Rorug02G0626900

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015643
Physical Location & Seq
Forward (+)
74244526 .. 74247125
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0626900.1

Sequence Viewer

Length: 837 bp
ATGGAATCAAGCAAAAAGCGAAAAGGGGCGAAGAGACGTCACCACACAGCTTCAAATGAAAAACCCAAAGCTGAAAGAGTCAATGAAAACAAAGAAGAACAAAACCCAAAAGCTTCTAAGCGCAGAAAATCTCAGGGACCGGTCTCCAACTCCTCCTCCAGTTTTCTCGATAAGATGAAAGCTAAGCTGTCAGGAGGGCACTTCAGAATGCTTAATGAGAAGCTCTACACTTGCACTGGGGAAGAGGCGCTTGAGTATTTCAATGACGACCCAACTTTGTTTGATACATACCATGCAGGATATCAAGAGCAAATGTCACATTGGCCTGAGCTGCCGGTGAATATAATCATAAAATGGCTAAAAGATCACAGCCCGTCTCTAGTTGTGGCTGATTTTGGATGTGGGGATGCACGCCTTGCAAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGATCTCATCTCAAATGATCCTTCAGTAATTTCTTGTGATATGGCAAATACTCCCCTTTGCTCTTCATCAGTAGATGTTGCTGTATTCTGCCTGTCATTGATGGGGACTAATTTCCCAAGTTACCTTAACGAAGCACACAGAATTCTTAAGCCACGTGGCTGGCTTTTGATAGCAGAAGTGAAGAGCAGATTTGATTCCAATACTGGAGGAGCAGACCCCAAGAAGTTCACAAAAGCAGTTTGTGATTTAGGATTTACCTCTGTGGCGAAGGACTTCTCAAATAAGATGTTTATATTGTTTTACTTCAAGAAAAAGGAGGAGCAAATTTCGAAGAAAAAGGATATTGATTGGCCTGAGTTGAAACCTTGTCTGTATAAGCGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

278

Amino Acids

31.61

Weight (kDa)

