Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g05590 FvH4_6g05590 FvH4_6g05590 |
| malus_domestica | MD04G1207200.v1.1 MD17G1055000.v1.1 |
| prunus_persica | Prupe.6G328100_v2.0.a1 |
| pyrus_communis | pycom04g18330 |
| rosa_chinensis | RchiOBHm_Chr3g0454371 |
| rosa_laevigata | RLG00000025449 RLG00000025456 |
| rosa_multiflora | Rmu_sc0036936.1_g000001 |
| rosa_roxburghii | Rroxscaffold_165G00437190 Rroxscaffold_6G00425160 |
| rosa_rugosa | Rorug02G0654500 |
| rosa_samantha | Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700 |
| rosa_wichuraiana | Rw3G004520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1166 |
| AccB1I | GGYRCC | 1 cut(s) | 658 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 633 |
| AccI | GTMKAC | 1 cut(s) | 714 |
| AccIII | TCCGGA | 1 cut(s) | 552 |
| AciI | CCGC | 1 cut(s) | 187 |
| AclWI | GGATC | 5 cut(s) | 354, 367, 850, 901, 1098 |
| AcsI | RAATTY | 2 cut(s) | 366, 1627 |
| AcuI | CTGAAG | 2 cut(s) | 30, 1037 |
| AcyI | GRCGYC | 1 cut(s) | 659 |
| AfaI | GTAC | 4 cut(s) | 738, 966, 1207, 1370 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 633 |
| AflII | CTTAAG | 2 cut(s) | 653, 1280 |
| AflIII | ACRYGT | 1 cut(s) | 1365 |
| AhlI | ACTAGT | 1 cut(s) | 286 |
| AjnI | CCWGG | 2 cut(s) | 352, 584 |
| AlwI | GGATC | 5 cut(s) | 354, 367, 850, 901, 1098 |
| Aor13HI | TCCGGA | 1 cut(s) | 552 |
| AoxI | GGCC | 1 cut(s) | 325 |
| ApeKI | GCWGC | 1 cut(s) | 446 |
| ApoI | RAATTY | 2 cut(s) | 366, 1627 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 798, 1292 |
| AspLEI | GCGC | 1 cut(s) | 661 |
| AsuHPI | GGTGA | 4 cut(s) | 142, 323, 877, 1001 |
| AsuII | TTCGAA | 1 cut(s) | 1559 |
| BamHI | GGATCC | 1 cut(s) | 359 |
| BanI | GGYRCC | 1 cut(s) | 658 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 720, 752 |
| BauI | CACGAG | 1 cut(s) | 1455 |
| BbsI | GAAGAC | 1 cut(s) | 10 |
| BbvI | GCAGC | 1 cut(s) | 433 |
| BccI | CCATC | 1 cut(s) | 1238 |
| BciT130I | CCWGG | 2 cut(s) | 354, 586 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BclI | TGATCA | 1 cut(s) | 210 |
| BcuI | ACTAGT | 1 cut(s) | 286 |
| BfaI | CTAG | 3 cut(s) | 287, 663, 1386 |
| BfmI | CTRYAG | 1 cut(s) | 1351 |
| BfoI | RGCGCY | 1 cut(s) | 662 |
| BfrI | CTTAAG | 2 cut(s) | 653, 1280 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BisI | GCNGC | 1 cut(s) | 447 |
| BlsI | GCNGC | 1 cut(s) | 448 |
| BmcAI | AGTACT | 1 cut(s) | 738 |
| Bme1390I | CCNGG | 2 cut(s) | 354, 586 |
| BmiI | GGNNCC | 3 cut(s) | 361, 660, 1423 |
| BmrFI | CCNGG | 2 cut(s) | 354, 586 |
| BpiI | GAAGAC | 1 cut(s) | 10 |
