 1103
Bse1I	ACTGG	3 cut(s)	61, 292, 815
Bse3DI	GCAATG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	3 cut(s)	915, 952, 979
BseLI	CCNNNNNNNGG	7 cut(s)	170, 422, 495, 906, 970, 975, 1103
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	2 cut(s)	339, 1281
BseNI	ACTGG	3 cut(s)	61, 292, 815
BseSI	GKGCMC	1 cut(s)	1171
BshFI	GGCC	5 cut(s)	114, 686, 844, 985, 1107
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	3 cut(s)	259, 322, 1377
BslI	CCNNNNNNNGG	7 cut(s)	170, 422, 495, 906, 970, 975, 1103
BsmAI	GTCTC	2 cut(s)	244, 559
BsmFI	GGGAC	3 cut(s)	259, 322, 1377
BsnI	GGCC	5 cut(s)	114, 686, 844, 985, 1107
Bsp1286I	GDGCHC	2 cut(s)	403, 1171
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	4 cut(s)	250, 412, 451, 505
BspACI	CCGC	4 cut(s)	560, 871, 907, 1389
BspANI	GGCC	5 cut(s)	114, 686, 844, 985, 1107
BspCNI	CTCAG	2 cut(s)	340, 1282
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	354, 428, 1393
BspOI	GCTAGC	1 cut(s)	522
BspPI	GGATC	3 cut(s)	407, 459, 500
BspQI	GCTCTTC	1 cut(s)	1363
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	3 cut(s)	61, 292, 815
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	4 cut(s)	250, 412, 451, 505
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	3 cut(s)	95, 1032, 1363
BstAUI	TGTACA	1 cut(s)	744
BstBAI	YACGTR	1 cut(s)	1172
BstC8I	GCNNGC	2 cut(s)	520, 765
BstDEI	CTNAG	2 cut(s)	348, 1290
BstF5I	GGATG	3 cut(s)	915, 952, 979
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	253, 415, 454, 508
BstMAI	GTCTC	2 cut(s)	244, 559
BstMBI	GATC	4 cut(s)	250, 412, 451, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 548, 880
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	901
BstSLI	GKGCMC	1 cut(s)	1171
BstX2I	RGATCY	3 cut(s)	412, 451, 505
BstYI	RGATCY	3 cut(s)	412, 451, 505
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	5 cut(s)	114, 686, 844, 985, 1107
BtgZI	GCGATG	2 cut(s)	189, 1347
BtsCI	GGATG	3 cut(s)	915, 952, 979
BtsI	GCAGTG	1 cut(s)	1287
BtsIMutI	CAGTG	3 cut(s)	54, 403, 1287
Cac8I	GCNNGC	2 cut(s)	520, 765
CaiI	CAGNNNCTG	1 cut(s)	1103
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	352, 1106, 1391
Csp6I	GTAC	3 cut(s)	700, 745, 1402
CviAII	CATG	4 cut(s)	608, 682, 742, 802
CviQI	GTAC	3 cut(s)	700, 745, 1402
DdeI	CTNAG	2 cut(s)	348, 1290
DpnI	GATC	4 cut(s)	252, 414, 453, 507
DpnII	GATC	4 cut(s)	250, 412, 451, 505
Eam1104I	CTCTTC	3 cut(s)	95, 1032, 1363
EarI	CTCTTC	3 cut(s)	95, 1032, 1363
EciI	GGCGGA	1 cut(s)	922
Eco147I	AGGCCT	2 cut(s)	114, 985
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	352, 1391
Eco72I	CACGTG	1 cut(s)	1172
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRI	GAATTC	2 cut(s)	203, 640
EcoRV	GATATC	1 cut(s)	577
FaeI	CATG	4 cut(s)	611, 685, 745, 805
FaqI	GGGAC	3 cut(s)	259, 322, 1377
FatI	CATG	4 cut(s)	607, 681, 741, 801
Fnu4HI	GCNGC	1 cut(s)	872
FokI	GGATG	3 cut(s)	922, 959, 986
Fsp4HI	GCNGC	1 cut(s)	872
FspBI	CTAG	4 cut(s)	107, 519, 539, 1423
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	1 cut(s)	872
HaeIII	GGCC	5 cut(s)	114, 686, 844, 985, 1107
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	4 cut(s)	611, 685, 745, 805
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	781, 1351
HindII	GTYRAC	2 cut(s)	781, 1351
HinfI	GANTC	5 cut(s)	647, 710, 818, 1100, 1154
HpaI	GTTAAC	1 cut(s)	781
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	3 cut(s)	85, 549, 1278
Hpy166II	GTNNAC	3 cut(s)	781, 1351, 1419
Hpy188I	TCNGA	4 cut(s)	349, 630, 646, 652
Hpy188III	TCNNGA	5 cut(s)	410, 802, 1019, 1270, 1300
Hpy8I	GTNNAC	3 cut(s)	781, 1351, 1419
HpyAV	CCTTC	7 cut(s)	104, 194, 700, 748, 851, 1042, 1403
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	3 cut(s)	771, 1131, 1171
