Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013198

Physical Location & Seq

Genomic Coordinates Reverse (-)

507752 .. 510742

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGATAGGATGGGAAGATGTTTACAAAGTGGTGGTAGCCATGGCACCACTCTACTTTGCACTCATTTTAGGGTTTGGCTCCGTCAGGTGGTGGCACATCTTCACTCCTGAGCAGTGCGGCGCCATAAACCGCTTTGTTTGCTTCTTCACCCTCCCACTCTTCACGTTCGAATTCACTGCTCACGTCGATCCTTTCGAGTGGAACTACCGCTTCATCGCGGCCGATGCCATTTCCAAGCTCATAATCGTGGTTGTGCTCGCGTGTTGGGCAAAGTGTAGTAGCAAGGGAAGCTATAGTTGGTCAATAACAAGCTTCTCTCTCTGCACTTTAACTAATTCACTTGTCGTTGGAGTGCCCCTAATGAAAGCTATGTACGGCCCGATGGCTGTTGATCTGGTAGTTCAGTCTTCGGTGGTGCAAGCTATCGTATGGCTCACGGTGCTTCTGTTCGTCTTGGAATTTCGACGGACGGGGCTAGACATCTCTTCGGGGTCGAGTAATGATACCCGGGTTCAATCAGTTGAGCAAGGTGGGAAAGATTTAGAGGGCATGAAAGAGAGCACTCTGGCTAATTCACCCTCTTATTATTACTGGTCTTTGATGAAGGGTGTGTGGCTCAAACTTGGGATGAATCCCAACTCTTATGCAGTTTTCATTGGAATTGCTTGGGCTTTTATAGCAAACAGGTGGCATATTGAGTTGCCAAGCATTATGGAGGGATCTGTTTTAATCATGTCCAAGGCTGGTACCGGAACTGCCATGTTTAGCATGGGTATCTTCATGGCACTGCAAGAGAAATTCGTAGCTTGTGGGACGAGCCTAACGATAATAGGGATGATTTTGAGGTTCATTGCCGGACCAGCAGCCATGGCTATCGGCTCTATCGCTGTTGGCTTGCATGGTGATATTTTACGTGTTGCTATCATTCAGGTAATGAACGAAATCGATCATATGACTTCATATATCTTTCAATCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

326

Amino Acids

36.02

Weight (kDa)

