pycom04g20160

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015643
Physical Location & Seq
Forward (+)
21668168 .. 21668554
387 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20160.1

Sequence Viewer

Length: 387 bp
ATGGAACCACTCAAAAATCATCACCGACAATCTCAGCCTGAGCAGAGCAAAAAACCCACCAAATCAAAAGCACCTATGATCAAGTACATCTCCAGCCCTATGATGGTCCAAGCCAGAAGTGCTTCTGAGTTCAGAGCAATTGTTCAACAATTCACAGGCCAAAATTCCAACACTGCCCTTGATGAAGATTGCACTACCGCTCATGAACAAGAACAAGCTGGATGGGTTACTTCTTCTAAATTCCAAGCTTCGAAACCCGGTACGATGATCAGGTTTTCAAACCACCCTCCGCCGGCGGTTGTTCTCGATCAGATGGATGAAAACAACTTATGGGAAGCAGTTGCTGAAAGCTTTAGTAGTTACCAACCTCCATGTGTTTATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

129

Amino Acids

14.39

Weight (kDa)

6.4

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 30 - 57 3e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02470
prunus_persica Prupe.6G347000_v2.0.a1
pyrus_communis pycom04g20160 pycom12g22430
rosa_chinensis RchiOBHm_Chr3g0450331
rosa_laevigata RLG00000025740
rosa_multiflora Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001
rosa_roxburghii Rroxscaffold_6G00428050
rosa_rugosa Rorug02G0626900
rosa_samantha Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800
rosa_wichuraiana Rw3G002120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 3 cut(s) 198, 290, 296
AcsI RAATTY 2 cut(s) 163, 239
AfaI GTAC 2 cut(s) 86, 262
AfiI CCNNNNNNNGG 2 cut(s) 103, 292
AgsI TTSAA 2 cut(s) 146, 279
AluBI AGCT 3 cut(s) 218, 248, 351
AluI AGCT 3 cut(s) 218, 248, 351
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 163, 239
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 106
BccI CCATC 3 cut(s) 97, 216, 307
BclI TGATCA 2 cut(s) 78, 267
BcnI CCSGG 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 292
Bse118I RCCGGY 1 cut(s) 292
BseGI GGATG 2 cut(s) 227, 322
BseLI CCNNNNNNNGG 2 cut(s) 103, 292
BseMII CTCAG 3 cut(s) 30, 47, 117
BshFI GGCC 1 cut(s) 159
BsiSI CCGG 2 cut(s) 258, 293
BslI CCNNNNNNNGG 2 cut(s) 103, 292
BsnI GGCC 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 3 cut(s) 78, 267, 307
BspACI CCGC 3 cut(s) 198, 290, 296
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 3 cut(s) 31, 46, 118
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
BssMI GATC 3 cut(s) 78, 267, 307
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 33, 39, 126
BstF5I GGATG 2 cut(s) 227, 322
BstKTI GATC 3 cut(s) 81, 270, 310
BstMBI GATC 3 cut(s) 78, 267, 307
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 256
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 227, 322
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 85, 261
CviAII CATG 2 cut(s) 203, 372
CviJI RGCY 7 cut(s) 37, 96, 113, 159, 218, 248, 351
CviKI_1 RGCY 7 cut(s) 37, 96, 113, 159, 218, 248, 351
CviQI GTAC 2 cut(s) 85, 261
DdeI CTNAG 3 cut(s) 33, 39, 126
DpnI GATC 3 cut(s) 80, 269, 309
DpnII GATC 3 cut(s) 78, 267, 307
EciI GGCGGA 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 106
FaeI CATG 2 cut(s) 206, 375
FaiI YATR 6 cut(s) 77, 101, 204, 331, 373, 381
FatI CATG 2 cut(s) 202, 371
FbaI TGATCA 2 cut(s) 78, 267
FokI GGATG 2 cut(s) 234, 329
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 159
HapII CCGG 2 cut(s) 258, 293
Hin1II CATG 2 cut(s) 206, 375
HindIII AAGCTT 2 cut(s) 246, 349
HpaII CCGG 2 cut(s) 258, 293
HphI GGTGA 1 cut(s) 14
Hpy188I TCNGA 3 cut(s) 127, 134, 312
Hpy188III TCNNGA 2 cut(s) 203, 305
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 3 cut(s) 33, 39, 126
Hsp92II CATG 2 cut(s) 206, 375
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Ksp22I TGATCA 2 cut(s) 78, 267
Kzo9I GATC 3 cut(s) 78, 267, 307
LpnPI CCDG 8 cut(s) 51, 106, 127, 141, 204, 256, 271, 306
MaeIII GTNAC 2 cut(s) 226, 359
MalI GATC 3 cut(s) 80, 269, 309
MbiI CCGCTC 1 cut(s) 200
MboI GATC 3 cut(s) 78, 267, 307
MboII GAAGA 2 cut(s) 197, 225
MfeI CAATTG 1 cut(s) 138
MluCI AATT 4 cut(s) 138, 149, 163, 239
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 2 cut(s) 297, 378
MreI CGCCGGCG 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 121
MspI CCGG 2 cut(s) 258, 293
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 294
NciI CCSGG 1 cut(s) 258
NdeII GATC 3 cut(s) 78, 267, 307
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 2 cut(s) 206, 375
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 251
PagI TCATGA 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 86, 262
RsaNI GTAC 2 cut(s) 85, 261
Sau3AI GATC 3 cut(s) 78, 267, 307
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 258
SetI ASST 6 cut(s) 76, 220, 250, 275, 353, 370
SfuI TTCGAA 1 cut(s) 251
SgrAI CRCCGGYG 1 cut(s) 292
SinI GGWCC 1 cut(s) 106
Sse9I AATT 4 cut(s) 138, 149, 163, 239
SsiI CCGC 3 cut(s) 198, 290, 296
StyD4I CCNGG 1 cut(s) 256
TaqI TCGA 2 cut(s) 251, 306
TasI AATT 4 cut(s) 138, 149, 163, 239
TatI WGTACW 1 cut(s) 84
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 198, 219, 333
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 163, 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.