FvH4_6g02470

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015643
Physical Location & Seq
Forward (+)
1421666 .. 1422061
396 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02470.t1

Sequence Viewer

Length: 396 bp
ATGGAGCAACTTAGAAACCACGAAAACCGTCAGCAGCGCACTGAGAGGCGAAAGAGGAGCAAAGCTGAAACACCCATCAGGATCAAGTATATTTCCAGCCCTATGATGGTTCAAGCCAACAATGCTTCAGAGTTCAGAGCAATTGTTCAGGAACTCACTGGCCAAAATTCTGATGCTACAATTCCAGATCATGGGACAGACTATTGTGAACAAGCAAACTGGGTTTCTAGCCATAGAGCTTCACAACCAGCAGATATGAAAACCCAAAACGGCGATGAGCTGATGAAATTTTCAGATGACCATGTAGTAGCTTTTGGTCAGTTTGATGAAATTAAGTTCTGGAGGGAAGTTTCAGAGAGCTTCTGCGTTTCTGAATCTCCATATGGTTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

132

Amino Acids

15.15

Weight (kDa)

5.55

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 31 - 58 5.5e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02470
prunus_persica Prupe.6G347000_v2.0.a1
pyrus_communis pycom04g20160 pycom12g22430
rosa_chinensis RchiOBHm_Chr3g0450331
rosa_laevigata RLG00000025740
rosa_multiflora Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001
rosa_roxburghii Rroxscaffold_6G00428050
rosa_rugosa Rorug02G0626900
rosa_samantha Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800
rosa_wichuraiana Rw3G002120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 2 cut(s) 166, 287
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 106, 191
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 5 cut(s) 65, 239, 280, 311, 360
AluI AGCT 5 cut(s) 65, 239, 280, 311, 360
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 166, 287
AspLEI GCGC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 162
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 83, 100
BceAI ACGGC 1 cut(s) 286
BfaI CTAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 191
Bse1I ACTGG 2 cut(s) 163, 224
BseLI CCNNNNNNNGG 2 cut(s) 106, 191
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 163, 224
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 106, 191
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 81, 187
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 2 cut(s) 163, 224
BssMI GATC 2 cut(s) 81, 187
Bst4CI ACNGT 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 11, 42
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 2 cut(s) 84, 190
BstMBI GATC 2 cut(s) 81, 187
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 39, 156
CfoI GCGC 1 cut(s) 39
CviAII CATG 3 cut(s) 191, 302, 393
CviJI RGCY 9 cut(s) 65, 99, 116, 162, 231, 239, 280, 311, 360
CviKI_1 RGCY 9 cut(s) 65, 99, 116, 162, 231, 239, 280, 311, 360
DdeI CTNAG 2 cut(s) 11, 42
DpnI GATC 2 cut(s) 83, 189
DpnII GATC 2 cut(s) 81, 187
EaeI YGGCCR 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 394
FaeI CATG 3 cut(s) 194, 305, 396
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 190, 301, 392
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 39
Hin1II CATG 3 cut(s) 194, 305, 396
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 6 cut(s) 130, 137, 172, 295, 355, 373
Hpy188III TCNNGA 4 cut(s) 79, 149, 185, 340
Hpy8I GTNNAC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 11, 42
Hsp92II CATG 3 cut(s) 194, 305, 396
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 81, 187
LmnI GCTCC 2 cut(s) 4, 57
LpnPI CCDG 8 cut(s) 64, 109, 134, 144, 198, 205, 261, 325
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 228
MalI GATC 2 cut(s) 83, 189
MboI GATC 2 cut(s) 81, 187
MfeI CAATTG 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 5 cut(s) 141, 166, 180, 287, 330
MluNI TGGCCA 1 cut(s) 162
MnlI CCTC 3 cut(s) 39, 48, 336
Mox20I TGGCCA 1 cut(s) 162
Mph1103I ATGCAT 1 cut(s) 394
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 162
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 81, 187
NlaIII CATG 3 cut(s) 194, 305, 396
NsiI ATGCAT 1 cut(s) 394
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 81, 187
SetI ASST 5 cut(s) 67, 241, 282, 313, 362
SfaNI GCATC 1 cut(s) 163
Sse9I AATT 5 cut(s) 141, 166, 180, 287, 330
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 29
TasI AATT 5 cut(s) 141, 166, 180, 287, 330
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 46, 163
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 3 cut(s) 272, 299, 342
TspRI CASTG 2 cut(s) 46, 163
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 2 cut(s) 166, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.