6.51

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 310	5.5e-63	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16530 AT5G16530
fragaria_vesca	FvH4_6g00660
malus_domestica	MD04G1205100.v1.1 MD04G1243800.v1.1 MD12G1259500.v1.1
prunus_persica	Prupe.6G360300_v2.0.a1 Prupe.6G360300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448071
rosa_laevigata	RLG00000025947
rosa_multiflora	Rmu_sc0005969.1_g000026
rosa_roxburghii	Rroxscaffold_6G00426230
rosa_rugosa	Rorug02G0608100
rosa_samantha	Rh3AG007600 Rh3BG007300 Rh3CG007300 Rh3DG007800
rosa_wichuraiana	Rw3G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	3 cut(s)	43, 119, 746
AccII	CGCG	2 cut(s)	218, 260
AciI	CCGC	4 cut(s)	117, 130, 208, 218
AclWI	GGATC	2 cut(s)	182, 727
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	3 cut(s)	170, 458, 797
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	374, 748
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	2 cut(s)	515, 971
AjiI	CACGTC	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	6 cut(s)	238, 291, 312, 368, 422, 806
AluI	AGCT	6 cut(s)	238, 291, 312, 368, 422, 806
Alw21I	GWGCWC	2 cut(s)	258, 563
AlwI	GGATC	2 cut(s)	182, 727
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	219, 376
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	3 cut(s)	170, 458, 797
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	377, 857
AsuC2I	CCSGG	2 cut(s)	508, 509
AsuHPI	GGTGA	3 cut(s)	139, 567, 914
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	357
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanI	GGYRCC	3 cut(s)	43, 119, 746
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	258, 563
BbvI	GCAGC	1 cut(s)	875
BccI	CCATC	2 cut(s)	3, 376
BceAI	ACGGC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	2 cut(s)	508, 509
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	3 cut(s)	118, 219, 864
BlsI	GCNGC	3 cut(s)	119, 220, 865
Bme1390I	CCNGG	2 cut(s)	508, 509
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	507
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	377, 857
BmiI	GGNNCC	4 cut(s)	45, 79, 121, 748
BmrFI	CCNGG	2 cut(s)	508, 509
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	508, 509
Bsa29I	ATCGAT	1 cut(s)	945
BsaAI	YACGTR	1 cut(s)	914
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	39, 507, 738, 867
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	1 cut(s)	849
BseCI	ATCGAT	1 cut(s)	945
BseDI	CCNNGG	4 cut(s)	39, 507, 738, 867
BseGI	GGATG	3 cut(s)	14, 633, 840
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	218, 260
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	221, 378
BshNI	GGYRCC	3 cut(s)	43, 119, 746
BshVI	ATCGAT	1 cut(s)	945
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	258, 563
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	508, 750, 855
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	221, 378
BsoBI	CYCGRG	1 cut(s)	507
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	258, 357, 563
Bsp143I	GATC	4 cut(s)	187, 391, 719, 946
Bsp19I	CCATGG	2 cut(s)	39, 867
BspACI	CCGC	4 cut(s)	117, 130, 208, 218
BspANI	GGCC	2 cut(s)	221, 378
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	2 cut(s)	218, 260
BspLI	GGNNCC	4 cut(s)	45, 79, 121, 748
BspPI	GGATC	2 cut(s)	182, 727
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	3 cut(s)	43, 119, 746
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	4 cut(s)	39, 507, 738, 867
BssMI	GATC	4 cut(s)	187, 391, 719, 946
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	3 cut(s)	39, 738, 867
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	164, 490
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	258, 420, 896
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	39, 867
BstF5I	GGATG	3 cut(s)	14, 633, 840
BstFNI	CGCG	2 cut(s)	218, 260
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	4 cut(s)	190, 394, 722, 949
BstMBI	GATC	4 cut(s)	187, 391, 719, 946
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 677, 860, 869
BstSCI	CCNGG	2 cut(s)	506, 507
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	357
BstUI	CGCG	2 cut(s)	218, 260
BstV1I	GCAGC	1 cut(s)	875
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BstZI	CGGCCG	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	945
BsuRI	GGCC	2 cut(s)	221, 378
BsuTUI	ATCGAT	1 cut(s)	945
BtgI	CCRYGG	2 cut(s)	39, 867
BtgZI	GCGATG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	14, 633, 840
BtsI	GCAGTG	3 cut(s)	119, 174, 785
BtsIMutI	CAGTG	3 cut(s)	119, 174, 785
Cac8I	GCNNGC	3 cut(s)	258, 420, 896
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	377, 857
