pycom12g22430

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015643
Physical Location & Seq
Reverse (-)
23316997 .. 23317368
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22430.1

Sequence Viewer

Length: 372 bp
ATGGAACAACTCAAAAATCACCACCAACAATCTCAGCCTGATCATCAAAGCAAAAAACGCACCAAATCAAAAGAACCCATGATCAAGTACATCTCCAGCCCTATGATGGTCCAAGCCAGTAGTGCTTCTGAGTTCAGAGCAATTGTTCAGCAATTCACAGGCCAAAATGCCAACACTCCATCTGATGAAGAATGCACTGCCACCCATGTAAAAGAACAAGCCTCGAGACCAGATACAATGATCAGATTTTCGGACCACCCTCCTCCGCCTGCGCCGGCCGCTGTTTCCGATCAGCCTATGGATGAAAACAACTTATGGGAAGCAGTTGCTGAAAGCTTGAGCGGTTACCAACCTCCATGTGTTTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

5.66

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 31 - 58 3.7e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02470
prunus_persica Prupe.6G347000_v2.0.a1
pyrus_communis pycom04g20160 pycom12g22430
rosa_chinensis RchiOBHm_Chr3g0450331
rosa_laevigata RLG00000025740
rosa_multiflora Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001
rosa_roxburghii Rroxscaffold_6G00428050
rosa_rugosa Rorug02G0626900
rosa_samantha Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800
rosa_wichuraiana Rw3G002120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 3 cut(s) 266, 279, 342
AcoI YGGCCR 1 cut(s) 276
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 2 cut(s) 160, 276
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 2 cut(s) 109, 253
AsuHPI GGTGA 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 2 cut(s) 109, 253
BccI CCATC 2 cut(s) 100, 187
BclI TGATCA 3 cut(s) 40, 81, 240
BcoDI GTCTC 1 cut(s) 220
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 2 cut(s) 109, 253
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 109, 253
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 358
BsaI GGTCTC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 47, 120
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 252
BseX3I CGGCCG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 2 cut(s) 162, 278
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 162, 278
Bso31I GGTCTC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 223
Bsp143I GATC 4 cut(s) 40, 81, 240, 289
BspACI CCGC 3 cut(s) 266, 279, 342
BspANI GGCC 2 cut(s) 162, 278
BspCNI CTCAG 2 cut(s) 46, 121
BspTNI GGTCTC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 274
BssMI GATC 4 cut(s) 40, 81, 240, 289
BstC8I GCNNGC 2 cut(s) 270, 276
BstDEI CTNAG 2 cut(s) 33, 129
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 4 cut(s) 43, 84, 243, 292
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 4 cut(s) 40, 81, 240, 289
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 3 cut(s) 57, 122, 278
BstPI GGTNACC 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 162, 278
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 270, 276
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 109, 253
Csp6I GTAC 1 cut(s) 88
CviAII CATG 3 cut(s) 79, 206, 357
CviJI RGCY 8 cut(s) 37, 99, 116, 162, 221, 278, 295, 336
CviKI_1 RGCY 8 cut(s) 37, 99, 116, 162, 221, 278, 295, 336
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 2 cut(s) 33, 129
DpnI GATC 4 cut(s) 42, 83, 242, 291
DpnII GATC 4 cut(s) 40, 81, 240, 289
EaeI YGGCCR 1 cut(s) 276
EagI CGGCCG 1 cut(s) 276
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 109, 253
Eco52I CGGCCG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 223
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
FaeI CATG 3 cut(s) 82, 209, 360
FaiI YATR 7 cut(s) 80, 104, 207, 299, 316, 358, 366
FatI CATG 3 cut(s) 78, 205, 356
FbaI TGATCA 3 cut(s) 40, 81, 240
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 279
GlaI GCGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 2 cut(s) 162, 278
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 82, 209, 360
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 334
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 11
Hpy188I TCNGA 6 cut(s) 130, 137, 184, 245, 253, 289
Hpy188III TCNNGA 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 122, 278
HpyF3I CTNAG 2 cut(s) 33, 129
Hsp92II CATG 3 cut(s) 82, 209, 360
HspAI GCGC 1 cut(s) 272
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Ksp22I TGATCA 3 cut(s) 40, 81, 240
Kzo9I GATC 4 cut(s) 40, 81, 240, 289
LpnPI CCDG 7 cut(s) 51, 109, 130, 144, 243, 282, 288
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 42, 83, 242, 291
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 40, 81, 240, 289
MboII GAAGA 1 cut(s) 200
MfeI CAATTG 1 cut(s) 141
MluCI AATT 2 cut(s) 141, 152
MnlI CCTC 4 cut(s) 232, 270, 273, 363
MroNI GCCGGC 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 57, 122, 278
NaeI GCCGGC 1 cut(s) 276
NdeII GATC 4 cut(s) 40, 81, 240, 289
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 3 cut(s) 82, 209, 360
PaeR7I CTCGAG 1 cut(s) 223
PctI GAATGC 1 cut(s) 197
PdiI GCCGGC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 109, 253
PstNI CAGNNNCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 4 cut(s) 40, 81, 240, 289
Sau96I GGNCC 2 cut(s) 109, 253
SetI ASST 2 cut(s) 338, 355
Sfr274I CTCGAG 1 cut(s) 223
SinI GGWCC 2 cut(s) 109, 253
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 223, 337
SmoI CTYRAG 2 cut(s) 223, 337
Sse9I AATT 2 cut(s) 141, 152
SsiI CCGC 3 cut(s) 266, 279, 342
TaqI TCGA 1 cut(s) 224
TasI AATT 2 cut(s) 141, 152
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 281
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 201, 318
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 109, 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.