Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012634

Physical Location & Seq

Genomic Coordinates Reverse (-)

28744674 .. 28747274

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGCCAGAGACTCCAAACTTGTTTGTCAAGAATAATTTCTCTCTGTGTTCAAACTTTTATGCAAAAATGCAAGGCTTTGTCTTCCCTGGAATTGACAGGCCTGCCACAGGCATGAAAAGTGTTGATAGAGAATATCCTGCACACCGTTCAGTATCTGGTGGGAGGCAAAGCAAATGCGTCATGTCACCATCCAATGCTGGCATGGTTGCTGAAACTATAGAGAGAAGAAATAAGCACTGGTTTGTCCAGACAAAAGTGGCAAGTGATTTGATCATACAAGTTGGAGATTCCAGCTTTCACTTGCATAAGCTCCCGATGGTCATGAGAAGTGGACACTTGAACAGACTAGTATTCCAGAGAAGTGACGCAGAGAGAGAAACCAGCAGCAAAATTCACATGGACAATCTTCCAGGTGGAACCAAAGTTTTTGAATTAGTAGTCAAGTTCTGTTATGGTTGGAAGGCTGATCTAACAGCTGCCAACATTGCTCCACTATATTGTGCTGCACATTTCTTGGAAATGAGTGAGGATTTTGAAGAAGGAAATCTGATATCCAAAACTGAGGCTTTTTTGAGCTTTTTGATATTTTCATCATGGAAAGACACATTTAGGATTTTGAAAAGCTGTGAATCCATTTCTTCATGGGCTAATGAGTTTAAAATCACAAAACGAAGCGCCGAAGCCATTGCTTGGAAGGCCTGCACAAACGTTAAAGCATTTGGTTCTTCTGAGAATGATAATGCACAGTGCTTCAATGTTCTACCAAATAATGCAGAGAACTTAAAGTTTGAAGATGAAGCTGACATTTGGTGGTTTGAAGATGTTTCATCCCTAAGAATAGATCATTTCATTGAAGTGATCCAAGCCCTAAAATGTAAAGGGATGAGAGCAGACCTTGTAGGATCATGTATAGCTCATTGGACTGCTAAGTGGCTTGCACGAATCACTTCTGGGCTTGAAAGAATGACCCTCAAGCATATGACCCATCAATTACTAAGAGTTACAGCTGAGTGCTTGATTAAGGTACTGCCTACAGAGGAGAATTCAGTTACTTGCAATTTTATACTTCATCTTCTTAAGCTGGGGTTCATGACAAAGATAAATTCCGAATTGCTGAGCATGCTTGAAAGACGAATCGCTTTAATGTTGGATCAATGTCGTGCTCCAGATCTCTTGGTTAAGAACTATGGAGGTAAAGATAGTGTCCATGATGTAGGTCTTATTGTAAGGGTGGTGGTGTCTTATGTTTCTATAGTTTTGAGTAGTCCCACACCAAATATGTTCGCTGTTGGAAGGTTGATAGATGGGTATCTTACTCTAGTTGCAAAGGATGAGAACCTTACGGTGAATAGTTTCCAATCACTTGTAGAAGCATTGCCGAAAGACGCTCGGTATTGTGATGACAATCTTTATAGAGCCATTGACATGTACCTCAAGGCACACCCTAGCTTAACAGAAGAAAAAAGAATGAGTCTATGTGGATCCCTGGAATATCATAGACTGTCACAGGAAGCACGCGAGCATGTAATGAAGAATGATAGGTTGCCCCTGAAGATTACGACACGGTTTATCCTTCTTGAACAAGTAAATATGACAAGGTCAATGACAGCTATTGGATCAAATTACCGAAGAACGAAGACTCAGGCAATTGTCAGAGTCAACAAAGGTTTAGGTAAGGGATGGATGAACTCCAAGAAGGAAATAAACTTGATGACAAAAGAGGTTGAGACAATGAGGGTGCAACTCAATGATTTGCAAATGTGTAAATTAAAGCTTCAAAACCAACTGAAAAGGTGCATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

