VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g02470 |
| prunus_persica | Prupe.6G347000_v2.0.a1 |
| pyrus_communis | pycom04g20160 pycom12g22430 |
| rosa_chinensis | RchiOBHm_Chr3g0450331 |
| rosa_laevigata | RLG00000025740 |
| rosa_multiflora | Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00428050 |
| rosa_rugosa | Rorug02G0626900 |
| rosa_samantha | Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800 |
| rosa_wichuraiana | Rw3G002120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AgsI | TTSAA | 2 cut(s) | 167, 240 |
| AluBI | AGCT | 6 cut(s) | 56, 210, 236, 290, 304, 345 |
| AluI | AGCT | 6 cut(s) | 56, 210, 236, 290, 304, 345 |
| AoxI | GGCC | 2 cut(s) | 148, 271 |
| ApeKI | GCWGC | 1 cut(s) | 207 |
| AspS9I | GGNCC | 2 cut(s) | 97, 272 |
| AsuHPI | GGTGA | 2 cut(s) | 8, 265 |
| AvaII | GGWCC | 1 cut(s) | 97 |
| BbvI | GCAGC | 1 cut(s) | 219 |
| BccI | CCATC | 1 cut(s) | 88 |
| BclI | TGATCA | 3 cut(s) | 31, 178, 298 |
| BfmI | CTRYAG | 1 cut(s) | 285 |
| BisI | GCNGC | 1 cut(s) | 208 |
| BlsI | GCNGC | 1 cut(s) | 209 |
| Bme18I | GGWCC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 272 |
| BpmI | CTGGAG | 1 cut(s) | 67 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse3DI | GCAATG | 1 cut(s) | 115 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseMI | GCAATG | 1 cut(s) | 115 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseRI | GAGGAG | 1 cut(s) | 267 |
| BseXI | GCAGC | 1 cut(s) | 219 |
| BseYI | CCCAGC | 1 cut(s) | 210 |
| BshFI | GGCC | 2 cut(s) | 150, 273 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsnI | GGCC | 2 cut(s) | 150, 273 |
| Bsp143I | GATC | 3 cut(s) | 31, 178, 298 |
| BspANI | GGCC | 2 cut(s) | 150, 273 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BsrDI | GCAATG | 1 cut(s) | 115 |
| BssMI | GATC | 3 cut(s) | 31, 178, 298 |
| BstC8I | GCNNGC | 1 cut(s) | 106 |
| BstDEI | CTNAG | 2 cut(s) | 117, 305 |
| BstKTI | GATC | 3 cut(s) | 34, 181, 301 |
| BstMBI | GATC | 3 cut(s) | 31, 178, 298 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 242 |
| BstSFI | CTRYAG | 1 cut(s) | 285 |
| BstV1I | GCAGC | 1 cut(s) | 219 |
| BsuRI | GGCC | 2 cut(s) | 150, 273 |
| Cac8I | GCNNGC | 1 cut(s) | 106 |
| CciI | TCATGA | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 272 |
| CviAII | CATG | 2 cut(s) | 194, 230 |
| DdeI | CTNAG | 2 cut(s) | 117, 305 |
| DpnI | GATC | 3 cut(s) | 33, 180, 300 |
| DpnII | GATC | 3 cut(s) | 31, 178, 298 |
| Eco47I | GGWCC | 1 cut(s) | 97 |
| EcoO109I | RGGNCCY | 1 cut(s) | 272 |
| FaeI | CATG | 2 cut(s) | 197, 233 |
| FaiI | YATR | 8 cut(s) | 9, 78, 92, 195, 231, 325, 375, 379 |
| FatI | CATG | 2 cut(s) | 193, 229 |
| FbaI | TGATCA | 3 cut(s) | 31, 178, 298 |
| Fnu4HI | GCNGC | 1 cut(s) | 208 |
| Fsp4HI | GCNGC | 1 cut(s) | 208 |
| GluI | GCNGC | 1 cut(s) | 208 |
| GsaI | CCCAGC | 1 cut(s) | 214 |
| GsuI | CTGGAG | 1 cut(s) | 67 |
| HaeIII | GGCC | 2 cut(s) | 150, 273 |
| Hin1II | CATG | 2 cut(s) | 197, 233 |
| HindIII | AAGCTT | 2 cut(s) | 234, 343 |
| HinfI | GANTC | 1 cut(s) | 155 |
| HphI | GGTGA | 2 cut(s) | 8, 265 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 118, 125, 268 |
| Hpy188III | TCNNGA | 3 cut(s) | 173, 194, 296 |
| HpyAV | CCTTC | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 1 cut(s) | 338 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 242 |
| HpyF3I | CTNAG | 2 cut(s) | 117, 305 |
| Hsp92II | CATG | 2 cut(s) | 197, 233 |
| Ksp22I | TGATCA | 3 cut(s) | 31, 178, 298 |
| Kzo9I | GATC | 3 cut(s) | 31, 178, 298 |
| LpnPI | CCDG | 5 cut(s) | 97, 118, 132, 196, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 219 |
| MalI | GATC | 3 cut(s) | 33, 180, 300 |
| MboI | GATC | 3 cut(s) | 31, 178, 298 |
| MboII | GAAGA | 2 cut(s) | 210, 213 |
| MfeI | CAATTG | 1 cut(s) | 129 |
| MluCI | AATT | 1 cut(s) | 129 |
| MnlI | CCTC | 4 cut(s) | 33, 252, 285, 288 |
| MseI | TTAA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 1 cut(s) | 210 |
| MunI | CAATTG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 242 |
| NdeII | GATC | 3 cut(s) | 31, 178, 298 |
| NlaIII | CATG | 2 cut(s) | 197, 233 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PfeI | GAWTC | 1 cut(s) | 155 |
| PkrI | GCNGC | 1 cut(s) | 209 |
| PspFI | CCCAGC | 1 cut(s) | 210 |
| PspPI | GGNCC | 2 cut(s) | 97, 272 |
| PvuII | CAGCTG | 1 cut(s) | 210 |
| SaqAI | TTAA | 1 cut(s) | 72 |
| SatI | GCNGC | 1 cut(s) | 208 |
| Sau3AI | GATC | 3 cut(s) | 31, 178, 298 |
| Sau96I | GGNCC | 2 cut(s) | 97, 272 |
| SetI | ASST | 8 cut(s) | 25, 58, 212, 238, 263, 292, 306, 347 |
| SfcI | CTRYAG | 1 cut(s) | 285 |
| SinI | GGWCC | 1 cut(s) | 97 |
| Sse9I | AATT | 1 cut(s) | 129 |
| SspI | AATATT | 1 cut(s) | 163 |
| TasI | AATT | 1 cut(s) | 129 |
| TfiI | GAWTC | 1 cut(s) | 155 |
| Tru1I | TTAA | 1 cut(s) | 72 |
| Tru9I | TTAA | 1 cut(s) | 72 |
| TseI | GCWGC | 1 cut(s) | 207 |
| TspDTI | ATGAA | 3 cut(s) | 213, 246, 327 |
| VpaK11BI | GGWCC | 1 cut(s) | 97 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |