Rmu_co8278389.1_g000001

Mediator-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8278389.1
OG0014757
Physical Location & Seq
Forward (+)
336 .. 843
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8278389.1_g000001.1.cds

Sequence Viewer

Length: 508 bp
atgccgtggccattgctaaaatggatcatgtatacttcttcgtcgtcttcgtcttcctctgaagatttcagtgacgccgaagatgaagggacaagtaagaagggcaatgatcatggtcgtgatcccaacaaacaaggagaacaaaatcacgatgacgactccaatgaagatgacttttcctacaaaccccaggaagacgagacctccaactcctccgactatactttcacaatcaacgaaccgcgcagaaaaagacgtcgcattgacaacaaggaagactcaacaattgtgagttttaaacgccgtaagaggatttggagcaaggaggacgagctagagctcttgaagaatttccttgactacagaaccagaccgaggacggctaacgaaaccacgtcgttttacgacgaggttaaccccaagttcaaggaccaattcagcaagcgaaagctggccgagaagattgcaaggttgaagaagaagcaccgcaacgtagtaaacaaaatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

169

Amino Acids

20.1

Weight (kDa)

8.63

Isoelectric Point (pI)

59.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 242, 487
AclWI GGATC 2 cut(s) 32, 116
AcoI YGGCCR 2 cut(s) 8, 453
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 2 cut(s) 75, 256
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 3 cut(s) 346, 427, 475
AjiI CACGTC 1 cut(s) 396
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 334, 340, 451
AluI AGCT 3 cut(s) 334, 340, 451
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 2 cut(s) 32, 116
AoxI GGCC 2 cut(s) 8, 453
ApoI RAATTY 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 430
AvaII GGWCC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 4 cut(s) 39, 45, 201, 282
Bbv12I GWGCWC 1 cut(s) 342
BceAI ACGGC 2 cut(s) 288, 396
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 1 cut(s) 191
BpiI GAAGAC 4 cut(s) 39, 45, 201, 282
BsaHI GRCGYC 2 cut(s) 75, 256
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 5, 189, 374
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 11, 112
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 5, 189, 374
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 11, 112
BseRI GAGGAG 1 cut(s) 202
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 10, 455
BsiHKAI GWGCWC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 2 cut(s) 10, 455
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 24, 109, 121
BspACI CCGC 2 cut(s) 242, 487
BspANI GGCC 2 cut(s) 10, 455
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 2 cut(s) 32, 116
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 11, 112
BssECI CCNNGG 3 cut(s) 5, 189, 374
BssMI GATC 3 cut(s) 24, 109, 121
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 2 cut(s) 75, 256
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 191
BstACI GRCGYC 2 cut(s) 75, 256
BstC8I GCNNGC 2 cut(s) 443, 453
BstDSI CCRYGG 1 cut(s) 5
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 27, 112, 124
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 24, 109, 121
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 361
BstUI CGCG 1 cut(s) 244
BstV2I GAAGAC 4 cut(s) 39, 45, 201, 282
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 10, 455
BtgI CCRYGG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 443, 453
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 1 cut(s) 83
CviAII CATG 2 cut(s) 28, 113
CviJI RGCY 6 cut(s) 10, 334, 340, 383, 451, 455
CviKI_1 RGCY 6 cut(s) 10, 334, 340, 383, 451, 455
DpnI GATC 3 cut(s) 26, 111, 123
DpnII GATC 3 cut(s) 24, 109, 121
DraI TTTAAA 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 8, 453
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 2 cut(s) 31, 116
FaiI YATR 4 cut(s) 29, 33, 114, 222
FaqI GGGAC 1 cut(s) 103
FatI CATG 2 cut(s) 27, 112
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 245
HaeIII GGCC 2 cut(s) 10, 455
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 2 cut(s) 75, 256
Hin1II CATG 2 cut(s) 31, 116
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 158, 278
HpaI GTTAAC 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 33, 415, 499
Hpy188I TCNGA 2 cut(s) 61, 217
Hpy188III TCNNGA 3 cut(s) 119, 149, 343
Hpy8I GTNNAC 3 cut(s) 33, 415, 499
Hpy99I CGWCG 4 cut(s) 46, 261, 400, 410
HpyAV CCTTC 2 cut(s) 80, 94
HpyCH4IV ACGT 3 cut(s) 256, 395, 492
HpyCH4V TGCA 1 cut(s) 467
HpySE526I ACGT 3 cut(s) 256, 395, 492
Hsp92I GRCGYC 2 cut(s) 75, 256
Hsp92II CATG 2 cut(s) 31, 116
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 3 cut(s) 24, 109, 121
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 176, 203, 382, 437
MaeI CTAG 1 cut(s) 335
MaeII ACGT 3 cut(s) 256, 395, 492
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 26, 111, 123
MboI GATC 3 cut(s) 24, 109, 121
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 3 cut(s) 285, 349, 434
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 2 cut(s) 152, 272
MmeI TCCRAC 2 cut(s) 231, 240
MnlI CCTC 7 cut(s) 67, 214, 223, 303, 319, 369, 403
Mox20I TGGCCA 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 10
MseI TTAA 2 cut(s) 297, 414
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 191
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 244
NdeII GATC 3 cut(s) 24, 109, 121
NlaIII CATG 2 cut(s) 31, 116
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 350
PleI GAGTC 2 cut(s) 152, 272
PpsI GAGTC 2 cut(s) 152, 272
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 117
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 2 cut(s) 297, 414
Sau3AI GATC 3 cut(s) 24, 109, 121
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 2 cut(s) 152, 272
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 342
SetI ASST 9 cut(s) 206, 259, 336, 342, 398, 414, 453, 473, 495
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 3 cut(s) 285, 349, 434
SsiI CCGC 2 cut(s) 242, 487
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 3 cut(s) 259, 398, 495
TaqII GACCGA 1 cut(s) 388
TasI AATT 3 cut(s) 285, 349, 434
Tru1I TTAA 2 cut(s) 297, 414
Tru9I TTAA 2 cut(s) 297, 414
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 99, 180
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 335
ZraI GACGTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.