602

Amino Acids

68.37

Weight (kDa)

8.95

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05590 FvH4_6g05590 FvH4_6g05590
malus_domestica	MD04G1207200.v1.1 MD17G1055000.v1.1
prunus_persica	Prupe.6G328100_v2.0.a1
pyrus_communis	pycom04g18330
rosa_chinensis	RchiOBHm_Chr3g0454371
rosa_laevigata	RLG00000025449 RLG00000025456
rosa_multiflora	Rmu_sc0036936.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437190 Rroxscaffold_6G00425160
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700
rosa_wichuraiana	Rw3G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	690
AccII	CGCG	1 cut(s)	1518
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	6 cut(s)	853, 910, 1158, 1476, 1489, 1624
AcsI	RAATTY	3 cut(s)	390, 1042, 1102
AcuI	CTGAAG	1 cut(s)	1571
AfaI	GTAC	2 cut(s)	1026, 1430
AfiI	CCNNNNNNNGG	2 cut(s)	107, 690
AflII	CTTAAG	1 cut(s)	1076
AflIII	ACRYGT	1 cut(s)	1425
AhlI	ACTAGT	1 cut(s)	346
AjnI	CCWGG	3 cut(s)	85, 409, 1485
Alw21I	GWGCWC	1 cut(s)	1165
Alw26I	GTCTC	2 cut(s)	2, 1721
AlwI	GGATC	6 cut(s)	853, 910, 1158, 1476, 1489, 1624
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	98, 696
ApeKI	GCWGC	3 cut(s)	384, 476, 503
ApoI	RAATTY	3 cut(s)	390, 1042, 1102
Asp700I	GAANNNNTTC	3 cut(s)	35, 946, 1352
AspLEI	GCGC	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	177, 1357
BamHI	GGATCC	1 cut(s)	1481
BbsI	GAAGAC	2 cut(s)	73, 1643
Bbv12I	GWGCWC	1 cut(s)	1165
BbvI	GCAGC	3 cut(s)	396, 463, 490
BccI	CCATC	5 cut(s)	196, 310, 993, 1298, 1674
BcgI	CGANNNNNNTGC	2 cut(s)	668, 702
BciT130I	CCWGG	3 cut(s)	87, 411, 1487
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	2, 1721
BcuI	ACTAGT	1 cut(s)	346
BfaI	CTAG	3 cut(s)	347, 1319, 1446
BfmI	CTRYAG	3 cut(s)	216, 1032, 1251
BfoI	RGCGCY	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	1168
BisI	GCNGC	3 cut(s)	385, 477, 504
BlpI	GCTNAGC	1 cut(s)	1115
BlsI	GCNGC	3 cut(s)	386, 478, 505
Bme1390I	CCNGG	3 cut(s)	87, 411, 1487
BmiI	GGNNCC	2 cut(s)	418, 1483
BmrFI	CCNGG	3 cut(s)	87, 411, 1487
BpiI	GAAGAC	2 cut(s)	73, 1643
BpmI	CTGGAG	1 cut(s)	1149
Bpu1102I	GCTNAGC	1 cut(s)	1115
BpuEI	CTTGAG	2 cut(s)	956, 1418
BsaBI	GATNNNNATC	2 cut(s)	1308, 1404
BsaJI	CCNNGG	2 cut(s)	85, 1485
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 690
Bse1I	ACTGG	1 cut(s)	242
Bse3DI	GCAATG	3 cut(s)	483, 684, 1373
Bse8I	GATNNNNATC	2 cut(s)	1308, 1404
BseBI	CCWGG	3 cut(s)	87, 411, 1487
BseDI	CCNNGG	2 cut(s)	85, 1485
BseGI	GGATG	6 cut(s)	188, 827, 888, 1336, 1685, 1689
