Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g05590 FvH4_6g05590 FvH4_6g05590 |
| malus_domestica | MD04G1207200.v1.1 MD17G1055000.v1.1 |
| prunus_persica | Prupe.6G328100_v2.0.a1 |
| pyrus_communis | pycom04g18330 |
| rosa_chinensis | RchiOBHm_Chr3g0454371 |
| rosa_laevigata | RLG00000025449 RLG00000025456 |
| rosa_multiflora | Rmu_sc0036936.1_g000001 |
| rosa_roxburghii | Rroxscaffold_165G00437190 Rroxscaffold_6G00425160 |
| rosa_rugosa | Rorug02G0654500 |
| rosa_samantha | Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700 |
| rosa_wichuraiana | Rw3G004520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 597, 1163 |
| Acc36I | ACCTGC | 1 cut(s) | 329 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 630 |
| AccIII | TCCGGA | 1 cut(s) | 549 |
| AciI | CCGC | 2 cut(s) | 334, 1583 |
| AclWI | GGATC | 5 cut(s) | 847, 1095, 1413, 1426, 1561 |
| AcsI | RAATTY | 4 cut(s) | 133, 363, 506, 1624 |
| AcuI | CTGAAG | 3 cut(s) | 30, 1034, 1745 |
| AfaI | GTAC | 2 cut(s) | 963, 1367 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 630 |
| AflII | CTTAAG | 1 cut(s) | 1277 |
| AflIII | ACRYGT | 2 cut(s) | 1362, 1695 |
| AhlI | ACTAGT | 1 cut(s) | 286 |
| AjnI | CCWGG | 2 cut(s) | 349, 581 |
| Alw26I | GTCTC | 1 cut(s) | 1658 |
| AlwI | GGATC | 5 cut(s) | 847, 1095, 1413, 1426, 1561 |
| Aor13HI | TCCGGA | 1 cut(s) | 549 |
| AoxI | GGCC | 1 cut(s) | 636 |
| ApeKI | GCWGC | 1 cut(s) | 443 |
| ApoI | RAATTY | 4 cut(s) | 133, 363, 506, 1624 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 795, 1289 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 874, 998 |
| BamHI | GGATCC | 1 cut(s) | 1418 |
| BauI | CACGAG | 1 cut(s) | 1452 |
| BbsI | GAAGAC | 1 cut(s) | 10 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 3 cut(s) | 1235, 1611, 1627 |
| BciT130I | CCWGG | 2 cut(s) | 351, 583 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BclI | TGATCA | 1 cut(s) | 210 |
| BcoDI | GTCTC | 1 cut(s) | 1658 |
| BcuI | ACTAGT | 1 cut(s) | 286 |
| BfaI | CTAG | 4 cut(s) | 287, 1103, 1317, 1383 |
| BfmI | CTRYAG | 2 cut(s) | 969, 1348 |
| BfrI | CTTAAG | 1 cut(s) | 1277 |
| BfuAI | ACCTGC | 1 cut(s) | 329 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BglII | AGATCT | 1 cut(s) | 1105 |
| BisI | GCNGC | 1 cut(s) | 444 |
| BlsI | GCNGC | 1 cut(s) | 445 |
| Bme1390I | CCNGG | 2 cut(s) | 351, 583 |
| BmiI | GGNNCC | 1 cut(s) | 1420 |
| BmrFI | CCNGG | 2 cut(s) | 351, 583 |
| BmsI | GCATC | 1 cut(s) | 721 |
| BpiI | GAAGAC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 2 cut(s) | 635, 1355 |
| BsaAI | YACGTR | 1 cut(s) | 931 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1152, 1245 |
| BsaJI | CCNNGG | 3 cut(s) | 255, 582, 1422 |
| BsaWI | WCCGGW | 2 cut(s) | 127, 549 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 630 |
| Bse1I | ACTGG | 3 cut(s) | 182, 1260, 1294 |
| Bse3DI | GCAATG | 2 cut(s) | 624, 1310 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1152, 1245 |
