Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0012634

Physical Location & Seq

Genomic Coordinates Forward (+)

279564 .. 282035

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00437190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGTGTCATTTGTCCGGTGAATTCCTGCATGGTTGCGAAACTTTAGACGAAAGGAATCAGAACTGGTTTGTACGGGCGAAAGTTGCAAATGATTTGATCATACAAGTTGGAGATTCCAGCTTTCACTTGCACAAGCTCCCTATGGTCATGAGAAGTGGATACTTGAACAGACTAGTATTCAAGACGAGTAATGTTGAGAGAGGTACCTGCCTCAAAATCCGCATAGACAATCTTCCAGGTGGAAACAAAATTTTTGAGTTAGTTGTCAAGTTTTGTTATGGTCGGAAGGTTGATCTAACAGCTGACAATATCGCTCCACTGTATTGTGCTGCACATTTCTTGGAAATGAGTGATGATTTTGAAGAAGGAAATCTCATGTCCAAAACTGAGGAATTTCTAAGCTTTTTGATATTTTCATCATGGAAAGACACTTTCCGGATTTTGACAAGCTGTGAATCCATTTCTTCCTGGGCAAAAAATTATAAAATCACAAAACGAAGCTCAGAAGCCATTGCTTGGAAGGCCTGCACAAACCTCAAGGCATTTAGTCATGAAGATGATGATATGCAGTGCTTTAGTGTTCTGCCAAATTATGTAGAGAAGTCGAAAGTTGAAGATGCACTTGACAATTGGTGGTTTGAAGATGTTTCATCCCTACGAGTAGATCATTTCATCGAAGTGGTTCAATCCCTAAAATGTAAAGGGATGAGAGCAGACCTTGTTGGATCATGTATAACTTATTGGACTGTTAAATGGCTTTCAAGAATAACCTCTGGACTTGAAAGTATGACCCCCAAGCATATGACCCACCAATACGTAAGAGTTACAACCGAGTGCTTGATTAAGGTACTGCCTGCAGAGGAGAAATCAGTTACTTGTAATTTTATACTTCACCTTCTGAAGATAGGGTTCGTGACAAAAATAAACTCTGATTTACTGAATCTGCTTGAAAGAAGAATAGCTTTCATGTTGGATCAATGTCGTCCTCTAGATCTCTTGGTTAGGAACTATGGAGATAAAGATAGTGTCTATGATGTGAATCTTGTTATAAGAGTGGTAATGGCTTATGTTTCTATTGTTTCCAAAAGTCCCACACCAAAACTGTTTGCTGTTGGAAGGTTGGTGGATGGGTATCTTACACTGGTTGCAAGGGATGAGAACCTTAAGATGAATATTTTCCAGTCACTTGTAGAAGCATTGCCTAGAGATGCTCGTTTTTGCGACGACAATCTCTATAGAGCCATTGACATGTACCTCAAGGCACACCCTAGCTTAACAGAAGAAGAAAGAATGACTCTGTGTGGATCCTTGGAATATCAGAGACTGTCCGAAGAAGCTCGTGAGCATATAAAAAAGAATGATCGGTTGCCCGTGAAGATTACAGCACGGTTTATTCTTCTTGAACAAGTGAATATGATGAGGTCGATGACAGCTATTGGATCTAATTACCGAAGAACAAAGACTCAGGCGGTTGTGAGAGTTAAAAAAGGTTTAGGTAAGGGATGGATGAATTCCCAGAAGGAACTAAACTTAATGATAAAAGAGGTTGAGACAATGAGGGAGCAACTTAATGATTTGCACATGTGTAAATTAAAGCTTCAAAATCAACTGAAAGGATGTATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

542

Amino Acids

62.53

Weight (kDa)