| Bpu14I | TTCGAA | 1 cut(s) | 1559 |
| BpuEI | CTTGAG | 1 cut(s) | 1358 |
| Bsa29I | ATCGAT | 1 cut(s) | 1480 |
| BsaAI | YACGTR | 1 cut(s) | 934 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1155, 1248 |
| BsaHI | GRCGYC | 1 cut(s) | 659 |
| BsaJI | CCNNGG | 3 cut(s) | 585, 1425, 1581 |
| BsaWI | WCCGGW | 1 cut(s) | 552 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 633 |
| Bse118I | RCCGGY | 1 cut(s) | 323 |
| Bse1I | ACTGG | 3 cut(s) | 863, 1263, 1297 |
| Bse3DI | GCAATG | 2 cut(s) | 627, 1320 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1155, 1248 |
| BseAI | TCCGGA | 1 cut(s) | 552 |
| BseBI | CCWGG | 2 cut(s) | 354, 586 |
| BseCI | ATCGAT | 1 cut(s) | 1480 |
| BseDI | CCNNGG | 3 cut(s) | 585, 1425, 1581 |
| BseGI | GGATG | 5 cut(s) | 828, 1249, 1276, 1629, 1739 |
| BseJI | GATNNNNATC | 2 cut(s) | 1155, 1248 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 633 |
| BseMI | GCAATG | 2 cut(s) | 627, 1320 |
| BseMII | CTCAG | 2 cut(s) | 495, 1046 |
| BseNI | ACTGG | 3 cut(s) | 863, 1263, 1297 |
| BseXI | GCAGC | 1 cut(s) | 433 |
| BsgI | GTGCAG | 2 cut(s) | 432, 753 |
| BshFI | GGCC | 1 cut(s) | 327 |
| BshNI | GGYRCC | 1 cut(s) | 658 |
| BshVI | ATCGAT | 1 cut(s) | 1480 |
| BsiSI | CCGG | 2 cut(s) | 324, 553 |
| BslFI | GGGAC | 1 cut(s) | 1429 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 633 |
| BsmFI | GGGAC | 1 cut(s) | 1429 |
| BsnI | GGCC | 1 cut(s) | 327 |
| Bsp119I | TTCGAA | 1 cut(s) | 1559 |
| Bsp13I | TCCGGA | 1 cut(s) | 552 |
| BspACI | CCGC | 1 cut(s) | 187 |
| BspANI | GGCC | 1 cut(s) | 327 |
| BspCNI | CTCAG | 2 cut(s) | 496, 1047 |
| BspDI | ATCGAT | 1 cut(s) | 1480 |
| BspEI | TCCGGA | 1 cut(s) | 552 |
| BspHI | TCATGA | 3 cut(s) | 261, 667, 1687 |
| BspLI | GGNNCC | 3 cut(s) | 361, 660, 1423 |
| BspPI | GGATC | 5 cut(s) | 354, 367, 850, 901, 1098 |
| BspT104I | TTCGAA | 1 cut(s) | 1559 |
| BspT107I | GGYRCC | 1 cut(s) | 658 |
| BspTI | CTTAAG | 2 cut(s) | 653, 1280 |
| BsrDI | GCAATG | 2 cut(s) | 627, 1320 |
| BsrFI | RCCGGY | 1 cut(s) | 323 |
| BsrI | ACTGG | 3 cut(s) | 863, 1263, 1297 |
| BssAI | RCCGGY | 1 cut(s) | 323 |
| BssECI | CCNNGG | 3 cut(s) | 585, 1425, 1581 |
| BssNI | GRCGYC | 1 cut(s) | 659 |
| BssSI | CACGAG | 1 cut(s) | 1455 |
| BssT1I | CCWWGG | 1 cut(s) | 1425 |
| Bst2BI | CACGAG | 1 cut(s) | 1455 |
| Bst2UI | CCWGG | 2 cut(s) | 354, 586 |
| Bst4CI | ACNGT | 3 cut(s) | 438, 865, 1443 |
| Bst6I | CTCTTC | 1 cut(s) | 972 |
| BstACI | GRCGYC | 1 cut(s) | 659 |
| BstAFI | CTTAAG | 2 cut(s) | 653, 1280 |
| BstBAI | YACGTR | 1 cut(s) | 934 |
| BstBI | TTCGAA | 1 cut(s) | 1559 |