Cfr9I	CCCGGG	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	373, 747
CviAII	CATG	8 cut(s)	40, 550, 733, 760, 769, 781, 868, 899
CviQI	GTAC	2 cut(s)	373, 747
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	4 cut(s)	189, 393, 721, 948
DpnII	GATC	4 cut(s)	187, 391, 719, 946
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	164, 490
EarI	CTCTTC	2 cut(s)	164, 490
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	39, 738, 867
Eco47I	GGWCC	1 cut(s)	857
Eco52I	CGGCCG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	3 cut(s)	39, 738, 867
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	39, 738, 867
FaeI	CATG	8 cut(s)	43, 553, 736, 763, 772, 784, 871, 902
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	8 cut(s)	39, 549, 732, 759, 768, 780, 867, 898
FauNDI	CATATG	1 cut(s)	951
Fnu4HI	GCNGC	3 cut(s)	118, 219, 864
FokI	GGATG	3 cut(s)	21, 640, 847
Fsp4HI	GCNGC	3 cut(s)	118, 219, 864
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	3 cut(s)	118, 219, 864
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	221, 378
HapII	CCGG	3 cut(s)	508, 750, 855
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	8 cut(s)	43, 553, 736, 763, 772, 784, 871, 902
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	631
HpaII	CCGG	3 cut(s)	508, 750, 855
HphI	GGTGA	3 cut(s)	139, 567, 914
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	188, 468
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	3 cut(s)	164, 183, 913
HpyCH4V	TGCA	6 cut(s)	59, 324, 418, 647, 790, 898
HpyF10VI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 677, 860, 869
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	3 cut(s)	164, 183, 913
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	8 cut(s)	43, 553, 736, 763, 772, 784, 871, 902
HspAI	GCGC	1 cut(s)	120
KasI	GGCGCC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	750
Kzo9I	GATC	4 cut(s)	187, 391, 719, 946
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	1 cut(s)	875
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	3 cut(s)	164, 183, 913
MalI	GATC	4 cut(s)	189, 393, 721, 948
MboI	GATC	4 cut(s)	187, 391, 719, 946
MboII	GAAGA	7 cut(s)	26, 91, 136, 151, 399, 477, 769
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	3 cut(s)	258, 357, 563
MluCI	AATT	6 cut(s)	170, 334, 458, 571, 660, 797
Mly113I	GGCGCC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	5 cut(s)	161, 538, 589, 709, 837
MseI	TTAA	2 cut(s)	329, 728
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	3 cut(s)	508, 750, 855
MspR9I	CCNGG	2 cut(s)	508, 509
MvnI	CGCG	2 cut(s)	218, 260
MwoI	GCNNNNNNNGC	8 cut(s)	138, 224, 266, 288, 439, 677, 860, 869
NarI	GGCGCC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	508, 509
NcoI	CCATGG	2 cut(s)	39, 867
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	4 cut(s)	187, 391, 719, 946
NlaIII	CATG	8 cut(s)	43, 553, 736, 763, 772, 784, 871, 902
NlaIV	GGNNCC	4 cut(s)	45, 79, 121, 748
NspV	TTCGAA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 821
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	119, 220, 865
PluTI	GGCGCC	1 cut(s)	123
Ppu21I	YACGTR	1 cut(s)	914
PspN4I	GGNNCC	4 cut(s)	45, 79, 121, 748
PspPI	GGNCC	2 cut(s)	377, 857
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	2 cut(s)	374, 748
RsaNI	GTAC	2 cut(s)	373, 747
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	329, 728
SatI	GCNGC	3 cut(s)	118, 219, 864
Sau3AI	GATC	4 cut(s)	187, 391, 719, 946
Sau96I	GGNCC	2 cut(s)	377, 857
ScrFI	CCNGG	2 cut(s)	508, 509
SduI	GDGCHC	3 cut(s)	258, 357, 563
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	292
SfoI	GGCGCC	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	857
SmaI	CCCGGG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	6 cut(s)	170, 334, 458, 571, 660, 797
SsiI	CCGC	4 cut(s)	117, 130, 208, 218
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	506, 507
StyI	CCWWGG	3 cut(s)	39, 738, 867
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	3 cut(s)	167, 186, 916
TaqI	TCGA	6 cut(s)	168, 186, 195, 463, 494, 945
TasI	AATT	6 cut(s)	170, 334, 458, 571, 660, 797
TauI	GCSGC	2 cut(s)	120, 221
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	2 cut(s)	329, 728
Tru9I	TTAA	2 cut(s)	329, 728
TscAI	CASTG	3 cut(s)	119, 181, 792
TseI	GCWGC	1 cut(s)	863
TspGWI	ACGGA	2 cut(s)	70, 481
TspMI	CCCGGG	1 cut(s)	507
TspRI	CASTG	3 cut(s)	119, 181, 792
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	3 cut(s)	170, 458, 797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmaI	CCCGGG	1 cut(s)	507
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.