| BseAI | TCCGGA | 1 cut(s) | 549 |
| BseBI | CCWGG | 2 cut(s) | 351, 583 |
| BseDI | CCNNGG | 3 cut(s) | 255, 582, 1422 |
| BseGI | GGATG | 7 cut(s) | 764, 825, 1246, 1273, 1622, 1626, 1735 |
| BseJI | GATNNNNATC | 2 cut(s) | 1152, 1245 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 630 |
| BseMI | GCAATG | 2 cut(s) | 624, 1310 |
| BseMII | CTCAG | 3 cut(s) | 492, 630, 1592 |
| BseNI | ACTGG | 3 cut(s) | 182, 1260, 1294 |
| BseRI | GAGGAG | 1 cut(s) | 989 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BsgI | GTGCAG | 2 cut(s) | 429, 625 |
| BshFI | GGCC | 1 cut(s) | 638 |
| BsiSI | CCGG | 2 cut(s) | 128, 550 |
| BslFI | GGGAC | 1 cut(s) | 1188 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 630 |
| BsmAI | GTCTC | 1 cut(s) | 1658 |
| BsmFI | GGGAC | 1 cut(s) | 1188 |
| BsnI | GGCC | 1 cut(s) | 638 |
| Bsp13I | TCCGGA | 1 cut(s) | 549 |
| Bsp143I | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| Bsp19I | CCATGG | 1 cut(s) | 255 |
| BspACI | CCGC | 2 cut(s) | 334, 1583 |
| BspANI | GGCC | 1 cut(s) | 638 |
| BspCNI | CTCAG | 3 cut(s) | 493, 629, 1591 |
| BspEI | TCCGGA | 1 cut(s) | 549 |
| BspHI | TCATGA | 2 cut(s) | 261, 664 |
| BspLI | GGNNCC | 1 cut(s) | 1420 |
| BspMAI | CTGCAG | 1 cut(s) | 973 |
| BspMI | ACCTGC | 1 cut(s) | 329 |
| BspPI | GGATC | 5 cut(s) | 847, 1095, 1413, 1426, 1561 |
| BspTI | CTTAAG | 1 cut(s) | 1277 |
| BsrDI | GCAATG | 2 cut(s) | 624, 1310 |
| BsrI | ACTGG | 3 cut(s) | 182, 1260, 1294 |
| BssECI | CCNNGG | 3 cut(s) | 255, 582, 1422 |
| BssMI | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| BssSI | CACGAG | 1 cut(s) | 1452 |
| BssT1I | CCWWGG | 2 cut(s) | 255, 1422 |
| Bst2BI | CACGAG | 1 cut(s) | 1452 |
| Bst2UI | CCWGG | 2 cut(s) | 351, 583 |
| Bst4CI | ACNGT | 5 cut(s) | 435, 743, 862, 1440, 1503 |
| BstAFI | CTTAAG | 1 cut(s) | 1277 |
| BstBAI | YACGTR | 1 cut(s) | 931 |
| BstC8I | GCNNGC | 2 cut(s) | 640, 969 |
| BstDEI | CTNAG | 4 cut(s) | 501, 512, 616, 1578 |
| BstDSI | CCRYGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 7 cut(s) | 764, 825, 1246, 1273, 1622, 1626, 1735 |
| BstKTI | GATC | 8 cut(s) | 213, 781, 842, 1090, 1108, 1421, 1477, 1556 |
| BstMAI | GTCTC | 1 cut(s) | 1658 |
| BstMBI | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 197, 635 |
| BstNI | CCWGG | 2 cut(s) | 351, 583 |
| BstNSI | RCATGY | 3 cut(s) | 1366, 1463, 1699 |
| BstSCI | CCNGG | 2 cut(s) | 349, 581 |
| BstSFI | CTRYAG | 2 cut(s) | 969, 1348 |
| BstSNI | TACGTA | 1 cut(s) | 931 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstV2I | GAAGAC | 1 cut(s) | 10 |
| BstX2I | RGATCY | 3 cut(s) | 1105, 1418, 1553 |
| BstYI | RGATCY | 3 cut(s) | 1105, 1418, 1553 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 638 |
| BtgI | CCRYGG | 1 cut(s) | 255 |
| BtsCI | GGATG | 7 cut(s) | 764, 825, 1246, 1273, 1622, 1626, 1735 |
| BtsI | GCAGTG | 1 cut(s) | 689 |
| BtsIMutI | CAGTG | 3 cut(s) | 431, 689, 1253 |
| BveI | ACCTGC | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 2 cut(s) | 640, 969 |
