RLG00000025740

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015643
Physical Location & Seq
Reverse (-)
47988229 .. 47988612
384 bp
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UTR
Exon/CDS
Intron
RLM00000025740

Sequence Viewer

Length: 384 bp
ATGGAGCAACTTAGAAACCCTGAAAATCGTCAGCAGAGAGCTCAGAGGCAAAAGAGGAGCAAAACTGAAACACCCATTAAGATCAAGTATATTTCCAGCCCTATGATGGTTCAAGCCAACAATGCTTCAGAGTTCAGAGCAATTGTTCAGGAACTCACAGGCCAAAATTCTGACACTACCATTCCAGATGGAACAAACCAAGCAAGCTGGGTTTCTAACCATAGAGCTTCACAATCAGCAAATATGAAAACCCAAAACGCTGATGAGCTGATGAAATTTTCAGATAACCGTGTAGAAGTTTTCAGTCAGTTTGATGAAATTAAGTTCTGGAAGGAAGTTTCAGAGAGCTTCTGCGCTACCGAATCTCCATATGGTTATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

128

Amino Acids

14.65

Weight (kDa)

6.59

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 31 - 58 7.6e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015643)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02470
prunus_persica Prupe.6G347000_v2.0.a1
pyrus_communis pycom04g20160 pycom12g22430
rosa_chinensis RchiOBHm_Chr3g0450331
rosa_laevigata RLG00000025740
rosa_multiflora Rmu_sc0005298.1_g000003 Rmu_sc0006063.1_g000001 Rmu_sc0033380.1_g000001
rosa_roxburghii Rroxscaffold_6G00428050
rosa_rugosa Rorug02G0626900
rosa_samantha Rh3AG027200 Rh3BG027800 Rh3CG026700 Rh3DG027800
rosa_wichuraiana Rw3G002120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 166, 275
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 5 cut(s) 41, 207, 227, 268, 348
AluI AGCT 5 cut(s) 41, 207, 227, 268, 348
Alw21I GWGCWC 1 cut(s) 43
AoxI GGCC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 166, 275
AspLEI GCGC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BccI CCATC 2 cut(s) 100, 182
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 55
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 11, 42
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 356
CviJI RGCY 8 cut(s) 41, 99, 116, 162, 207, 227, 268, 348
CviKI_1 RGCY 8 cut(s) 41, 99, 116, 162, 207, 227, 268, 348
DdeI CTNAG 2 cut(s) 11, 42
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 43
FaiI YATR 8 cut(s) 90, 104, 222, 245, 370, 372, 378, 382
FauNDI CATATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 43
GlaI GCGC 1 cut(s) 355
GsaI CCCAGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 356
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 1 cut(s) 362
Hpy188I TCNGA 6 cut(s) 45, 130, 137, 172, 283, 343
Hpy188III TCNNGA 3 cut(s) 149, 185, 328
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 2 cut(s) 11, 42
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 4, 57
LpnPI CCDG 7 cut(s) 33, 109, 134, 144, 193, 198, 313
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 4 cut(s) 141, 166, 275, 318
MnlI CCTC 2 cut(s) 39, 48
MseI TTAA 2 cut(s) 78, 321
MunI CAATTG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 370
NdeII GATC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 207
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 78, 321
Sau3AI GATC 1 cut(s) 81
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 43, 209, 229, 270, 350
Sse9I AATT 4 cut(s) 141, 166, 275, 318
SstI GAGCTC 1 cut(s) 43
TaaI ACNGT 1 cut(s) 290
TasI AATT 4 cut(s) 141, 166, 275, 318
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 78, 321
Tru9I TTAA 2 cut(s) 78, 321
TspDTI ATGAA 3 cut(s) 260, 287, 330
XapI RAATTY 2 cut(s) 166, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.