FvH4_6g05341

branched-chain-amino-acid aminotransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011727
Physical Location & Seq
Forward (+)
3006036 .. 3009232
3197 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05341.t4

Sequence Viewer

Length: 1200 bp
ATGGCGGACCGGGAGCTCCATCTGCTCTCGGCTCTCTTGGCTATGGAGCCCACCGACTCGCTGATCGGCCTGGCCAGGGAATGCGGTGGAGGTTCGGTTACTGAGAAAGTCCAGAGGTTTGTTTGGGACCATTGCATCACCAAATATGCTGGGAAACTACATGCACCTTACCTGAGAAAGTTTTTGAAGAAGCTGATTGCTGAAGTTGAGTTGGACCATGGCGATGTGATTGATGAGTTGTACGAACAATATGCGCATTACATGGCTACTTTGAAGGAGAAGGACTTGGAAAAGGAAAATGCAAGGGTTTTCAAGTACATTTCGTTTCTTTTTCCTAATGGTTTTCTTGAACTTTCAAGTTGTTTGGAATCAAGGAAACTGATGGTACAGCTACAATGTTCTCTCAACATGCTTGAAGGAGATACTGGGTGTTCAGTTTGGCCATCAAGTCTTCTTTTGTCCGAGTGCATACTTTCATTTCCAGAAGTGTTCTCTAATAACTCGTGCTTTGAGGTTGGTTCAGGTGTTGGTTTGGTTGGCATCTGTCTTGCTCATGTGAAAGCATCCAAGGTCATACTAAGTGATGGTGACCTGTCAACTTTAGCAAACATGAAGCGTAATCTGGATTTGAACCACTTGACCGTTGAAACTGATATGTCAGAAACTACTGAAGATCCAAATATGGTAAAATGCATTCATCTGCCATGGGAATCTGTGTCAGAAAAGGAGGTTCAAAACCACAAACCAGATATAATTTTGGGTGCAGATGTAATATACGATCCAGTATGCCTCCCACATCTTGTTCGAGTGCTCACCCTTCTTCTAAATCAGGCAAACCCATATCCTGACCAGTGCAATGGTAATCATACGGGCTCTACATTGGGAAGTAAATATATTGGTGATGCTAAAGTGAATGGAACTCATCAAGCAAATGCTAGCAATGCCGATGAATCTGATGCTTCTGTATGCAAAAGCACAGACAATGACACTGCAAATGTTGGAATGAAGAAGCGTCCTATGGCTTTAATCGCCTCTGTCATTCGCAATGTCGACACATTCAATAAGTTCCTAGCGTTGTTAAACGAGGCCAACCTTACCATCAATGACCTAACTGTAACTGTTAGGCCTCGGAATTTTCTTCCTTACATGAAATCATATGATCGCAGCACTGTACGACTCTTTTGCATCTCATGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4 Methyltransf_16

Protein Analysis

400

Amino Acids

44.31

Weight (kDa)