| CciI | TCATGA | 2 cut(s) | 261, 664 |
| Csp6I | GTAC | 2 cut(s) | 962, 1366 |
| CviQI | GTAC | 2 cut(s) | 962, 1366 |
| DdeI | CTNAG | 4 cut(s) | 501, 512, 616, 1578 |
| DpnI | GATC | 8 cut(s) | 212, 780, 841, 1089, 1107, 1420, 1476, 1555 |
| DpnII | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| Eco105I | TACGTA | 1 cut(s) | 931 |
| Eco130I | CCWWGG | 2 cut(s) | 255, 1422 |
| Eco147I | AGGCCT | 1 cut(s) | 638 |
| Eco57I | CTGAAG | 3 cut(s) | 30, 1034, 1745 |
| EcoRI | GAATTC | 2 cut(s) | 133, 1624 |
| EcoRII | CCWGG | 2 cut(s) | 349, 581 |
| EcoT14I | CCWWGG | 2 cut(s) | 255, 1422 |
| ErhI | CCWWGG | 2 cut(s) | 255, 1422 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1060, 1092 |
| FaqI | GGGAC | 1 cut(s) | 1188 |
| FauNDI | CATATG | 1 cut(s) | 915 |
| FbaI | TGATCA | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 1 cut(s) | 444 |
| FokI | GGATG | 7 cut(s) | 751, 832, 1253, 1280, 1629, 1633, 1742 |
| Fsp4HI | GCNGC | 1 cut(s) | 444 |
| FspBI | CTAG | 4 cut(s) | 287, 1103, 1317, 1383 |
| GluI | GCNGC | 1 cut(s) | 444 |
| HaeIII | GGCC | 1 cut(s) | 638 |
| HapII | CCGG | 2 cut(s) | 128, 550 |
| HincII | GTYRAC | 1 cut(s) | 1597 |
| HindII | GTYRAC | 1 cut(s) | 1597 |
| HindIII | AAGCTT | 2 cut(s) | 514, 1709 |
| HinfI | GANTC | 8 cut(s) | 169, 227, 569, 879, 1054, 1153, 1408, 1576 |
| HpaI | GTTAAC | 1 cut(s) | 1597 |
| HpaII | CCGG | 2 cut(s) | 128, 550 |
| HphI | GGTGA | 3 cut(s) | 142, 874, 998 |
| Hpy166II | GTNNAC | 1 cut(s) | 1597 |
| Hpy188I | TCNGA | 5 cut(s) | 174, 619, 1014, 1045, 1444 |
| Hpy8I | GTNNAC | 1 cut(s) | 1597 |
| Hpy99I | CGWCG | 1 cut(s) | 1340 |
| HpyAV | CCTTC | 6 cut(s) | 394, 628, 1019, 1224, 1666, 1720 |
| HpyCH4III | ACNGT | 5 cut(s) | 435, 743, 862, 1440, 1503 |
| HpyCH4IV | ACGT | 1 cut(s) | 930 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 197, 635 |
| HpyF3I | CTNAG | 4 cut(s) | 501, 512, 616, 1578 |
| HpySE526I | ACGT | 1 cut(s) | 930 |
| Kpn2I | TCCGGA | 1 cut(s) | 549 |
| Ksp22I | TGATCA | 1 cut(s) | 210 |
| KspAI | GTTAAC | 1 cut(s) | 1597 |
| Kzo9I | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| LmnI | GCTCC | 2 cut(s) | 255, 433 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| LweI | GCATC | 1 cut(s) | 721 |
| MaeI | CTAG | 4 cut(s) | 287, 1103, 1317, 1383 |
| MaeII | ACGT | 1 cut(s) | 930 |
| MaeIII | GTNAC | 6 cut(s) | 107, 937, 985, 1027, 1296, 1462 |
| MalI | GATC | 8 cut(s) | 212, 780, 841, 1089, 1107, 1420, 1476, 1555 |
| MboI | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| MflI | RGATCY | 3 cut(s) | 1105, 1418, 1553 |
| MlyI | GAGTC | 2 cut(s) | 1402, 1570 |
| MmeI | TCCRAC | 5 cut(s) | 202, 377, 817, 1065, 1207 |
| MnlI | CCTC | 9 cut(s) | 95, 496, 659, 895, 967, 1110, 1379, 1527, 1651 |
| MroI | TCCGGA | 1 cut(s) | 549 |
| MroXI | GAANNNNTTC | 2 cut(s) | 795, 1289 |
| MslI | CAYNNNNRTG | 4 cut(s) | 260, 669, 791, 1361 |
| MspA1I | CMGCKG | 1 cut(s) | 416 |