BseJI	GATNNNNATC	2 cut(s)	1308, 1404
BseLI	CCNNNNNNNGG	2 cut(s)	107, 690
BseMI	GCAATG	3 cut(s)	483, 684, 1373
BseMII	CTCAG	5 cut(s)	552, 720, 999, 1106, 1655
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	1052
BseXI	GCAGC	3 cut(s)	396, 463, 490
BseYI	CCCAGC	1 cut(s)	1081
BsgI	GTGCAG	3 cut(s)	123, 489, 685
Bsh1236I	CGCG	1 cut(s)	1518
BshFI	GGCC	2 cut(s)	100, 698
BsiHKAI	GWGCWC	1 cut(s)	1165
BslFI	GGGAC	1 cut(s)	1251
BslI	CCNNNNNNNGG	2 cut(s)	107, 690
BsmAI	GTCTC	2 cut(s)	2, 1721
BsmFI	GGGAC	1 cut(s)	1251
BsnI	GGCC	2 cut(s)	100, 698
Bsp1286I	GDGCHC	1 cut(s)	1165
Bsp143I	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
Bsp1720I	GCTNAGC	1 cut(s)	1115
BspANI	GGCC	2 cut(s)	100, 698
BspCNI	CTCAG	5 cut(s)	553, 721, 1000, 1107, 1654
BspFNI	CGCG	1 cut(s)	1518
BspHI	TCATGA	2 cut(s)	321, 1089
BspLI	GGNNCC	2 cut(s)	418, 1483
BspPI	GGATC	6 cut(s)	853, 910, 1158, 1476, 1489, 1624
BspTI	CTTAAG	1 cut(s)	1076
BsrDI	GCAATG	3 cut(s)	483, 684, 1373
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	85, 1485
BssMI	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
Bst2UI	CCWGG	3 cut(s)	87, 411, 1487
Bst4CI	ACNGT	5 cut(s)	146, 747, 1345, 1503, 1566
BstAFI	CTTAAG	1 cut(s)	1076
BstC8I	GCNNGC	7 cut(s)	102, 199, 700, 936, 1121, 1516, 1520
BstDEI	CTNAG	8 cut(s)	561, 729, 833, 927, 995, 1008, 1115, 1641
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	6 cut(s)	188, 827, 888, 1336, 1685, 1689
BstFNI	CGCG	1 cut(s)	1518
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	9 cut(s)	273, 469, 844, 861, 905, 1153, 1171, 1484, 1619
BstMAI	GTCTC	2 cut(s)	2, 1721
BstMBI	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 695, 1120
BstNI	CCWGG	3 cut(s)	87, 411, 1487
BstNSI	RCATGY	3 cut(s)	1123, 1429, 1526
BstSCI	CCNGG	3 cut(s)	85, 409, 1485
BstSFI	CTRYAG	3 cut(s)	216, 1032, 1251
BstUI	CGCG	1 cut(s)	1518
BstV1I	GCAGC	3 cut(s)	396, 463, 490
BstV2I	GAAGAC	2 cut(s)	73, 1643
BstX2I	RGATCY	2 cut(s)	1168, 1481
BstYI	RGATCY	2 cut(s)	1168, 1481
BsuRI	GGCC	2 cut(s)	100, 698
BtsCI	GGATG	6 cut(s)	188, 827, 888, 1336, 1685, 1689
BtsIMutI	CAGTG	2 cut(s)	235, 752
Cac8I	GCNNGC	7 cut(s)	102, 199, 700, 936, 1121, 1516, 1520
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	2 cut(s)	321, 1089
CfoI	GCGC	1 cut(s)	677
CseI	GACGC	3 cut(s)	166, 374, 1394
Csp6I	GTAC	2 cut(s)	1025, 1429
CviQI	GTAC	2 cut(s)	1025, 1429
DdeI	CTNAG	8 cut(s)	561, 729, 833, 927, 995, 1008, 1115, 1641