8.52

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	30 - 118	1e-08	BTB/POZ domain
NPH3	PF03000	210 - 446	8.5e-70	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05590 FvH4_6g05590 FvH4_6g05590
malus_domestica	MD04G1207200.v1.1 MD17G1055000.v1.1
prunus_persica	Prupe.6G328100_v2.0.a1
pyrus_communis	pycom04g18330
rosa_chinensis	RchiOBHm_Chr3g0454371
rosa_laevigata	RLG00000025449 RLG00000025456
rosa_multiflora	Rmu_sc0036936.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437190 Rroxscaffold_6G00425160
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700
rosa_wichuraiana	Rw3G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	483, 1049
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccIII	TCCGGA	1 cut(s)	435
AciI	CCGC	2 cut(s)	220, 1469
AclWI	GGATC	5 cut(s)	733, 981, 1299, 1312, 1447
AcsI	RAATTY	4 cut(s)	20, 249, 392, 1510
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	4 cut(s)	72, 205, 849, 1253
AfiI	CCNNNNNNNGG	1 cut(s)	516
AflII	CTTAAG	1 cut(s)	1163
AflIII	ACRYGT	2 cut(s)	1248, 1581
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	235, 467
Alw26I	GTCTC	2 cut(s)	1315, 1544
AlwI	GGATC	5 cut(s)	733, 981, 1299, 1312, 1447
AlwNI	CAGNNNCTG	1 cut(s)	1324
Aor13HI	TCCGGA	1 cut(s)	435
AoxI	GGCC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	4 cut(s)	20, 249, 392, 1510
Asp700I	GAANNNNTTC	2 cut(s)	681, 1175
Asp718I	GGTACC	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	29, 884
BamHI	GGATCC	1 cut(s)	1304
BanI	GGYRCC	1 cut(s)	203
BauI	CACGAG	1 cut(s)	1338
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	1121, 1497
BciT130I	CCWGG	2 cut(s)	237, 469
BciVI	GTATCC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	1315, 1544
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	4 cut(s)	173, 989, 1203, 1269
BfmI	CTRYAG	2 cut(s)	855, 1234
BfrI	CTTAAG	1 cut(s)	1163
BfuAI	ACCTGC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	152
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	237, 469
BmiI	GGNNCC	2 cut(s)	205, 1306
BmrFI	CCNGG	2 cut(s)	237, 469
BmsI	GCATC	2 cut(s)	607, 1198
BpuEI	CTTGAG	2 cut(s)	521, 1241
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	2 cut(s)	1038, 1131
BsaJI	CCNNGG	2 cut(s)	468, 1308
BsaWI	WCCGGW	2 cut(s)	14, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse1I	ACTGG	3 cut(s)	68, 1146, 1180
Bse3DI	GCAATG	2 cut(s)	510, 1196
Bse8I	GATNNNNATC	2 cut(s)	1038, 1131
BseAI	TCCGGA	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	237, 469
BseDI	CCNNGG	2 cut(s)	468, 1308
BseGI	GGATG	7 cut(s)	650, 711, 1132, 1159, 1508, 1512, 1622
BseJI	GATNNNNATC	2 cut(s)	1038, 1131
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	2 cut(s)	510, 1196
BseMII	CTCAG	3 cut(s)	378, 516, 1478
BseNI	ACTGG	3 cut(s)	68, 1146, 1180
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	1 cut(s)	316
BsgI	GTGCAG	2 cut(s)	315, 511
BshFI	GGCC	1 cut(s)	524
BshNI	GGYRCC	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	15, 436
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	1315, 1544
BsmFI	GGGAC	1 cut(s)	1074
BsnI	GGCC	1 cut(s)	524
Bsp13I	TCCGGA	1 cut(s)	435
Bsp143I	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
BspACI	CCGC	2 cut(s)	220, 1469
BspANI	GGCC	1 cut(s)	524
BspCNI	CTCAG	3 cut(s)	379, 515, 1477
BspEI	TCCGGA	1 cut(s)	435
BspHI	TCATGA	2 cut(s)	147, 550