5.58

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 89 - 230 8.8e-19 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27400
fragaria_vesca FvH4_6g05341 FvH4_6g05341 FvH4_6g05341 FvH4_6g05341 FvH4_6g05341
malus_domestica MD04G1209100.v1.1
prunus_persica Prupe.6G330100_v2.0.a1 Prupe.6G330100_v2.0.a1
pyrus_communis pycom04g18530
rosa_chinensis RchiOBHm_Chr3g0454111
rosa_laevigata RLG00000025482
rosa_multiflora Rmu_co8427317.1_g000001
rosa_roxburghii Rroxscaffold_6G00430900
rosa_rugosa Rorug02G0653200 Rorug02G0653300
rosa_samantha Rh3AG056000 Rh3BG057400 Rh3CG056700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 255
AccI GTMKAC 1 cut(s) 1050
AciI CCGC 2 cut(s) 5, 84
AclWI GGATC 2 cut(s) 668, 773
AcoI YGGCCR 2 cut(s) 72, 440
AcsI RAATTY 1 cut(s) 1132
AcuI CTGAAG 2 cut(s) 222, 690
AfaI GTAC 4 cut(s) 242, 317, 387, 1173
AfiI CCNNNNNNNGG 1 cut(s) 76
AjnI CCWGG 2 cut(s) 69, 74
AluBI AGCT 3 cut(s) 16, 193, 391
AluI AGCT 3 cut(s) 16, 193, 391
Alw21I GWGCWC 2 cut(s) 18, 813
AlwI GGATC 2 cut(s) 668, 773
AoxI GGCC 5 cut(s) 67, 72, 440, 1086, 1124
ApeKI GCWGC 1 cut(s) 1164
ApoI RAATTY 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 7, 127, 214
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 4 cut(s) 130, 599, 805, 911
AsuNHI GCTAGC 1 cut(s) 935
AvaII GGWCC 3 cut(s) 7, 127, 214
BalI TGGCCA 2 cut(s) 74, 442
BanII GRGCYC 3 cut(s) 18, 51, 875
BauI CACGAG 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 2 cut(s) 18, 813
BbvI GCAGC 1 cut(s) 1176
BccI CCATC 5 cut(s) 27, 376, 451, 578, 1106
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 1164, 1198
BciT130I CCWGG 2 cut(s) 71, 76
BcnI CCSGG 1 cut(s) 11
BfaI CTAG 2 cut(s) 936, 1070
BisI GCNGC 1 cut(s) 1165
BlsI GCNGC 1 cut(s) 1166
Bme1390I CCNGG 3 cut(s) 11, 71, 76
Bme18I GGWCC 3 cut(s) 7, 127, 214
BmgT120I GGNCC 3 cut(s) 7, 127, 214
BmiI GGNNCC 2 cut(s) 48, 128
BmrFI CCNGG 3 cut(s) 11, 71, 76
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 6 cut(s) 144, 549, 572, 892, 946, 1194
BmtI GCTAGC 1 cut(s) 939
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 75, 217, 567, 704, 1127
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 3 cut(s) 430, 782, 850
Bse3DI GCAATG 4 cut(s) 130, 862, 946, 1051
BseBI CCWGG 2 cut(s) 71, 76
BseDI CCNNGG 5 cut(s) 75, 217, 567, 704, 1127
BseGI GGATG 1 cut(s) 563
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 4 cut(s) 130, 862, 946, 1051
BseMII CTCAG 2 cut(s) 93, 164
BseNI ACTGG 3 cut(s) 430, 782, 850
BseXI GCAGC 1 cut(s) 1176
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 783
BshFI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BsiHKAI GWGCWC 2 cut(s) 18, 813
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 2 cut(s) 86, 693
BsnI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
Bsp1286I GDGCHC 4 cut(s) 18, 51, 813, 875
Bsp143I GATC 4 cut(s) 63, 673, 778, 1159
Bsp19I CCATGG 2 cut(s) 217, 704
BspACI CCGC 2 cut(s) 5, 84
BspANI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BspCNI CTCAG 2 cut(s) 94, 165
BspLI GGNNCC 2 cut(s) 48, 128
BspOI GCTAGC 1 cut(s) 939
BspPI GGATC 2 cut(s) 668, 773
BsrDI GCAATG 4 cut(s) 130, 862, 946, 1051
BsrI ACTGG 3 cut(s) 430, 782, 850
BssECI CCNNGG 5 cut(s) 75, 217, 567, 704, 1127