DpnI	GATC	9 cut(s)	272, 468, 843, 860, 904, 1152, 1170, 1483, 1618
DpnII	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
DraI	TTTAAA	1 cut(s)	658
Eco147I	AGGCCT	2 cut(s)	100, 698
Eco32I	GATATC	1 cut(s)	552
Eco57I	CTGAAG	1 cut(s)	1571
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	1042
EcoRII	CCWGG	3 cut(s)	85, 409, 1485
EcoRV	GATATC	1 cut(s)	552
FaqI	GGGAC	1 cut(s)	1251
FauNDI	CATATG	1 cut(s)	978
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	385, 477, 504
FokI	GGATG	6 cut(s)	175, 814, 895, 1343, 1692, 1696
Fsp4HI	GCNGC	3 cut(s)	385, 477, 504
FspBI	CTAG	3 cut(s)	347, 1319, 1446
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	3 cut(s)	385, 477, 504
GsaI	CCCAGC	1 cut(s)	1085
GsuI	CTGGAG	1 cut(s)	1149
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	100, 698
HgaI	GACGC	3 cut(s)	166, 374, 1394
HhaI	GCGC	1 cut(s)	677
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	1660
HindII	GTYRAC	1 cut(s)	1660
HindIII	AAGCTT	1 cut(s)	1772
HinfI	GANTC	8 cut(s)	10, 287, 629, 942, 1134, 1471, 1639, 1656
HphI	GGTGA	2 cut(s)	177, 1357
Hpy166II	GTNNAC	2 cut(s)	332, 1660
Hpy188I	TCNGA	4 cut(s)	549, 730, 1108, 1655
Hpy188III	TCNNGA	8 cut(s)	28, 247, 313, 322, 355, 1090, 1166, 1577
Hpy8I	GTNNAC	2 cut(s)	332, 1660
HpyAV	CCTTC	6 cut(s)	454, 533, 688, 1287, 1583, 1690
HpyCH4III	ACNGT	5 cut(s)	146, 747, 1345, 1503, 1566
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 695, 1120
HpyF3I	CTNAG	8 cut(s)	561, 729, 833, 927, 995, 1008, 1115, 1641
HpySE526I	ACGT	1 cut(s)	708
HspAI	GCGC	1 cut(s)	675
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
LmnI	GCTCC	3 cut(s)	315, 493, 1168
Lsp1109I	GCAGC	3 cut(s)	396, 463, 490
MaeI	CTAG	3 cut(s)	347, 1319, 1446
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	5 cut(s)	183, 362, 1000, 1048, 1503
MalI	GATC	9 cut(s)	272, 468, 843, 860, 904, 1152, 1170, 1483, 1618
MboI	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
MfeI	CAATTG	1 cut(s)	1647
MflI	RGATCY	2 cut(s)	1168, 1481
MhlI	GDGCHC	1 cut(s)	1165
MlyI	GAGTC	4 cut(s)	4, 1480, 1633, 1665
MmeI	TCCRAC	4 cut(s)	262, 437, 1128, 1270
MnlI	CCTC	9 cut(s)	156, 520, 556, 980, 1030, 1184, 1442, 1714, 1728
MroXI	GAANNNNTTC	3 cut(s)	35, 946, 1352
MseI	TTAA	9 cut(s)	657, 711, 782, 1020, 1077, 1142, 1179, 1451, 1769
MslI	CAYNNNNRTG	3 cut(s)	110, 854, 1424
MspA1I	CMGCKG	2 cut(s)	476, 1007
MspCI	CTTAAG	1 cut(s)	1076
MspR9I	CCNGG	3 cut(s)	87, 411, 1487
MunI	CAATTG	1 cut(s)	1647
MvaI	CCWGG	3 cut(s)	87, 411, 1487
MvnI	CGCG	1 cut(s)	1518