BspLI	GGNNCC	2 cut(s)	205, 1306
BspMAI	CTGCAG	1 cut(s)	859
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	5 cut(s)	733, 981, 1299, 1312, 1447
BspT107I	GGYRCC	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	1163
BsrDI	GCAATG	2 cut(s)	510, 1196
BsrI	ACTGG	3 cut(s)	68, 1146, 1180
BssECI	CCNNGG	2 cut(s)	468, 1308
BssMI	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
BssSI	CACGAG	1 cut(s)	1338
BssT1I	CCWWGG	1 cut(s)	1308
Bst2BI	CACGAG	1 cut(s)	1338
Bst2UI	CCWGG	2 cut(s)	237, 469
Bst4CI	ACNGT	5 cut(s)	321, 748, 1104, 1326, 1389
BstAFI	CTTAAG	1 cut(s)	1163
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	526, 855
BstDEI	CTNAG	4 cut(s)	387, 398, 502, 1464
BstF5I	GGATG	7 cut(s)	650, 711, 1132, 1159, 1508, 1512, 1622
BstKTI	GATC	9 cut(s)	99, 295, 667, 728, 976, 994, 1307, 1363, 1442
BstMAI	GTCTC	2 cut(s)	1315, 1544
BstMBI	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 521
BstNI	CCWGG	2 cut(s)	237, 469
BstNSI	RCATGY	2 cut(s)	1252, 1585
BstSCI	CCNGG	2 cut(s)	235, 467
BstSFI	CTRYAG	2 cut(s)	855, 1234
BstSNI	TACGTA	1 cut(s)	817
BstV1I	GCAGC	1 cut(s)	316
BstX2I	RGATCY	3 cut(s)	991, 1304, 1439
BstYI	RGATCY	3 cut(s)	991, 1304, 1439
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	524
BtsCI	GGATG	7 cut(s)	650, 711, 1132, 1159, 1508, 1512, 1622
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	3 cut(s)	317, 575, 1139
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	526, 855
CaiI	CAGNNNCTG	1 cut(s)	1324
CciI	TCATGA	2 cut(s)	147, 550
Csp6I	GTAC	4 cut(s)	71, 204, 848, 1252
CviAII	CATG	9 cut(s)	29, 148, 376, 420, 551, 729, 967, 1249, 1582
CviQI	GTAC	4 cut(s)	71, 204, 848, 1252
DdeI	CTNAG	4 cut(s)	387, 398, 502, 1464
DpnI	GATC	9 cut(s)	98, 294, 666, 727, 975, 993, 1306, 1362, 1441
DpnII	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
Eco105I	TACGTA	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	1308
Eco147I	AGGCCT	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	920
EcoRI	GAATTC	2 cut(s)	20, 1510
EcoRII	CCWGG	2 cut(s)	235, 467
EcoT14I	CCWWGG	1 cut(s)	1308
ErhI	CCWWGG	1 cut(s)	1308
FaeI	CATG	9 cut(s)	32, 151, 379, 423, 554, 732, 970, 1252, 1585
FalI	AAGNNNNNCTT	4 cut(s)	606, 638, 946, 978
FaqI	GGGAC	1 cut(s)	1074
FatI	CATG	9 cut(s)	28, 147, 375, 419, 550, 728, 966, 1248, 1581
FauNDI	CATATG	1 cut(s)	801
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	6 cut(s)	637, 718, 1139, 1166, 1515, 1519
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	4 cut(s)	173, 989, 1203, 1269
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	2 cut(s)	15, 436
Hin1II	CATG	9 cut(s)	32, 151, 379, 423, 554, 732, 970, 1252, 1585
HindIII	AAGCTT	2 cut(s)	400, 1595
HinfI	GANTC	7 cut(s)	55, 113, 455, 940, 1039, 1294, 1462
HpaII	CCGG	2 cut(s)	15, 436
HphI	GGTGA	2 cut(s)	29, 884
Hpy188I	TCNGA	7 cut(s)	60, 285, 505, 900, 931, 1320, 1330
Hpy99I	CGWCG	1 cut(s)	1226
HpyAV	CCTTC	6 cut(s)	280, 359, 514, 905, 1110, 1513
HpyCH4III	ACNGT	5 cut(s)	321, 748, 1104, 1326, 1389
HpyCH4IV	ACGT	1 cut(s)	816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 521
HpyF3I	CTNAG	4 cut(s)	387, 398, 502, 1464
HpySE526I	ACGT	1 cut(s)	816
Hsp92II	CATG	9 cut(s)	32, 151, 379, 423, 554, 732, 970, 1252, 1585
Kpn2I	TCCGGA	1 cut(s)	435
KpnI	GGTACC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
