Rh3AG056000

branched-chain-amino-acid aminotransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011727
Physical Location & Seq
Forward (+)
3919047 .. 3921884
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG056000.1

Sequence Viewer

Length: 1200 bp
ATGGCGGACCAGGAGCTCCATCTGCTCTCAGCTTTCCTGGCTATGGAGCCCACAGACTCTCTGATCGGCCTGGCCAGGGAATGCGGTGGAGGGTCGGTCACTGAGAGAGTTCAGAGGTTTATTTGGGAGCATTGCATAACCAAATATGCGGGGAAACTACATGCGCCTTATCTGAGGAAGTTTCTGAAGAAGCTTATTGCTGAAGTTGAGTTGAACCACGGTGATGTGATTGATGAGTTATACGAACATTATGCACATTACATGACTACTTTGAAGGAGAAAGATTTGGAGAAAGATAATGCAAGGGTCTTCAAGTACATTTCATTTCTTTTTCCTGATGGTTGTCTTGAACTTTCAAGATGTTTGGAATCAAGGAAACTGATGGTGCAGCTGCAATGTTCTCTCAACATGCTTGAAGGAGATACTGGGTGTTCAGTCTGGCCATCAAGTCTTCTTTTGTCAGAGTGCATACTTTCATTTCCAGAATTGTTCTCTAATAAGTCGTGCTTTGAGGTTGGTTCAGGTGTTGGTTTGGTTGGCATCTGTCTTGCCCATGTGAAAGCATCCAAGGTCATACTAAGTGATGGTGACCTGTCAACTCTAGCAAACATGAAGCTTAATCTGGAACTGAACCACTTGAGCGTTGAAACTGATATGTCAGAAACTACTGCAGATCCAAATATGGTAAAATGCATTCATTTGCCATGGGAATCTGTGTCAGAGAAGGAGCTTCAAAACCACAAGCCAGATATAATTTTGGGTGCAGATGTAATATATGATCCCGTATGCCTCCCACATCTTGTTCGGGTACTTACCCTTCTTCTAAACCAGGAAAAACCATATCCTGACCAGTGCAGTAATAATCATCCCGTCTTTTCCTTGGGAAGTAAATGTAGTAGTGATGCTAAAGTCAATGTAACTCATCAAGCAAATGCTAGCAATGGTGATGAATCCGTTGCTTCTCTATGCAAAAGAACAGACAATGGTGCATCACATGTTGGATTGAAGAAACGTCCGACAGCTTTAATTGCTTCTGTCATTCGCAATGTCGACACATTCAATAAGTTTCTCACTTTGCTAGACGAGGCCAACCTTACGATCGAAGACCTAACTGAATCGCATAGGCCTCTAAATTTTCTTCCTTACATGAAGTCATATGATCGCAGCACCGTACGAATGTTTTCCATCTCATGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_4 Methyltransf_16

Protein Analysis

399

Amino Acids

44.55

Weight (kDa)