| BstC8I | GCNNGC | 1 cut(s) | 643 |
| BstDEI | CTNAG | 4 cut(s) | 504, 1055, 1114, 1200 |
| BstF5I | GGATG | 5 cut(s) | 828, 1249, 1276, 1629, 1739 |
| BstH2I | RGCGCY | 1 cut(s) | 662 |
| BstHHI | GCGC | 1 cut(s) | 661 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 638 |
| BstNI | CCWGG | 2 cut(s) | 354, 586 |
| BstNSI | RCATGY | 2 cut(s) | 645, 1369 |
| BstSCI | CCNGG | 2 cut(s) | 352, 584 |
| BstSFI | CTRYAG | 1 cut(s) | 1351 |
| BstSNI | TACGTA | 1 cut(s) | 934 |
| BstV1I | GCAGC | 1 cut(s) | 433 |
| BstV2I | GAAGAC | 1 cut(s) | 10 |
| BstX2I | RGATCY | 1 cut(s) | 359 |
| BstYI | RGATCY | 1 cut(s) | 359 |
| Bsu15I | ATCGAT | 1 cut(s) | 1480 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 327 |
| BsuTUI | ATCGAT | 1 cut(s) | 1480 |
| BtsCI | GGATG | 5 cut(s) | 828, 1249, 1276, 1629, 1739 |
| BtsI | GCAGTG | 1 cut(s) | 692 |
| BtsIMutI | CAGTG | 4 cut(s) | 434, 692, 856, 1256 |
| Cac8I | GCNNGC | 1 cut(s) | 643 |
| CciI | TCATGA | 3 cut(s) | 261, 667, 1687 |
| CfoI | GCGC | 1 cut(s) | 661 |
| Cfr10I | RCCGGY | 1 cut(s) | 323 |
| ClaI | ATCGAT | 1 cut(s) | 1480 |
| Csp6I | GTAC | 4 cut(s) | 737, 965, 1206, 1369 |
| CviQI | GTAC | 4 cut(s) | 737, 965, 1206, 1369 |
| DdeI | CTNAG | 4 cut(s) | 504, 1055, 1114, 1200 |
| DinI | GGCGCC | 1 cut(s) | 660 |
| DraI | TTTAAA | 1 cut(s) | 601 |
| Eam1104I | CTCTTC | 1 cut(s) | 972 |
| EarI | CTCTTC | 1 cut(s) | 972 |
| Eco105I | TACGTA | 1 cut(s) | 934 |
| Eco130I | CCWWGG | 1 cut(s) | 1425 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 1037 |
| EcoRI | GAATTC | 1 cut(s) | 1627 |
| EcoRII | CCWGG | 2 cut(s) | 352, 584 |
| EcoT14I | CCWWGG | 1 cut(s) | 1425 |
| EgeI | GGCGCC | 1 cut(s) | 660 |
| EheI | GGCGCC | 1 cut(s) | 660 |
| ErhI | CCWWGG | 1 cut(s) | 1425 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1010, 1042, 1063, 1095 |
| FaqI | GGGAC | 1 cut(s) | 1429 |
| FauNDI | CATATG | 1 cut(s) | 1698 |
| FbaI | TGATCA | 1 cut(s) | 210 |
| FblI | GTMKAC | 1 cut(s) | 714 |
| Fnu4HI | GCNGC | 1 cut(s) | 447 |
| FokI | GGATG | 4 cut(s) | 835, 1256, 1283, 1636 |
| Fsp4HI | GCNGC | 1 cut(s) | 447 |
| FspBI | CTAG | 3 cut(s) | 287, 663, 1386 |
| GlaI | GCGC | 1 cut(s) | 660 |
| GluI | GCNGC | 1 cut(s) | 447 |
| HaeII | RGCGCY | 1 cut(s) | 662 |
| HaeIII | GGCC | 1 cut(s) | 327 |
| HapII | CCGG | 2 cut(s) | 324, 553 |
| HhaI | GCGC | 1 cut(s) | 661 |
| Hin1I | GRCGYC | 1 cut(s) | 659 |
| Hin6I | GCGC | 1 cut(s) | 659 |
| HinP1I | GCGC | 1 cut(s) | 659 |
| HindIII | AAGCTT | 1 cut(s) | 1712 |
| HinfI | GANTC | 8 cut(s) | 169, 556, 572, 716, 882, 1057, 1156, 1411 |