BssMI GATC 4 cut(s) 63, 673, 778, 1159
BssSI CACGAG 1 cut(s) 502
BssT1I CCWWGG 3 cut(s) 217, 567, 704
Bst2BI CACGAG 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 71, 76
Bst4CI ACNGT 4 cut(s) 643, 1114, 1120, 1171
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 3 cut(s) 102, 173, 578
BstDSI CCRYGG 2 cut(s) 217, 704
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 66, 676, 781, 1162
BstMBI GATC 4 cut(s) 63, 673, 778, 1159
BstMWI GCNNNNNNNGC 4 cut(s) 22, 38, 941, 1028
BstNI CCWGG 2 cut(s) 71, 76
BstNSI RCATGY 2 cut(s) 164, 412
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 3 cut(s) 9, 69, 74
BstV1I GCAGC 1 cut(s) 1176
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 857
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BtgI CCRYGG 2 cut(s) 217, 704
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 563
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 3 cut(s) 857, 987, 1167
Cac8I GCNNGC 1 cut(s) 937
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 7, 127, 214
CpoI CGGWCCG 1 cut(s) 7
CseI GACGC 1 cut(s) 1001
Csp6I GTAC 4 cut(s) 241, 316, 386, 1172
CspI CGGWCCG 1 cut(s) 7
CviAII CATG 9 cut(s) 161, 218, 262, 409, 554, 610, 705, 1147, 1191
CviQI GTAC 4 cut(s) 241, 316, 386, 1172
DdeI CTNAG 3 cut(s) 102, 173, 578
DpnI GATC 4 cut(s) 65, 675, 780, 1161
DpnII GATC 4 cut(s) 63, 673, 778, 1159
EaeI YGGCCR 2 cut(s) 72, 440
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 217, 567, 704
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 3 cut(s) 18, 51, 875
Eco47I GGWCC 3 cut(s) 7, 127, 214
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 222, 690
Eco91I GGTNACC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 69, 74
EcoT14I CCWWGG 3 cut(s) 217, 567, 704
EcoT22I ATGCAT 1 cut(s) 695
EcoT38I GRGCYC 3 cut(s) 18, 51, 875
ErhI CCWWGG 3 cut(s) 217, 567, 704
FaeI CATG 9 cut(s) 164, 221, 265, 412, 557, 613, 708, 1150, 1194
FaqI GGGAC 1 cut(s) 140
FatI CATG 9 cut(s) 160, 217, 261, 408, 553, 609, 704, 1146, 1190
FauNDI CATATG 1 cut(s) 1156
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 1 cut(s) 1165
FokI GGATG 1 cut(s) 550
FriOI GRGCYC 3 cut(s) 18, 51, 875
Fsp4HI GCNGC 1 cut(s) 1165
FspAI RTGCGCAY 1 cut(s) 255
FspBI CTAG 2 cut(s) 936, 1070
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 1165
GsaI CCCAGC 1 cut(s) 153
HaeIII GGCC 5 cut(s) 69, 74, 442, 1088, 1126
HapII CCGG 1 cut(s) 10
HgaI GACGC 1 cut(s) 1001
HhaI GCGC 1 cut(s) 256
Hin1II CATG 9 cut(s) 164, 221, 265, 412, 557, 613, 708, 1150, 1194
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 2 cut(s) 597, 1051
HindII GTYRAC 2 cut(s) 597, 1051
HinfI GANTC 5 cut(s) 56, 368, 710, 950, 1176
HpaII CCGG 1 cut(s) 10
HphI GGTGA 4 cut(s) 130, 599, 805, 911
Hpy166II GTNNAC 2 cut(s) 597, 1051
Hpy188I TCNGA 5 cut(s) 463, 661, 721, 955, 1131
Hpy188III TCNNGA 5 cut(s) 112, 347, 482, 623, 845
Hpy8I GTNNAC 2 cut(s) 597, 1051
HpyAV CCTTC 4 cut(s) 268, 274, 410, 827
HpyCH4III ACNGT 4 cut(s) 643, 1114, 1120, 1171
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 38, 941, 1028
HpyF3I CTNAG 3 cut(s) 102, 173, 578
Hsp92II CATG 9 cut(s) 164, 221, 265, 412, 557, 613, 708, 1150, 1194
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 4 cut(s) 63, 673, 778, 1159