5.76

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 136 - 278 5.4e-19 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011727)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27400
fragaria_vesca FvH4_6g05341 FvH4_6g05341 FvH4_6g05341 FvH4_6g05341 FvH4_6g05341
malus_domestica MD04G1209100.v1.1
prunus_persica Prupe.6G330100_v2.0.a1 Prupe.6G330100_v2.0.a1
pyrus_communis pycom04g18530
rosa_chinensis RchiOBHm_Chr3g0454111
rosa_laevigata RLG00000025482
rosa_multiflora Rmu_co8427317.1_g000001
rosa_roxburghii Rroxscaffold_6G00430900
rosa_rugosa Rorug02G0653200 Rorug02G0653300
rosa_samantha Rh3AG056000 Rh3BG057400 Rh3CG056700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1050
AciI CCGC 3 cut(s) 5, 84, 149
AclWI GGATC 2 cut(s) 668, 773
AcoI YGGCCR 2 cut(s) 72, 440
AcsI RAATTY 1 cut(s) 1132
AcuI CTGAAG 2 cut(s) 206, 222
AfaI GTAC 3 cut(s) 317, 810, 1173
AfiI CCNNNNNNNGG 2 cut(s) 43, 76
AflIII ACRYGT 1 cut(s) 994
AjnI CCWGG 5 cut(s) 9, 36, 69, 74, 828
AluBI AGCT 7 cut(s) 16, 32, 193, 391, 616, 730, 1022
AluI AGCT 7 cut(s) 16, 32, 193, 391, 616, 730, 1022
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 2 cut(s) 668, 773
AoxI GGCC 5 cut(s) 67, 72, 440, 1086, 1124
ApeKI GCWGC 3 cut(s) 388, 391, 1164
ApoI RAATTY 1 cut(s) 1132
Asp700I GAANNNNTTC 1 cut(s) 1180
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 3 cut(s) 233, 599, 956
AsuNHI GCTAGC 1 cut(s) 935
AvaII GGWCC 1 cut(s) 7
BalI TGGCCA 2 cut(s) 74, 442
BanII GRGCYC 2 cut(s) 18, 51
BarI GAAGNNNNNNTAC 2 cut(s) 801, 833
BbsI GAAGAC 3 cut(s) 301, 443, 1110
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 378, 400, 1176
BccI CCATC 6 cut(s) 27, 332, 376, 451, 578, 1193
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 5 cut(s) 11, 38, 71, 76, 830
BfaI CTAG 3 cut(s) 602, 936, 1079
BfmI CTRYAG 1 cut(s) 669
BisI GCNGC 3 cut(s) 389, 392, 1165
BlsI GCNGC 3 cut(s) 390, 393, 1166
Bme1390I CCNGG 5 cut(s) 11, 38, 71, 76, 830
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 5 cut(s) 11, 38, 71, 76, 830
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 4 cut(s) 549, 572, 892, 998
BmtI GCTAGC 1 cut(s) 939
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 3 cut(s) 301, 443, 1110
BpuEI CTTGAG 1 cut(s) 658
BsaJI CCNNGG 5 cut(s) 75, 217, 567, 704, 879
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 76
Bse1I ACTGG 2 cut(s) 430, 850
Bse3DI GCAATG 4 cut(s) 130, 401, 946, 1051
BseBI CCWGG 5 cut(s) 11, 38, 71, 76, 830
BseDI CCNNGG 5 cut(s) 75, 217, 567, 704, 879
BseGI GGATG 2 cut(s) 563, 865
BseLI CCNNNNNNNGG 2 cut(s) 43, 76
BseMI GCAATG 4 cut(s) 130, 401, 946, 1051
BseMII CTCAG 3 cut(s) 42, 93, 164
BseNI ACTGG 2 cut(s) 430, 850
BseXI GCAGC 3 cut(s) 378, 400, 1176
BsgI GTGCAG 3 cut(s) 407, 783, 874
Bsh1285I CGRYCG 1 cut(s) 1101
BshFI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BsiEI CGRYCG 1 cut(s) 1101
BsiHKAI GWGCWC 1 cut(s) 18
BsiWI CGTACG 1 cut(s) 1171
BslI CCNNNNNNNGG 2 cut(s) 43, 76
BsmI GAATGC 2 cut(s) 86, 693
BsnI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
Bsp1286I GDGCHC 2 cut(s) 18, 51
Bsp143I GATC 5 cut(s) 63, 673, 778, 1098, 1159
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 3 cut(s) 5, 84, 149
BspANI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BspCNI CTCAG 3 cut(s) 41, 94, 165
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 673
BspOI GCTAGC 1 cut(s) 939
BspPI GGATC 2 cut(s) 668, 773
BsrDI GCAATG 4 cut(s) 130, 401, 946, 1051
BsrI ACTGG 2 cut(s) 430, 850