9.33

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_8 PF05148 57 - 278 7.7e-80 Hypothetical methyltransferase
Methyltransf_11 PF08241 131 - 207 8.1e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02470
prunus_persica Prupe.6G347000_v2.0.a1
pyrus_communis pycom04g20160 pycom12g22430
rosa_chinensis RchiOBHm_Chr3g0450331
rosa_laevigata RLG00000025740
rosa_multiflora Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001
rosa_roxburghii Rroxscaffold_6G00428050
rosa_rugosa Rorug02G0626900
rosa_samantha Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800
rosa_wichuraiana Rw3G002120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 40
AciI CCGC 1 cut(s) 832
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 2 cut(s) 591, 774
AcuI CTGAAG 2 cut(s) 187, 456
AcvI CACGTG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 37
AflII CTTAAG 1 cut(s) 596
AgeI ACCGGT 1 cut(s) 139
AgsI TTSAA 4 cut(s) 54, 262, 757, 811
AluBI AGCT 7 cut(s) 50, 71, 113, 182, 187, 223, 331
AluI AGCT 7 cut(s) 50, 71, 113, 182, 187, 223, 331
Alw26I GTCTC 3 cut(s) 28, 148, 381
AlwI GGATC 1 cut(s) 461
AoxI GGCC 2 cut(s) 323, 800
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 2 cut(s) 591, 774
AsiGI ACCGGT 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 3 cut(s) 123, 250, 831
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 32, 349
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 201
BbrPI CACGTG 1 cut(s) 605
BbvI GCAGC 1 cut(s) 318
BccI CCATC 1 cut(s) 544
BcoDI GTCTC 3 cut(s) 28, 148, 381
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 2 cut(s) 251, 832
BfrI CTTAAG 1 cut(s) 596
BisI GCNGC 2 cut(s) 332, 832
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 2 cut(s) 333, 833
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 138
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 1 cut(s) 246
BpmI CTGGAG 2 cut(s) 142, 675
Bpu10I CCTNAGC 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 605
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 148
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse118I RCCGGY 2 cut(s) 139, 334
Bse1I ACTGG 3 cut(s) 159, 241, 658
BseGI GGATG 2 cut(s) 404, 412
BseMII CTCAG 3 cut(s) 146, 318, 795
BseNI ACTGG 3 cut(s) 159, 241, 658
BseRI GAGGAG 4 cut(s) 142, 145, 672, 782
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 2 cut(s) 325, 802
BshTI ACCGGT 1 cut(s) 139
BsiSI CCGG 2 cut(s) 140, 335
BslFI GGGAC 2 cut(s) 150, 568
BsmAI GTCTC 3 cut(s) 28, 148, 381
BsmBI CGTCTC 2 cut(s) 28, 381
BsmFI GGGAC 2 cut(s) 150, 568
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 325, 802
Bso31I GGTCTC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 779
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 364, 451, 466
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 832
BspANI GGCC 2 cut(s) 325, 802
BspCNI CTCAG 3 cut(s) 145, 319, 796
BspLI GGNNCC 1 cut(s) 138
BspPI GGATC 1 cut(s) 461
BspQI GCTCTTC 2 cut(s) 517, 626
BspT104I TTCGAA 1 cut(s) 779
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 139, 334
BsrI ACTGG 3 cut(s) 159, 241, 658
BssAI RCCGGY 2 cut(s) 139, 334
BssMI GATC 3 cut(s) 364, 451, 466
BssNI GRCGYC 1 cut(s) 37
Bst6I CTCTTC 4 cut(s) 26, 237, 517, 626
BstACI GRCGYC 1 cut(s) 37
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 2 cut(s) 412, 611
BstDEI CTNAG 5 cut(s) 117, 132, 183, 327, 804
BstF5I GGATG 2 cut(s) 404, 412
BstH2I RGCGCY 2 cut(s) 251, 832
BstHHI GCGC 3 cut(s) 123, 250, 831
BstKTI GATC 3 cut(s) 367, 454, 469
BstMAI GTCTC 3 cut(s) 28, 148, 381
BstMBI GATC 3 cut(s) 364, 451, 466
BstMWI GCNNNNNNNGC 2 cut(s) 331, 416
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 318
BstXI CCANNNNNNTGG 1 cut(s) 609
BsuRI GGCC 2 cut(s) 325, 802
BtsCI GGATG 2 cut(s) 404, 412
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 412, 611
CfoI GCGC 3 cut(s) 123, 250, 831
Cfr10I RCCGGY 2 cut(s) 139, 334
Cfr13I GGNCC 1 cut(s) 137
CspAI ACCGGT 1 cut(s) 139
