FvH4_6g03670

Mediator-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014757
Physical Location & Seq
Forward (+)
1998610 .. 2000076
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03670.t1

Sequence Viewer

Length: 900 bp
ATGCCGTGGCCTTTGCTAAAATGGATCATGTATACTTCGTCTTCGTCTTCGTCGTCCTCTGAAGATTTCGACGAAGAGGAAGAGGAAGGCATAAATAAGAAGGAAAATGAGCATCGTCGTGAGTCTAACAAACAAGGAGAACAAAATAACGATGAAGACTCCGACGATGATGACTTTTCCTACGAGCCTCAGGAAGAAGAGACATCCAACTCCTCCGACTACACTTTCACAATCGATGAACCGCGCAGAAAACGACGTCGCATTGACAACAAGGAATTCTCACCGAACGTGACGAGTTTCAAACGCCGTAAGAGGGTTTGGAGCAAGGAGGACGAGCTAGAGCTCCTGAAGAATTTCCTCGACTACAGAACCAGACCTAGGACGGCGAACGAAGCACCGTCGTTTTACGACGAGGTTAACCCCAAGTTCAAGGAGCAATACACCAAGCGAAAGCTGGCTGAGAAGCTTGGAAGGTTGAAGAAGAAGTACCGAAATGTAGTGAAGAAAATGATGAACAACAATGGGACTGAGTTTCGATTCAGAAACCCACACGACAGTGCCATTTTCGATATTTCACATAGGATTTGGGCGGAATCGCCTCTTTACAATATTCAGGAGAAGAATGTGGTGGTGGATTCACATGATGTGGGGAGTAGCAAAACGTCTTTCGATGGGAAGCATGGAGATGATGAGGGTAACACTGACGTGCGAGGGATGATAATCGGGTTGGCGATGAATCCGATACCGCTCAGCTTAAGCAACTACGGCTGCCGTGGAGGAGATGTGGCGGATGAGAAGTGGAGGGAGCAGCAGATACTGGAGTTAGAAGCGTACTCGAAGAGGTTGGAGTTGGTTCAACAACAGGTTAAGGCCGCTTTGGATGACTTGCGTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

300

Amino Acids

35.11

Weight (kDa)