BssECI CCNNGG 5 cut(s) 75, 217, 567, 704, 879
BssMI GATC 5 cut(s) 63, 673, 778, 1098, 1159
BssT1I CCWWGG 3 cut(s) 567, 704, 879
Bst2UI CCWGG 5 cut(s) 11, 38, 71, 76, 830
Bst4CI ACNGT 2 cut(s) 221, 1171
BstC8I GCNNGC 1 cut(s) 937
BstDEI CTNAG 4 cut(s) 28, 102, 173, 578
BstDSI CCRYGG 2 cut(s) 217, 704
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 2 cut(s) 563, 865
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 5 cut(s) 66, 676, 781, 1101, 1162
BstMBI GATC 5 cut(s) 63, 673, 778, 1098, 1159
BstMCI CGRYCG 1 cut(s) 1101
BstMWI GCNNNNNNNGC 3 cut(s) 22, 38, 1028
BstNI CCWGG 5 cut(s) 11, 38, 71, 76, 830
BstNSI RCATGY 3 cut(s) 164, 412, 998
BstPI GGTNACC 1 cut(s) 587
BstSCI CCNGG 5 cut(s) 9, 36, 69, 74, 828
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 378, 400, 1176
BstV2I GAAGAC 3 cut(s) 301, 443, 1110
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuRI GGCC 5 cut(s) 69, 74, 442, 1088, 1126
BtgI CCRYGG 2 cut(s) 217, 704
BtsCI GGATG 2 cut(s) 563, 865
BtsIMutI CAGTG 2 cut(s) 99, 857
Cac8I GCNNGC 1 cut(s) 937
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 3 cut(s) 316, 809, 1172
CviAII CATG 9 cut(s) 161, 262, 409, 554, 610, 705, 995, 1147, 1191
CviQI GTAC 3 cut(s) 316, 809, 1172
DdeI CTNAG 4 cut(s) 28, 102, 173, 578
DpnI GATC 5 cut(s) 65, 675, 780, 1100, 1161
DpnII GATC 5 cut(s) 63, 673, 778, 1098, 1159
EaeI YGGCCR 2 cut(s) 72, 440
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 567, 704, 879
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 2 cut(s) 18, 51
Eco47I GGWCC 1 cut(s) 7
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 206, 222
Eco91I GGTNACC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 587
EcoRII CCWGG 5 cut(s) 9, 36, 69, 74, 828
EcoT14I CCWWGG 3 cut(s) 567, 704, 879
EcoT22I ATGCAT 1 cut(s) 695
EcoT38I GRGCYC 2 cut(s) 18, 51
ErhI CCWWGG 3 cut(s) 567, 704, 879
FaeI CATG 9 cut(s) 164, 265, 412, 557, 613, 708, 998, 1150, 1194
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 9 cut(s) 160, 261, 408, 553, 609, 704, 994, 1146, 1190
FauI CCCGC 1 cut(s) 142
FauNDI CATATG 1 cut(s) 1156
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 3 cut(s) 389, 392, 1165
FokI GGATG 2 cut(s) 550, 852
FriOI GRGCYC 2 cut(s) 18, 51
Fsp4HI GCNGC 3 cut(s) 389, 392, 1165
FspBI CTAG 3 cut(s) 602, 936, 1079
GlaI GCGC 1 cut(s) 165
GluI GCNGC 3 cut(s) 389, 392, 1165
HaeIII GGCC 5 cut(s) 69, 74, 442, 1088, 1126
HhaI GCGC 1 cut(s) 166
Hin1II CATG 9 cut(s) 164, 265, 412, 557, 613, 708, 998, 1150, 1194
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 2 cut(s) 597, 1051
HindII GTYRAC 2 cut(s) 597, 1051
HindIII AAGCTT 2 cut(s) 191, 614
HinfI GANTC 5 cut(s) 56, 368, 710, 950, 1115
HphI GGTGA 3 cut(s) 233, 599, 956
Hpy166II GTNNAC 2 cut(s) 597, 1051
Hpy188I TCNGA 8 cut(s) 63, 114, 174, 186, 463, 661, 721, 1017
Hpy188III TCNNGA 6 cut(s) 335, 347, 357, 482, 623, 845
Hpy8I GTNNAC 2 cut(s) 597, 1051
HpyAV CCTTC 4 cut(s) 268, 410, 718, 827
HpyCH4III ACNGT 2 cut(s) 221, 1171
HpyCH4IV ACGT 1 cut(s) 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 38, 1028
HpyF3I CTNAG 4 cut(s) 28, 102, 173, 578
HpySE526I ACGT 1 cut(s) 1012
Hsp92II CATG 9 cut(s) 164, 265, 412, 557, 613, 708, 998, 1150, 1194
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 5 cut(s) 63, 673, 778, 1098, 1159
LmnI GCTCC 5 cut(s) 13, 21, 46, 127, 727
Lsp1109I GCAGC 3 cut(s) 378, 400, 1176
LweI GCATC 4 cut(s) 549, 572, 892, 998
MaeI CTAG 3 cut(s) 602, 936, 1079
