Rmu_sc0038250.1_g000001

Mediator-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038250.1
OG0014757
Physical Location & Seq
Reverse (-)
1029 .. 1931
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038250.1_g000001.1.cds

Sequence Viewer

Length: 903 bp
atgccgtggccattgctaaaatggatcatgtatacttcttcgtcgtcttcgtcttcctctgaagatttcagtgacgccgaagatgaagggacaagtaagaagggcaatgatcatcgtcgtgatcccaacaaacaaggagaacaaaatcacgatgacgactccaatgaagatgacttttcctacaaaccccaggaagacgagacctccaactcctccgactatactttcacaatcaacgaaccgcgcagaaaaagacgtcgcattgacaacaaggaagactcaacaattgtgagttttaaacgccgtaagaggatttggagcaaggaggacgagctagagctcttgaagaatttccttgactacagaaccagaccgaggacggctaacgaaaccacgtcgttttacgaccaggttaaccccaagttcaaggaccaattcagcaagcgaaagctggccgagaagattgcaaggttgaagaagaagcaccgcaacgtagtaaacaaaatggtgaacaataatgggcaagagtttcgcttcagaaacccacacgacagagccattttcgatatttcacataggatttgggcagaatcccctctttacaatattcaggagaagaacgttgtggtggattcacatgatgtggggagtagcaaagcgtcgttcgatgagaagcataacaatggggatgatgagggtaacactgacgtgcgagaaatgataatcgggttggcgatgaatccgataccgttgagtttaagtaactatggaggccgtggaggagaagtggtggatgagaagtggaaggagcagcagatactggagttggaggcgtactcgaagaggttggagttggttcaacatcaggttaaggcagctttggatgacttgcgttccaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

300

Amino Acids

35.11

Weight (kDa)