LmnI GCTCC 3 cut(s) 13, 21, 46
Lsp1109I GCAGC 1 cut(s) 1176
LweI GCATC 6 cut(s) 144, 549, 572, 892, 946, 1194
MaeI CTAG 2 cut(s) 936, 1070
MaeIII GTNAC 3 cut(s) 97, 587, 1114
MalI GATC 4 cut(s) 65, 675, 780, 1161
MboI GATC 4 cut(s) 63, 673, 778, 1159
MboII GAAGA 6 cut(s) 199, 443, 683, 812, 1018, 1130
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 4 cut(s) 18, 51, 813, 875
MlsI TGGCCA 2 cut(s) 74, 442
MluCI AATT 2 cut(s) 753, 1132
MluNI TGGCCA 2 cut(s) 74, 442
MlyI GAGTC 2 cut(s) 50, 1170
MmeI TCCRAC 2 cut(s) 192, 979
MnlI CCTC 8 cut(s) 83, 108, 505, 721, 800, 1042, 1078, 1137
Mox20I TGGCCA 2 cut(s) 74, 442
Mph1103I ATGCAT 1 cut(s) 695
MscI TGGCCA 2 cut(s) 74, 442
MseI TTAA 2 cut(s) 1025, 1079
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 2 cut(s) 74, 442
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 3 cut(s) 11, 71, 76
Mva1269I GAATGC 2 cut(s) 86, 693
MvaI CCWGG 2 cut(s) 71, 76
MwoI GCNNNNNNNGC 4 cut(s) 22, 38, 941, 1028
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 2 cut(s) 217, 704
NdeI CATATG 1 cut(s) 1156
NdeII GATC 4 cut(s) 63, 673, 778, 1159
NheI GCTAGC 1 cut(s) 935
NlaIII CATG 9 cut(s) 164, 221, 265, 412, 557, 613, 708, 1150, 1194
NlaIV GGNNCC 2 cut(s) 48, 128
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 587
NsbI TGCGCA 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 2 cut(s) 164, 412
PceI AGGCCT 1 cut(s) 1126
PctI GAATGC 2 cut(s) 86, 693
PfeI GAWTC 3 cut(s) 368, 710, 950
PkrI GCNGC 1 cut(s) 1166
PleI GAGTC 2 cut(s) 50, 1170
PpsI GAGTC 2 cut(s) 50, 1170
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 69, 74
PspEI GGTNACC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 69, 74
PspN4I GGNNCC 2 cut(s) 48, 128
PspPI GGNCC 3 cut(s) 7, 127, 214
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 4 cut(s) 242, 317, 387, 1173
RsaNI GTAC 4 cut(s) 241, 316, 386, 1172
RseI CAYNNNNRTG 1 cut(s) 222
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 1049
SaqAI TTAA 2 cut(s) 1025, 1079
SatI GCNGC 1 cut(s) 1165
Sau3AI GATC 4 cut(s) 63, 673, 778, 1159
Sau96I GGNCC 3 cut(s) 7, 127, 214
SchI GAGTC 2 cut(s) 50, 1170
ScrFI CCNGG 3 cut(s) 11, 71, 76
SduI GDGCHC 4 cut(s) 18, 51, 813, 875
SfaNI GCATC 6 cut(s) 144, 549, 572, 892, 946, 1194
SinI GGWCC 3 cut(s) 7, 127, 214
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 2 cut(s) 753, 1132
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 2 cut(s) 5, 84
SspMI CTAG 2 cut(s) 936, 1070
SstI GAGCTC 1 cut(s) 18
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 3 cut(s) 9, 69, 74
StyI CCWWGG 3 cut(s) 217, 567, 704
TaaI ACNGT 4 cut(s) 643, 1114, 1120, 1171
TaqI TCGA 2 cut(s) 805, 1050
TasI AATT 2 cut(s) 753, 1132
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 368, 710, 950
Tru1I TTAA 2 cut(s) 1025, 1079
Tru9I TTAA 2 cut(s) 1025, 1079
TscAI CASTG 3 cut(s) 857, 994, 1174
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 1 cut(s) 1164
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 6 cut(s) 465, 626, 686, 963, 1019, 1163
TspRI CASTG 3 cut(s) 857, 994, 1174
VpaK11BI GGWCC 3 cut(s) 7, 127, 214
XapI RAATTY 1 cut(s) 1132
XceI RCATGY 2 cut(s) 164, 412
XmiI GTMKAC 1 cut(s) 1050
XspI CTAG 2 cut(s) 936, 1070
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.