MaeII ACGT 1 cut(s) 1012
MaeIII GTNAC 3 cut(s) 97, 587, 916
MalI GATC 5 cut(s) 65, 675, 780, 1100, 1161
MboI GATC 5 cut(s) 63, 673, 778, 1098, 1159
MboII GAAGA 7 cut(s) 199, 301, 443, 812, 1018, 1115, 1130
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 2 cut(s) 18, 51
MlsI TGGCCA 2 cut(s) 74, 442
MluCI AATT 4 cut(s) 485, 753, 1026, 1132
MluNI TGGCCA 2 cut(s) 74, 442
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 979, 1040
MnlI CCTC 7 cut(s) 83, 108, 168, 505, 800, 1078, 1137
Mox20I TGGCCA 2 cut(s) 74, 442
Mph1103I ATGCAT 1 cut(s) 695
MroXI GAANNNNTTC 1 cut(s) 1180
MscI TGGCCA 2 cut(s) 74, 442
MseI TTAA 2 cut(s) 618, 1025
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 2 cut(s) 74, 442
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 5 cut(s) 11, 38, 71, 76, 830
Mva1269I GAATGC 2 cut(s) 86, 693
MvaI CCWGG 5 cut(s) 11, 38, 71, 76, 830
MwoI GCNNNNNNNGC 3 cut(s) 22, 38, 1028
NcoI CCATGG 1 cut(s) 704
NdeI CATATG 1 cut(s) 1156
NdeII GATC 5 cut(s) 63, 673, 778, 1098, 1159
NheI GCTAGC 1 cut(s) 935
NlaIII CATG 9 cut(s) 164, 265, 412, 557, 613, 708, 998, 1150, 1194
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 97, 587
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 3 cut(s) 164, 412, 998
PceI AGGCCT 1 cut(s) 1126
PciI ACATGT 1 cut(s) 994
PctI GAATGC 2 cut(s) 86, 693
PdmI GAANNNNTTC 1 cut(s) 1180
PfeI GAWTC 4 cut(s) 368, 710, 950, 1115
Pfl23II CGTACG 1 cut(s) 1171
PkrI GCNGC 3 cut(s) 390, 393, 1166
Ple19I CGATCG 1 cut(s) 1101
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PscI ACATGT 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 5 cut(s) 9, 36, 69, 74, 828
PspEI GGTNACC 1 cut(s) 587
PspGI CCWGG 5 cut(s) 9, 36, 69, 74, 828
PspLI CGTACG 1 cut(s) 1171
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 7
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 673
PvuI CGATCG 1 cut(s) 1101
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 3 cut(s) 317, 810, 1173
RsaNI GTAC 3 cut(s) 316, 809, 1172
RseI CAYNNNNRTG 1 cut(s) 222
SacI GAGCTC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 1049
SaqAI TTAA 2 cut(s) 618, 1025
SatI GCNGC 3 cut(s) 389, 392, 1165
Sau3AI GATC 5 cut(s) 63, 673, 778, 1098, 1159
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 5 cut(s) 11, 38, 71, 76, 830
SduI GDGCHC 2 cut(s) 18, 51
SfaNI GCATC 4 cut(s) 549, 572, 892, 998
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 4 cut(s) 485, 753, 1026, 1132
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 3 cut(s) 5, 84, 149
SspMI CTAG 3 cut(s) 602, 936, 1079
SstI GAGCTC 1 cut(s) 18
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 5 cut(s) 9, 36, 69, 74, 828
StyI CCWWGG 3 cut(s) 567, 704, 879
TaaI ACNGT 2 cut(s) 221, 1171
TaiI ACGT 1 cut(s) 1015
TaqI TCGA 2 cut(s) 1050, 1101
TaqII GACCGA 1 cut(s) 85
TasI AATT 4 cut(s) 485, 753, 1026, 1132
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 4 cut(s) 368, 710, 950, 1115
Tru1I TTAA 2 cut(s) 618, 1025
Tru9I TTAA 2 cut(s) 618, 1025
TscAI CASTG 2 cut(s) 106, 857
TseFI GTSAC 2 cut(s) 97, 587
TseI GCWGC 3 cut(s) 388, 391, 1164
Tsp45I GTSAC 2 cut(s) 97, 587
TspDTI ATGAA 6 cut(s) 312, 465, 626, 686, 963, 1163
TspGWI ACGGA 1 cut(s) 943
TspRI CASTG 2 cut(s) 106, 857
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 1132
XceI RCATGY 3 cut(s) 164, 412, 998
XmiI GTMKAC 1 cut(s) 1050
XmnI GAANNNNTTC 1 cut(s) 1180
XspI CTAG 3 cut(s) 602, 936, 1079
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.