| HpaII | CCGG | 2 cut(s) | 324, 553 |
| HphI | GGTGA | 4 cut(s) | 142, 323, 877, 1001 |
| Hpy166II | GTNNAC | 4 cut(s) | 715, 1042, 1528, 1600 |
| Hpy188I | TCNGA | 6 cut(s) | 174, 561, 622, 1017, 1048, 1668 |
| Hpy8I | GTNNAC | 4 cut(s) | 715, 1042, 1528, 1600 |
| Hpy99I | CGWCG | 2 cut(s) | 1343, 1346 |
| HpyAV | CCTTC | 8 cut(s) | 45, 397, 476, 631, 722, 1022, 1227, 1630 |
| HpyCH4III | ACNGT | 3 cut(s) | 438, 865, 1443 |
| HpyCH4IV | ACGT | 1 cut(s) | 933 |
| HpyCH4V | TGCA | 9 cut(s) | 244, 449, 645, 685, 734, 996, 1681, 1696, 1704 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 638 |
| HpyF3I | CTNAG | 4 cut(s) | 504, 1055, 1114, 1200 |
| HpySE526I | ACGT | 1 cut(s) | 933 |
| Hsp92I | GRCGYC | 1 cut(s) | 659 |
| HspAI | GCGC | 1 cut(s) | 659 |
| KasI | GGCGCC | 1 cut(s) | 658 |
| Kpn2I | TCCGGA | 1 cut(s) | 552 |
| Ksp22I | TGATCA | 1 cut(s) | 210 |
| LmnI | GCTCC | 3 cut(s) | 255, 436, 1427 |
| Lsp1109I | GCAGC | 1 cut(s) | 433 |
| MaeI | CTAG | 3 cut(s) | 287, 663, 1386 |
| MaeII | ACGT | 1 cut(s) | 933 |
| MaeIII | GTNAC | 5 cut(s) | 940, 988, 1030, 1299, 1457 |
| MfeI | CAATTG | 2 cut(s) | 745, 1587 |
| MflI | RGATCY | 1 cut(s) | 359 |
| MluCI | AATT | 8 cut(s) | 57, 175, 366, 745, 997, 1561, 1587, 1627 |
| Mly113I | GGCGCC | 1 cut(s) | 659 |
| MlyI | GAGTC | 3 cut(s) | 710, 1066, 1405 |
| MmeI | TCCRAC | 5 cut(s) | 202, 380, 820, 1068, 1210 |
| MroI | TCCGGA | 1 cut(s) | 552 |
| MroXI | GAANNNNTTC | 2 cut(s) | 798, 1292 |
| MseI | TTAA | 8 cut(s) | 6, 515, 600, 654, 867, 960, 1281, 1391 |
| MslI | CAYNNNNRTG | 2 cut(s) | 672, 1364 |
| MspA1I | CMGCKG | 1 cut(s) | 298 |
| MspCI | CTTAAG | 2 cut(s) | 653, 1280 |
| MspI | CCGG | 2 cut(s) | 324, 553 |
| MspR9I | CCNGG | 2 cut(s) | 354, 586 |
| MunI | CAATTG | 2 cut(s) | 745, 1587 |
| MvaI | CCWGG | 2 cut(s) | 354, 586 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 638 |
| NarI | GGCGCC | 1 cut(s) | 659 |
| NdeI | CATATG | 1 cut(s) | 1698 |
| NlaIV | GGNNCC | 3 cut(s) | 361, 660, 1423 |
| NmuCI | GTSAC | 3 cut(s) | 1030, 1299, 1457 |
| NspI | RCATGY | 2 cut(s) | 645, 1369 |
| NspV | TTCGAA | 1 cut(s) | 1559 |
| PaeI | GCATGC | 1 cut(s) | 645 |
| PagI | TCATGA | 3 cut(s) | 261, 667, 1687 |
| PciI | ACATGT | 1 cut(s) | 1365 |
| PdmI | GAANNNNTTC | 2 cut(s) | 798, 1292 |
| PfeI | GAWTC | 5 cut(s) | 169, 556, 572, 882, 1156 |
| PflFI | GACNNNGTC | 1 cut(s) | 1537 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 633 |
| PkrI | GCNGC | 1 cut(s) | 448 |
| PleI | GAGTC | 3 cut(s) | 710, 1065, 1405 |
| PluTI | GGCGCC | 1 cut(s) | 662 |
| PpsI | GAGTC | 3 cut(s) | 710, 1065, 1405 |