LmnI	GCTCC	3 cut(s)	141, 319, 1561
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	607, 1198
MaeI	CTAG	4 cut(s)	173, 989, 1203, 1269
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	4 cut(s)	823, 871, 913, 1182
MalI	GATC	9 cut(s)	98, 294, 666, 727, 975, 993, 1306, 1362, 1441
MboI	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
MfeI	CAATTG	1 cut(s)	628
MflI	RGATCY	3 cut(s)	991, 1304, 1439
MlyI	GAGTC	2 cut(s)	1288, 1456
MmeI	TCCRAC	5 cut(s)	88, 263, 703, 951, 1093
MroI	TCCGGA	1 cut(s)	435
MroXI	GAANNNNTTC	2 cut(s)	681, 1175
MseI	TTAA	8 cut(s)	750, 843, 1164, 1274, 1482, 1532, 1569, 1592
MslI	CAYNNNNRTG	3 cut(s)	555, 677, 1247
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	1163
MspI	CCGG	2 cut(s)	15, 436
MspR9I	CCNGG	2 cut(s)	237, 469
MunI	CAATTG	1 cut(s)	628
MvaI	CCWGG	2 cut(s)	237, 469
MwoI	GCNNNNNNNGC	2 cut(s)	83, 521
NdeI	CATATG	1 cut(s)	801
NdeII	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
NlaIII	CATG	9 cut(s)	32, 151, 379, 423, 554, 732, 970, 1252, 1585
NlaIV	GGNNCC	2 cut(s)	205, 1306
NmuCI	GTSAC	2 cut(s)	913, 1182
NspI	RCATGY	2 cut(s)	1252, 1585
PagI	TCATGA	2 cut(s)	147, 550
PceI	AGGCCT	1 cut(s)	524
PciI	ACATGT	2 cut(s)	1248, 1581
PdmI	GAANNNNTTC	2 cut(s)	681, 1175
PfeI	GAWTC	5 cut(s)	55, 113, 455, 940, 1039
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	1288, 1456
PpsI	GAGTC	2 cut(s)	1288, 1456
Ppu21I	YACGTR	1 cut(s)	817
PscI	ACATGT	2 cut(s)	1248, 1581
PsiI	TTATAA	2 cut(s)	483, 1049
Psp6I	CCWGG	2 cut(s)	235, 467
PspGI	CCWGG	2 cut(s)	235, 467
PspN4I	GGNNCC	2 cut(s)	205, 1306
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	1 cut(s)	1324
PsuI	RGATCY	3 cut(s)	991, 1304, 1439
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	4 cut(s)	72, 205, 849, 1253
RsaNI	GTAC	4 cut(s)	71, 204, 848, 1252
RseI	CAYNNNNRTG	3 cut(s)	555, 677, 1247
SaqAI	TTAA	8 cut(s)	750, 843, 1164, 1274, 1482, 1532, 1569, 1592
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	9 cut(s)	96, 292, 664, 725, 973, 991, 1304, 1360, 1439
SchI	GAGTC	2 cut(s)	1288, 1456
ScrFI	CCNGG	2 cut(s)	237, 469
SfaNI	GCATC	2 cut(s)	607, 1198
SfcI	CTRYAG	2 cut(s)	855, 1234
SmiMI	CAYNNNNRTG	3 cut(s)	555, 677, 1247
SmlI	CTYRAG	3 cut(s)	536, 1163, 1256
SmoI	CTYRAG	3 cut(s)	536, 1163, 1256
SnaBI	TACGTA	1 cut(s)	817
SpeI	ACTAGT	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	2 cut(s)	220, 1469
SspI	AATATT	1 cut(s)	1174
SspMI	CTAG	4 cut(s)	173, 989, 1203, 1269
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	235, 467
StyI	CCWWGG	1 cut(s)	1308
TaaI	ACNGT	5 cut(s)	321, 748, 1104, 1326, 1389
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	605, 675, 1424
TfiI	GAWTC	5 cut(s)	55, 113, 455, 940, 1039
Tru1I	TTAA	8 cut(s)	750, 843, 1164, 1274, 1482, 1532, 1569, 1592
Tru9I	TTAA	8 cut(s)	750, 843, 1164, 1274, 1482, 1532, 1569, 1592
TscAI	CASTG	3 cut(s)	324, 575, 1146
TseFI	GTSAC	2 cut(s)	913, 1182
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	913, 1182
TspDTI	ATGAA	7 cut(s)	405, 567, 639, 661, 955, 1184, 1523
TspRI	CASTG	3 cut(s)	324, 575, 1146
Van91I	CCANNNNNTGG	1 cut(s)	516
Vha464I	CTTAAG	1 cut(s)	1163
XapI	RAATTY	4 cut(s)	20, 249, 392, 1510
XbaI	TCTAGA	1 cut(s)	988
XceI	RCATGY	2 cut(s)	1252, 1585
XmnI	GAANNNNTTC	2 cut(s)	681, 1175
XspI	CTAG	4 cut(s)	173, 989, 1203, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.