MwoI	GCNNNNNNNGC	3 cut(s)	485, 695, 1120
NdeI	CATATG	1 cut(s)	978
NdeII	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
NlaIV	GGNNCC	2 cut(s)	418, 1483
NmuCI	GTSAC	3 cut(s)	183, 362, 1503
NspI	RCATGY	3 cut(s)	1123, 1429, 1526
PaeI	GCATGC	1 cut(s)	1123
PagI	TCATGA	2 cut(s)	321, 1089
PceI	AGGCCT	2 cut(s)	100, 698
PciI	ACATGT	1 cut(s)	1425
PdmI	GAANNNNTTC	3 cut(s)	35, 946, 1352
PfeI	GAWTC	4 cut(s)	287, 629, 942, 1134
PflFI	GACNNNGTC	1 cut(s)	1597
PflMI	CCANNNNNTGG	1 cut(s)	690
PkrI	GCNGC	3 cut(s)	386, 478, 505
PleI	GAGTC	4 cut(s)	4, 1479, 1633, 1664
PpsI	GAGTC	4 cut(s)	4, 1479, 1633, 1664
PscI	ACATGT	1 cut(s)	1425
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	3 cut(s)	85, 409, 1485
PspFI	CCCAGC	1 cut(s)	1081
PspGI	CCWGG	3 cut(s)	85, 409, 1485
PspN4I	GGNNCC	2 cut(s)	418, 1483
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	1168, 1481
PsyI	GACNNNGTC	1 cut(s)	1597
PvuII	CAGCTG	2 cut(s)	476, 1007
RsaI	GTAC	2 cut(s)	1026, 1430
RsaNI	GTAC	2 cut(s)	1025, 1429
RseI	CAYNNNNRTG	3 cut(s)	110, 854, 1424
SaqAI	TTAA	9 cut(s)	657, 711, 782, 1020, 1077, 1142, 1179, 1451, 1769
SatI	GCNGC	3 cut(s)	385, 477, 504
Sau3AI	GATC	9 cut(s)	270, 466, 841, 858, 902, 1150, 1168, 1481, 1616
SchI	GAGTC	4 cut(s)	4, 1480, 1633, 1665
ScrFI	CCNGG	3 cut(s)	87, 411, 1487
SduI	GDGCHC	1 cut(s)	1165
SfcI	CTRYAG	3 cut(s)	216, 1032, 1251
SmiMI	CAYNNNNRTG	3 cut(s)	110, 854, 1424
SmlI	CTYRAG	3 cut(s)	971, 1076, 1433
SmoI	CTYRAG	3 cut(s)	971, 1076, 1433
SpeI	ACTAGT	1 cut(s)	346
SphI	GCATGC	1 cut(s)	1123
SseBI	AGGCCT	2 cut(s)	100, 698
SspMI	CTAG	3 cut(s)	347, 1319, 1446
StuI	AGGCCT	2 cut(s)	100, 698
StyD4I	CCNGG	3 cut(s)	85, 409, 1485
TaaI	ACNGT	5 cut(s)	146, 747, 1345, 1503, 1566
TaiI	ACGT	1 cut(s)	711
TfiI	GAWTC	4 cut(s)	287, 629, 942, 1134
Tru1I	TTAA	9 cut(s)	657, 711, 782, 1020, 1077, 1142, 1179, 1451, 1769
Tru9I	TTAA	9 cut(s)	657, 711, 782, 1020, 1077, 1142, 1179, 1451, 1769
TscAI	CASTG	2 cut(s)	242, 752
TseFI	GTSAC	3 cut(s)	183, 362, 1503
TseI	GCWGC	3 cut(s)	384, 476, 503
Tsp45I	GTSAC	3 cut(s)	183, 362, 1503
TspRI	CASTG	2 cut(s)	242, 752
Tth111I	GACNNNGTC	1 cut(s)	1597
Van91I	CCANNNNNTGG	1 cut(s)	690
Vha464I	CTTAAG	1 cut(s)	1076
XagI	CCTNNNNNAGG	1 cut(s)	105
XapI	RAATTY	3 cut(s)	390, 1042, 1102
XceI	RCATGY	3 cut(s)	1123, 1429, 1526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmnI	GAANNNNTTC	3 cut(s)	35, 946, 1352
XspI	CTAG	3 cut(s)	347, 1319, 1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.