6.29

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 244
AciI CCGC 2 cut(s) 242, 487
AclI AACGTT 1 cut(s) 621
AclWI GGATC 2 cut(s) 32, 116
AcoI YGGCCR 2 cut(s) 8, 453
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 2 cut(s) 81, 520
AcyI GRCGYC 2 cut(s) 75, 256
AfaI GTAC 1 cut(s) 836
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 4 cut(s) 346, 427, 475, 860
AjiI CACGTC 2 cut(s) 396, 709
AjnI CCWGG 2 cut(s) 189, 408
AleI CACNNNNGTG 1 cut(s) 707
AluBI AGCT 4 cut(s) 334, 340, 451, 878
AluI AGCT 4 cut(s) 334, 340, 451, 878
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 2 cut(s) 32, 116
AlwNI CAGNNNCTG 1 cut(s) 820
AoxI GGCC 3 cut(s) 8, 453, 772
ApeKI GCWGC 2 cut(s) 811, 875
ApoI RAATTY 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 430
BaeI ACNNNNGTAYC 2 cut(s) 809, 842
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 4 cut(s) 39, 45, 201, 282
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 823, 887
BceAI ACGGC 3 cut(s) 288, 396, 759
BcgI CGANNNNNNTGC 4 cut(s) 446, 480, 512, 546
BciT130I CCWGG 2 cut(s) 191, 410
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 2 cut(s) 812, 876
BlsI GCNGC 2 cut(s) 813, 877
Bme1390I CCNGG 2 cut(s) 191, 410
Bme18I GGWCC 1 cut(s) 430
BmgBI CACGTC 2 cut(s) 396, 709
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 191, 410
BpiI GAAGAC 4 cut(s) 39, 45, 201, 282
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 842
BsaHI GRCGYC 2 cut(s) 75, 256
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 5, 189, 374, 775
BsaXI ACNNNNNCTCC 6 cut(s) 188, 218, 771, 774, 801, 804
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 11, 112
BseBI CCWGG 2 cut(s) 191, 410
BseDI CCNNGG 4 cut(s) 5, 189, 374, 775
BseGI GGATG 3 cut(s) 694, 799, 889
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 11, 112
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 2 cut(s) 202, 795
BseXI GCAGC 2 cut(s) 823, 887
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 3 cut(s) 10, 455, 774
BsiHKAI GWGCWC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 10, 455, 774
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 24, 109, 121
BspACI CCGC 2 cut(s) 242, 487
BspANI GGCC 3 cut(s) 10, 455, 774
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 2 cut(s) 32, 116
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 11, 112
BsrI ACTGG 1 cut(s) 825
BssECI CCNNGG 4 cut(s) 5, 189, 374, 775
BssMI GATC 3 cut(s) 24, 109, 121
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 2 cut(s) 75, 256
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 191, 410
Bst4CI ACNGT 1 cut(s) 750
Bst6I CTCTTC 1 cut(s) 836
BstACI GRCGYC 2 cut(s) 75, 256
BstC8I GCNNGC 2 cut(s) 443, 453
BstDSI CCRYGG 2 cut(s) 5, 775
BstF5I GGATG 3 cut(s) 694, 799, 889
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 27, 112, 124
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 24, 109, 121
BstNI CCWGG 2 cut(s) 191, 410
BstSCI CCNGG 2 cut(s) 189, 408
BstSFI CTRYAG 1 cut(s) 361
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 823, 887
BstV2I GAAGAC 4 cut(s) 39, 45, 201, 282
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 10, 455, 774
BtgI CCRYGG 2 cut(s) 5, 775
BtgZI GCGATG 1 cut(s) 749
BtrI CACGTC 2 cut(s) 396, 709
BtsCI GGATG 3 cut(s) 694, 799, 889
BtsIMutI CAGTG 2 cut(s) 76, 702
Cac8I GCNNGC 2 cut(s) 443, 453
CaiI CAGNNNCTG 1 cut(s) 820
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 430
CseI GACGC 2 cut(s) 83, 648
CsiI ACCWGGT 1 cut(s) 408
Csp6I GTAC 1 cut(s) 835
CviAII CATG 2 cut(s) 28, 638
CviJI RGCY 9 cut(s) 10, 334, 340, 383, 451, 455, 557, 774, 878
CviKI_1 RGCY 9 cut(s) 10, 334, 340, 383, 451, 455, 557, 774, 878
CviQI GTAC 1 cut(s) 835
DpnI GATC 3 cut(s) 26, 111, 123
DpnII GATC 3 cut(s) 24, 109, 121
DraI TTTAAA 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 8, 453
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 2 cut(s) 81, 520
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 189, 408
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 2 cut(s) 31, 641
FaiI YATR 7 cut(s) 29, 33, 222, 576, 639, 678, 768
FaqI GGGAC 1 cut(s) 103
FatI CATG 2 cut(s) 27, 637
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 812, 876
FokI GGATG 3 cut(s) 701, 806, 896
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 812, 876
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 812, 876
GsuI CTGGAG 1 cut(s) 842
HaeIII GGCC 3 cut(s) 10, 455, 774
HgaI GACGC 2 cut(s) 83, 648
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 2 cut(s) 75, 256
Hin1II CATG 2 cut(s) 31, 641
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 5 cut(s) 158, 278, 590, 632, 739
HpaI GTTAAC 1 cut(s) 415
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 4 cut(s) 33, 415, 499, 511
Hpy188I TCNGA 4 cut(s) 61, 217, 539, 744
Hpy188III TCNNGA 4 cut(s) 119, 149, 343, 611
Hpy8I GTNNAC 4 cut(s) 33, 415, 499, 511
Hpy99I CGWCG 5 cut(s) 46, 120, 261, 400, 664
HpyAV CCTTC 3 cut(s) 80, 94, 799
HpyCH4III ACNGT 1 cut(s) 750
HpyCH4IV ACGT 5 cut(s) 256, 395, 492, 621, 708
HpyCH4V TGCA 1 cut(s) 467
HpySE526I ACGT 5 cut(s) 256, 395, 492, 621, 708
Hsp92I GRCGYC 2 cut(s) 75, 256
Hsp92II CATG 2 cut(s) 31, 641
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 415
Kzo9I GATC 3 cut(s) 24, 109, 121
LmnI GCTCC 2 cut(s) 318, 808
LpnPI CCDG 9 cut(s) 176, 203, 382, 395, 422, 437, 596, 806, 851
Lsp1109I GCAGC 2 cut(s) 823, 887
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 1 cut(s) 335
MaeII ACGT 5 cut(s) 256, 395, 492, 621, 708
MaeIII GTNAC 3 cut(s) 71, 698, 761
MalI GATC 3 cut(s) 26, 111, 123
MboI GATC 3 cut(s) 24, 109, 121
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 3 cut(s) 285, 349, 434
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 2 cut(s) 152, 272
MmeI TCCRAC 4 cut(s) 231, 240, 807, 828
Mox20I TGGCCA 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 10
MseI TTAA 4 cut(s) 297, 414, 758, 870
MslI CAYNNNNRTG 3 cut(s) 117, 681, 707
Msp20I TGGCCA 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 191, 410
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 191, 410
MvnI CGCG 1 cut(s) 244
NdeII GATC 3 cut(s) 24, 109, 121
NlaIII CATG 2 cut(s) 31, 641
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 3 cut(s) 590, 632, 739
PkrI GCNGC 2 cut(s) 813, 877
PleI GAGTC 2 cut(s) 152, 272
PpsI GAGTC 2 cut(s) 152, 272
Psp124BI GAGCTC 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 621
Psp6I CCWGG 2 cut(s) 189, 408
PspGI CCWGG 2 cut(s) 189, 408
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 820
RsaI GTAC 1 cut(s) 836
RsaNI GTAC 1 cut(s) 835
RseI CAYNNNNRTG 3 cut(s) 117, 681, 707
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 4 cut(s) 297, 414, 758, 870
SatI GCNGC 2 cut(s) 812, 876
Sau3AI GATC 3 cut(s) 24, 109, 121
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 2 cut(s) 152, 272
ScrFI CCNGG 2 cut(s) 191, 410
SduI GDGCHC 1 cut(s) 342
SexAI ACCWGGT 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 117, 681, 707
Sse9I AATT 3 cut(s) 285, 349, 434
SsiI CCGC 2 cut(s) 242, 487
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 189, 408
TaaI ACNGT 1 cut(s) 750
TaiI ACGT 5 cut(s) 259, 398, 495, 624, 711
TaqI TCGA 3 cut(s) 564, 666, 839
TaqII GACCGA 1 cut(s) 388
TasI AATT 3 cut(s) 285, 349, 434
TfiI GAWTC 3 cut(s) 590, 632, 739
Tru1I TTAA 4 cut(s) 297, 414, 758, 870
Tru9I TTAA 4 cut(s) 297, 414, 758, 870
TscAI CASTG 2 cut(s) 76, 709
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 811, 875
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 99, 180, 752
TspRI CASTG 2 cut(s) 76, 709
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 1 cut(s) 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 1 cut(s) 335
ZraI GACGTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.