CviAII CATG 1 cut(s) 293
DdeI CTNAG 5 cut(s) 117, 132, 183, 327, 804
DpnI GATC 3 cut(s) 366, 453, 468
DpnII GATC 3 cut(s) 364, 451, 466
Eam1104I CTCTTC 4 cut(s) 26, 237, 517, 626
EarI CTCTTC 4 cut(s) 26, 237, 517, 626
Eco31I GGTCTC 1 cut(s) 148
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 187, 456
Eco72I CACGTG 1 cut(s) 605
EcoRI GAATTC 1 cut(s) 591
EcoRV GATATC 1 cut(s) 302
Esp3I CGTCTC 2 cut(s) 28, 381
FaeI CATG 1 cut(s) 296
FaiI YATR 7 cut(s) 289, 294, 344, 350, 491, 743, 825
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 2 cut(s) 150, 568
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 332, 832
FokI GGATG 2 cut(s) 411, 419
Fsp4HI GCNGC 2 cut(s) 332, 832
FspBI CTAG 1 cut(s) 380
GlaI GCGC 3 cut(s) 122, 249, 830
GluI GCNGC 2 cut(s) 332, 832
GsuI CTGGAG 2 cut(s) 142, 675
HaeII RGCGCY 2 cut(s) 251, 832
HaeIII GGCC 2 cut(s) 325, 802
HapII CCGG 2 cut(s) 140, 335
HhaI GCGC 3 cut(s) 123, 250, 831
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 3 cut(s) 121, 248, 829
HinP1I GCGC 3 cut(s) 121, 248, 829
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 3 cut(s) 5, 78, 644
HpaII CCGG 2 cut(s) 140, 335
HphI GGTGA 2 cut(s) 32, 349
Hpy166II GTNNAC 1 cut(s) 678
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 4 cut(s) 167, 192, 305, 757
Hpy8I GTNNAC 1 cut(s) 678
HpyAV CCTTC 2 cut(s) 480, 712
HpyCH4IV ACGT 2 cut(s) 37, 604
HpyCH4V TGCA 4 cut(s) 234, 296, 410, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 416
HpyF3I CTNAG 5 cut(s) 117, 132, 183, 327, 804
HpySE526I ACGT 2 cut(s) 37, 604
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 3 cut(s) 121, 248, 829
Kzo9I GATC 3 cut(s) 364, 451, 466
LguI GCTCTTC 2 cut(s) 517, 626
LmnI GCTCC 2 cut(s) 659, 769
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 1 cut(s) 397
MaeI CTAG 1 cut(s) 380
MaeII ACGT 2 cut(s) 37, 604
MaeIII GTNAC 3 cut(s) 38, 315, 569
MalI GATC 3 cut(s) 366, 453, 468
MboI GATC 3 cut(s) 364, 451, 466
MboII GAAGA 7 cut(s) 43, 107, 254, 442, 504, 643, 793
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 4 cut(s) 477, 559, 591, 774
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 163, 166, 188, 238, 650, 718, 760
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 3 cut(s) 213, 576, 597
MspA1I CMGCKG 1 cut(s) 834
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 140, 335
Mva1269I GAATGC 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 331, 416
NdeII GATC 3 cut(s) 364, 451, 466
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 38, 315
NspV TTCGAA 1 cut(s) 779
PciSI GCTCTTC 2 cut(s) 517, 626
PctI GAATGC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 2 cut(s) 5, 644
PinAI ACCGGT 1 cut(s) 139
PkrI GCNGC 2 cut(s) 333, 833
PleI GAGTC 1 cut(s) 86
PmaCI CACGTG 1 cut(s) 605
PmlI CACGTG 1 cut(s) 605
PpsI GAGTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 605
PspCI CACGTG 1 cut(s) 605
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 137
SapI GCTCTTC 2 cut(s) 517, 626
SaqAI TTAA 3 cut(s) 213, 576, 597
SatI GCNGC 2 cut(s) 332, 832
Sau3AI GATC 3 cut(s) 364, 451, 466
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 201
SfaNI GCATC 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 251, 596
SmoI CTYRAG 2 cut(s) 251, 596
Sse9I AATT 4 cut(s) 477, 559, 591, 774
SsiI CCGC 1 cut(s) 832
SspMI CTAG 1 cut(s) 380
TaiI ACGT 2 cut(s) 40, 607
TaqI TCGA 2 cut(s) 168, 779
TasI AATT 4 cut(s) 477, 559, 591, 774
TauI GCSGC 1 cut(s) 834
TfiI GAWTC 2 cut(s) 5, 644
Tru1I TTAA 3 cut(s) 213, 576, 597
Tru9I TTAA 3 cut(s) 213, 576, 597
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 38, 315
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 2 cut(s) 38, 315
TspDTI ATGAA 4 cut(s) 72, 99, 191, 504
TspRI CASTG 1 cut(s) 241
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 2 cut(s) 591, 774
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 380
ZraI GACGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.