HpyCH4V	TGCA	5 cut(s)	147, 232, 932, 1015, 1280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 548, 880
HpyF3I	CTNAG	2 cut(s)	348, 1290
HpySE526I	ACGT	3 cut(s)	771, 1131, 1171
Hsp92II	CATG	4 cut(s)	611, 685, 745, 805
HspAI	GCGC	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	250, 412, 451, 505
LguI	GCTCTTC	1 cut(s)	1363
LmnI	GCTCC	4 cut(s)	548, 860, 1030, 1051
LweI	GCATC	1 cut(s)	1024
MaeI	CTAG	4 cut(s)	107, 519, 539, 1423
MaeII	ACGT	3 cut(s)	771, 1131, 1171
MaeIII	GTNAC	4 cut(s)	379, 618, 823, 1284
MalI	GATC	4 cut(s)	252, 414, 453, 507
MboI	GATC	4 cut(s)	250, 412, 451, 505
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	3 cut(s)	412, 451, 505
MhlI	GDGCHC	2 cut(s)	403, 1171
MlyI	GAGTC	2 cut(s)	719, 812
MmeI	TCCRAC	2 cut(s)	267, 984
MroXI	GAANNNNTTC	2 cut(s)	183, 921
MseI	TTAA	5 cut(s)	44, 663, 672, 774, 780
MspA1I	CMGCKG	2 cut(s)	10, 767
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	356
MunI	CAATTG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	144, 548, 880
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	4 cut(s)	250, 412, 451, 505
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	4 cut(s)	611, 685, 745, 805
NlaIV	GGNNCC	3 cut(s)	354, 428, 1393
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	379, 823, 1284
NspI	RCATGY	1 cut(s)	745
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	2 cut(s)	114, 985
PciI	ACATGT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	1363
PdmI	GAANNNNTTC	2 cut(s)	183, 921
PfeI	GAWTC	3 cut(s)	647, 1100, 1154
PflFI	GACNNNGTC	1 cut(s)	821
PflMI	CCANNNNNTGG	1 cut(s)	1103
PkrI	GCNGC	1 cut(s)	873
PleI	GAGTC	2 cut(s)	718, 812
PmaCI	CACGTG	1 cut(s)	1172
PmlI	CACGTG	1 cut(s)	1172
PpsI	GAGTC	2 cut(s)	718, 812
Ppu21I	YACGTR	1 cut(s)	1172
PpuMI	RGGWCCY	1 cut(s)	352
PscI	ACATGT	1 cut(s)	741
PshBI	ATTAAT	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	352
PspCI	CACGTG	1 cut(s)	1172
PspN4I	GGNNCC	3 cut(s)	354, 428, 1393
PspPI	GGNCC	3 cut(s)	352, 1106, 1391
PspPPI	RGGWCCY	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	1103
PsuI	RGATCY	3 cut(s)	412, 451, 505
PsyI	GACNNNGTC	1 cut(s)	821
PvuII	CAGCTG	2 cut(s)	10, 767
RsaI	GTAC	3 cut(s)	701, 746, 1403
RsaNI	GTAC	3 cut(s)	700, 745, 1402
SapI	GCTCTTC	1 cut(s)	1363
SaqAI	TTAA	5 cut(s)	44, 663, 672, 774, 780
SatI	GCNGC	1 cut(s)	872
Sau3AI	GATC	4 cut(s)	250, 412, 451, 505
Sau96I	GGNCC	3 cut(s)	352, 1106, 1391
SchI	GAGTC	2 cut(s)	719, 812
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	403, 1171
SfaNI	GCATC	1 cut(s)	1024
SfcI	CTRYAG	1 cut(s)	901
SinI	GGWCC	2 cut(s)	352, 1391
SmlI	CTYRAG	3 cut(s)	408, 455, 1268
SmoI	CTYRAG	3 cut(s)	408, 455, 1268
SseBI	AGGCCT	2 cut(s)	114, 985
SsiI	CCGC	4 cut(s)	560, 871, 907, 1389
SspI	AATATT	1 cut(s)	221
SspMI	CTAG	4 cut(s)	107, 519, 539, 1423
StuI	AGGCCT	2 cut(s)	114, 985
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	3 cut(s)	774, 1134, 1174
TaqI	TCGA	2 cut(s)	125, 579
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	874
TfiI	GAWTC	3 cut(s)	647, 1100, 1154
Tru1I	TTAA	5 cut(s)	44, 663, 672, 774, 780
Tru9I	TTAA	5 cut(s)	44, 663, 672, 774, 780
TscAI	CASTG	3 cut(s)	61, 403, 1287
TseFI	GTSAC	3 cut(s)	379, 823, 1284
Tsp45I	GTSAC	3 cut(s)	379, 823, 1284
TspDTI	ATGAA	8 cut(s)	192, 614, 624, 650, 818, 1334, 1350, 1394
TspRI	CASTG	3 cut(s)	61, 403, 1287
Tth111I	GACNNNGTC	1 cut(s)	821
Van91I	CCANNNNNTGG	1 cut(s)	1103
VpaK11BI	GGWCC	2 cut(s)	352, 1391
VspI	ATTAAT	1 cut(s)	44
XapI	RAATTY	4 cut(s)	203, 441, 640, 675
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	2 cut(s)	284, 971
XmnI	GAANNNNTTC	2 cut(s)	183, 921
XspI	CTAG	4 cut(s)	107, 519, 539, 1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.