| Ppu21I | YACGTR | 1 cut(s) | 934 |
| PscI | ACATGT | 1 cut(s) | 1365 |
| PsiI | TTATAA | 1 cut(s) | 1166 |
| Psp6I | CCWGG | 2 cut(s) | 352, 584 |
| PspGI | CCWGG | 2 cut(s) | 352, 584 |
| PspN4I | GGNNCC | 3 cut(s) | 361, 660, 1423 |
| PsuI | RGATCY | 1 cut(s) | 359 |
| PsyI | GACNNNGTC | 1 cut(s) | 1537 |
| PvuII | CAGCTG | 1 cut(s) | 298 |
| RsaI | GTAC | 4 cut(s) | 738, 966, 1207, 1370 |
| RsaNI | GTAC | 4 cut(s) | 737, 965, 1206, 1369 |
| RseI | CAYNNNNRTG | 2 cut(s) | 672, 1364 |
| SaqAI | TTAA | 8 cut(s) | 6, 515, 600, 654, 867, 960, 1281, 1391 |
| SatI | GCNGC | 1 cut(s) | 447 |
| ScaI | AGTACT | 1 cut(s) | 738 |
| SchI | GAGTC | 3 cut(s) | 710, 1066, 1405 |
| ScrFI | CCNGG | 2 cut(s) | 354, 586 |
| SfcI | CTRYAG | 1 cut(s) | 1351 |
| SfoI | GGCGCC | 1 cut(s) | 660 |
| SfuI | TTCGAA | 1 cut(s) | 1559 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 672, 1364 |
| SmlI | CTYRAG | 3 cut(s) | 653, 1280, 1373 |
| SmoI | CTYRAG | 3 cut(s) | 653, 1280, 1373 |
| SnaBI | TACGTA | 1 cut(s) | 934 |
| SpeI | ACTAGT | 1 cut(s) | 286 |
| SphI | GCATGC | 1 cut(s) | 645 |
| Sse9I | AATT | 8 cut(s) | 57, 175, 366, 745, 997, 1561, 1587, 1627 |
| SsiI | CCGC | 1 cut(s) | 187 |
| SspDI | GGCGCC | 1 cut(s) | 658 |
| SspMI | CTAG | 3 cut(s) | 287, 663, 1386 |
| StyD4I | CCNGG | 2 cut(s) | 352, 584 |
| StyI | CCWWGG | 1 cut(s) | 1425 |
| TaaI | ACNGT | 3 cut(s) | 438, 865, 1443 |
| TaiI | ACGT | 1 cut(s) | 936 |
| TaqI | TCGA | 5 cut(s) | 25, 792, 948, 1480, 1559 |
| TaqII | GACCGA | 1 cut(s) | 1595 |
| TasI | AATT | 8 cut(s) | 57, 175, 366, 745, 997, 1561, 1587, 1627 |
| TatI | WGTACW | 1 cut(s) | 736 |
| TfiI | GAWTC | 5 cut(s) | 169, 556, 572, 882, 1156 |
| Tru1I | TTAA | 8 cut(s) | 6, 515, 600, 654, 867, 960, 1281, 1391 |
| Tru9I | TTAA | 8 cut(s) | 6, 515, 600, 654, 867, 960, 1281, 1391 |
| TscAI | CASTG | 4 cut(s) | 441, 692, 863, 1263 |
| TseFI | GTSAC | 3 cut(s) | 1030, 1299, 1457 |
| TseI | GCWGC | 1 cut(s) | 446 |
| Tsp45I | GTSAC | 3 cut(s) | 1030, 1299, 1457 |
| TspDTI | ATGAA | 7 cut(s) | 522, 684, 778, 1072, 1301, 1640, 1676 |
| TspGWI | ACGGA | 2 cut(s) | 326, 1636 |
| TspRI | CASTG | 4 cut(s) | 441, 692, 863, 1263 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1537 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 633 |
| Vha464I | CTTAAG | 2 cut(s) | 653, 1280 |
| XapI | RAATTY | 2 cut(s) | 366, 1627 |
| XceI | RCATGY | 2 cut(s) | 645, 1369 |
| XmiI | GTMKAC | 1 cut(s) | 714 |
| XmnI | GAANNNNTTC | 2 cut(s) | 798, 1292 |
| XspI | CTAG | 3 cut(s) | 287, 663, 1386 |
| ZrmI | AGTACT | 1 cut(s) | 738 |