| MspCI | CTTAAG | 1 cut(s) | 1277 |
| MspI | CCGG | 2 cut(s) | 128, 550 |
| MspR9I | CCNGG | 2 cut(s) | 351, 583 |
| MvaI | CCWGG | 2 cut(s) | 351, 583 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 197, 635 |
| NcoI | CCATGG | 1 cut(s) | 255 |
| NdeI | CATATG | 1 cut(s) | 915 |
| NdeII | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| NlaIV | GGNNCC | 1 cut(s) | 1420 |
| NmuCI | GTSAC | 2 cut(s) | 1027, 1296 |
| NspI | RCATGY | 3 cut(s) | 1366, 1463, 1699 |
| PagI | TCATGA | 2 cut(s) | 261, 664 |
| PceI | AGGCCT | 1 cut(s) | 638 |
| PciI | ACATGT | 2 cut(s) | 1362, 1695 |
| PdmI | GAANNNNTTC | 2 cut(s) | 795, 1289 |
| PfeI | GAWTC | 6 cut(s) | 169, 227, 569, 879, 1054, 1153 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 630 |
| PkrI | GCNGC | 1 cut(s) | 445 |
| PleI | GAGTC | 2 cut(s) | 1402, 1570 |
| PpsI | GAGTC | 2 cut(s) | 1402, 1570 |
| Ppu21I | YACGTR | 1 cut(s) | 931 |
| PscI | ACATGT | 2 cut(s) | 1362, 1695 |
| PsiI | TTATAA | 2 cut(s) | 597, 1163 |
| Psp6I | CCWGG | 2 cut(s) | 349, 581 |
| PspGI | CCWGG | 2 cut(s) | 349, 581 |
| PspN4I | GGNNCC | 1 cut(s) | 1420 |
| PstI | CTGCAG | 1 cut(s) | 973 |
| PsuI | RGATCY | 3 cut(s) | 1105, 1418, 1553 |
| PvuII | CAGCTG | 1 cut(s) | 416 |
| RsaI | GTAC | 2 cut(s) | 963, 1367 |
| RsaNI | GTAC | 2 cut(s) | 962, 1366 |
| RseI | CAYNNNNRTG | 4 cut(s) | 260, 669, 791, 1361 |
| SatI | GCNGC | 1 cut(s) | 444 |
| Sau3AI | GATC | 8 cut(s) | 210, 778, 839, 1087, 1105, 1418, 1474, 1553 |
| SchI | GAGTC | 2 cut(s) | 1402, 1570 |
| ScrFI | CCNGG | 2 cut(s) | 351, 583 |
| SfaNI | GCATC | 1 cut(s) | 721 |
| SfcI | CTRYAG | 2 cut(s) | 969, 1348 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 260, 669, 791, 1361 |
| SmlI | CTYRAG | 3 cut(s) | 650, 1277, 1370 |
| SmoI | CTYRAG | 3 cut(s) | 650, 1277, 1370 |
| SnaBI | TACGTA | 1 cut(s) | 931 |
| SpeI | ACTAGT | 1 cut(s) | 286 |
| SseBI | AGGCCT | 1 cut(s) | 638 |
| SsiI | CCGC | 2 cut(s) | 334, 1583 |
| SspI | AATATT | 1 cut(s) | 1288 |
| SspMI | CTAG | 4 cut(s) | 287, 1103, 1317, 1383 |
| StuI | AGGCCT | 1 cut(s) | 638 |
| StyD4I | CCNGG | 2 cut(s) | 349, 581 |
| StyI | CCWWGG | 2 cut(s) | 255, 1422 |
| TaaI | ACNGT | 5 cut(s) | 435, 743, 862, 1440, 1503 |
| TaiI | ACGT | 1 cut(s) | 933 |
| TaqI | TCGA | 3 cut(s) | 25, 789, 1538 |
| TfiI | GAWTC | 6 cut(s) | 169, 227, 569, 879, 1054, 1153 |
| TscAI | CASTG | 3 cut(s) | 438, 689, 1260 |
| TseFI | GTSAC | 2 cut(s) | 1027, 1296 |
| TseI | GCWGC | 1 cut(s) | 443 |
| Tsp45I | GTSAC | 2 cut(s) | 1027, 1296 |
| TspDTI | ATGAA | 8 cut(s) | 519, 681, 753, 775, 1069, 1298, 1637, 1685 |
| TspRI | CASTG | 3 cut(s) | 438, 689, 1260 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 630 |
| Vha464I | CTTAAG | 1 cut(s) | 1277 |
| XapI | RAATTY | 4 cut(s) | 133, 363, 506, 1624 |
| XbaI | TCTAGA | 1 cut(s) | 1102 |
| XceI | RCATGY | 3 cut(s) | 1366, 1463, 1699 |
| XmnI | GAANNNNTTC | 2 cut(s) | 795, 1289 |
| XspI | CTAG | 4 cut(s) | 287, 1103, 1317, 1383 |