5.44

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 104 - 196 1.2e-23 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 244
AciI CCGC 5 cut(s) 242, 590, 746, 788, 873
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 2 cut(s) 275, 352
AcuI CTGAAG 2 cut(s) 81, 368
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 2 cut(s) 488, 833
AfiI CCNNNNNNNGG 2 cut(s) 313, 378
AflII CTTAAG 1 cut(s) 754
AgsI TTSAA 5 cut(s) 301, 430, 478, 857, 894
AjiI CACGTC 1 cut(s) 706
AleI CACNNNNGTG 2 cut(s) 555, 704
AluBI AGCT 5 cut(s) 337, 343, 454, 466, 753
AluI AGCT 5 cut(s) 337, 343, 454, 466, 753
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 817
AoxI GGCC 2 cut(s) 8, 870
ApeKI GCWGC 2 cut(s) 768, 808
ApoI RAATTY 2 cut(s) 275, 352
Asp700I GAANNNNTTC 1 cut(s) 353
AspA2I CCTAGG 1 cut(s) 377
AspLEI GCGC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 273
AvrII CCTAGG 1 cut(s) 377
AxyI CCTNAGG 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 806, 839
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
BbsI GAAGAC 3 cut(s) 33, 39, 162
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 755, 820
BccI CCATC 1 cut(s) 665
BceAI ACGGC 4 cut(s) 291, 399, 756, 781
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 338, 378
BfmI CTRYAG 1 cut(s) 364
BfrI CTTAAG 1 cut(s) 754
BisI GCNGC 3 cut(s) 769, 809, 873
BlnI CCTAGG 1 cut(s) 377
BlpI GCTNAGC 1 cut(s) 749
BlsI GCNGC 3 cut(s) 770, 810, 874
BmgBI CACGTC 1 cut(s) 706
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 3 cut(s) 33, 39, 162
BpmI CTGGAG 1 cut(s) 839
Bpu1102I GCTNAGC 1 cut(s) 749
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 5, 377, 772
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 378
Bse1I ACTGG 1 cut(s) 822
Bse21I CCTNAGG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 719
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 5, 377, 772
BseGI GGATG 4 cut(s) 203, 720, 796, 886
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 2 cut(s) 313, 378
BseMII CTCAG 4 cut(s) 203, 450, 519, 763
BseNI ACTGG 1 cut(s) 822
BseRI GAGGAG 2 cut(s) 202, 792
BseXI GCAGC 2 cut(s) 755, 820
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 10, 872
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 313, 378
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 2 cut(s) 10, 872
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 24
Bsp1720I GCTNAGC 1 cut(s) 749
BspACI CCGC 5 cut(s) 242, 590, 746, 788, 873
BspANI GGCC 2 cut(s) 10, 872
BspCNI CTCAG 4 cut(s) 202, 451, 520, 762
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 748
BsrI ACTGG 1 cut(s) 822
BssECI CCNNGG 3 cut(s) 5, 377, 772
BssMI GATC 1 cut(s) 24
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 33
Bst4CI ACNGT 2 cut(s) 399, 557
Bst6I CTCTTC 4 cut(s) 69, 75, 192, 833
BstACI GRCGYC 1 cut(s) 256
BstAFI CTTAAG 1 cut(s) 754
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 4 cut(s) 189, 459, 528, 749
BstDSI CCRYGG 2 cut(s) 5, 772
BstF5I GGATG 4 cut(s) 203, 720, 796, 886
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 392, 765
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 755, 820
BstV2I GAAGAC 3 cut(s) 33, 39, 162
BstZ17I GTATAC 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 2 cut(s) 10, 872
BsuTUI ATCGAT 1 cut(s) 234
BtgI CCRYGG 2 cut(s) 5, 772
BtgZI GCGATG 1 cut(s) 746
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 4 cut(s) 203, 720, 796, 886
BtsIMutI CAGTG 2 cut(s) 562, 699
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 817
CfoI GCGC 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 2 cut(s) 487, 832
CviAII CATG 3 cut(s) 28, 641, 680
CviQI GTAC 2 cut(s) 487, 832
DdeI CTNAG 4 cut(s) 189, 459, 528, 749
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eam1104I CTCTTC 4 cut(s) 69, 75, 192, 833
EarI CTCTTC 4 cut(s) 69, 75, 192, 833
EciI GGCGGA 2 cut(s) 605, 803
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 81, 368
Eco81I CCTNAGG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 31, 644, 683
FaiI YATR 6 cut(s) 29, 33, 92, 579, 642, 681
FaqI GGGAC 1 cut(s) 538
FatI CATG 3 cut(s) 27, 640, 679
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 769, 809, 873
FokI GGATG 4 cut(s) 190, 727, 803, 893
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 769, 809, 873
FspBI CTAG 2 cut(s) 338, 378
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 769, 809, 873
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 2 cut(s) 10, 872
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 3 cut(s) 31, 644, 683
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 6 cut(s) 122, 158, 537, 593, 635, 736
HpaI GTTAAC 1 cut(s) 418
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 2 cut(s) 33, 418
Hpy188I TCNGA 5 cut(s) 61, 163, 217, 542, 741
Hpy188III TCNNGA 4 cut(s) 119, 191, 346, 614
Hpy8I GTNNAC 2 cut(s) 33, 418
Hpy99I CGWCG 8 cut(s) 55, 74, 120, 167, 258, 261, 403, 413
HpyAV CCTTC 3 cut(s) 80, 94, 465
HpyCH4III ACNGT 2 cut(s) 399, 557
HpyCH4IV ACGT 4 cut(s) 256, 288, 662, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 765
HpyF3I CTNAG 4 cut(s) 189, 459, 528, 749
HpySE526I ACGT 4 cut(s) 256, 288, 662, 705
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 3 cut(s) 31, 644, 683
HspAI GCGC 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 4 cut(s) 321, 348, 433, 805
LpnPI CCDG 7 cut(s) 176, 359, 385, 440, 599, 803, 848
Lsp1109I GCAGC 2 cut(s) 755, 820
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 338, 378
MaeII ACGT 4 cut(s) 256, 288, 662, 705
MaeIII GTNAC 2 cut(s) 289, 695
MalI GATC 1 cut(s) 26
MbiI CCGCTC 1 cut(s) 748
MboI GATC 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 275, 352
MlyI GAGTC 2 cut(s) 131, 152
MmeI TCCRAC 4 cut(s) 186, 231, 240, 825
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 417, 755, 867
MslI CAYNNNNRTG 4 cut(s) 117, 555, 684, 704
MspCI CTTAAG 1 cut(s) 754
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 392, 765
NdeII GATC 1 cut(s) 24
NlaIII CATG 3 cut(s) 31, 644, 683
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 2 cut(s) 555, 704
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 4 cut(s) 537, 593, 635, 736
PkrI GCNGC 3 cut(s) 770, 810, 874
PleI GAGTC 2 cut(s) 130, 152
PpsI GAGTC 2 cut(s) 130, 152
Psp124BI GAGCTC 1 cut(s) 345
PstNI CAGNNNCTG 1 cut(s) 817
RsaI GTAC 2 cut(s) 488, 833
RsaNI GTAC 2 cut(s) 487, 832
RseI CAYNNNNRTG 4 cut(s) 117, 555, 684, 704
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 417, 755, 867
SatI GCNGC 3 cut(s) 769, 809, 873
Sau3AI GATC 1 cut(s) 24
SchI GAGTC 2 cut(s) 131, 152
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 364
SmiMI CAYNNNNRTG 4 cut(s) 117, 555, 684, 704
SmlI CTYRAG 1 cut(s) 754
SmoI CTYRAG 1 cut(s) 754
Sse9I AATT 2 cut(s) 275, 352
SsiI CCGC 5 cut(s) 242, 590, 746, 788, 873
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 338, 378
SstI GAGCTC 1 cut(s) 345
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 399, 557
TaiI ACGT 4 cut(s) 259, 291, 665, 708
TaqI TCGA 7 cut(s) 69, 234, 360, 535, 567, 669, 836
TasI AATT 2 cut(s) 275, 352
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 4 cut(s) 537, 593, 635, 736
Tru1I TTAA 3 cut(s) 417, 755, 867
Tru9I TTAA 3 cut(s) 417, 755, 867
TscAI CASTG 2 cut(s) 562, 706
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 768, 808
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 4 cut(s) 168, 252, 527, 749
TspRI CASTG 2 cut(s) 562, 706
Vha464I CTTAAG 1 cut(s) 754
XapI RAATTY 2 cut(s) 275, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmaJI CCTAGG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 2 cut(s) 338, 378
ZraI GACGTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.