Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036936.1

Orthogroup ID

OG0012634

Physical Location & Seq

Genomic Coordinates Forward (+)

637 .. 2533

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036936.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

atgtttaagccgtctgtcttctctcgaaattacaagcctgacacttcaggtaggaaaatcgttgatagagaaccacttgttcagggtttagtacctggtggagggtgtaaccaatgtgtcatttgtctggtgaattcctgcatggttgccgaaactatagacaaaaggaatcagaactggtttgtacgggccaaagttgcaaatgatttgatcatacaagttggagattccagctttcacttgcacaagctccctatggtcatgagaagtggatacttgaacagactagtattcaagacgagtaatgttgagagaggtacctgcctcaaaatcagcatagacaatcttccaggtggaaacaaaatttttgagttagtagtcaagttttgttatggtcggaaggttgatctaacagctgacaatatcgctccactgtattgtgttgcacatttcttggaaatgagtgatgatcttgaagaaggaaatctcatgtccaaaactgaggaatttctaagctttttgatattttcatcatggaaagacactttccagattttgaaaagctgtgaatccatttcctcctgggcaaaagattataaaatcacaaaacgaagctcagaagccattgcttggaaggcctgcacaaacctcaaggcatttagtcatgaagatgaagatatgcagtgctttagggttctgccaaattgtgtagggaagtcgaaagttgaagatgcacttgacaattggtggtttgaagatgtttcatccctacgagtagatcatttcatcgaagtggttcaatccctaaaatgtaaagggatgagagcagaccttgttggatcatgtatggctcattggactgttaaatggctttcaagaatctcctctggacttgaaagtatgacccccaagcatatgacccgccaatacgtaagagttacaaccgagtgcttgattaagatactgcccgcagaggagaagtcagttacttgtaattttatacttcaccttctgaagattgggttcgtgacaaaaataaactctgatttactgaatctgcttgaaagaagaatagctttcatgttggatcaatgtcgtcctctagatctcttggttaggaactatggagataaagatagtgtctatgatgtgaatcttgttataagagtggtaatggcttatgtttctattgtttcaaaaagtcccacaccaaaaatgtttgctgttggaaggttggtggatgggtatcttacactggttgcaagggatgagaaccttaagatgaatattttccagtcacttgtagaagcattgcctagagatgctcgtttttgcggcggcaatctctatagagccattgacatgtacctcaaggtatgtgttctttttcttcttctagtttctagagataatgtatctcatgacatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

476

Amino Acids

54.18

Weight (kDa)

8.53

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05590 FvH4_6g05590 FvH4_6g05590
malus_domestica	MD04G1207200.v1.1 MD17G1055000.v1.1
prunus_persica	Prupe.6G328100_v2.0.a1
pyrus_communis	pycom04g18330
rosa_chinensis	RchiOBHm_Chr3g0454371
rosa_laevigata	RLG00000025449 RLG00000025456
rosa_multiflora	Rmu_sc0036936.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437190 Rroxscaffold_6G00425160
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700
rosa_wichuraiana	Rw3G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 1163
Acc36I	ACCTGC	1 cut(s)	329
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	4 cut(s)	922, 969, 1335, 1338
AclWI	GGATC	2 cut(s)	847, 1095
AcsI	RAATTY	3 cut(s)	133, 363, 506
AcuI	CTGAAG	2 cut(s)	30, 1034
AfaI	GTAC	4 cut(s)	93, 186, 319, 1367
AfiI	CCNNNNNNNGG	2 cut(s)	101, 630
AflII	CTTAAG	1 cut(s)	1277
AflIII	ACRYGT	1 cut(s)	1362
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	3 cut(s)	94, 349, 581
AluBI	AGCT	7 cut(s)	234, 250, 416, 516, 564, 615, 1076
AluI	AGCT	7 cut(s)	234, 250, 416, 516, 564, 615, 1076
AlwI	GGATC	2 cut(s)	847, 1095
AoxI	GGCC	2 cut(s)	189, 636
ApoI	RAATTY	3 cut(s)	133, 363, 506
Asp700I	GAANNNNTTC	2 cut(s)	795, 1289
Asp718I	GGTACC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	142, 998
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	10
BccI	CCATC	1 cut(s)	1235
BciT130I	CCWGG	3 cut(s)	96, 351, 583
BciVI	GTATCC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	5 cut(s)	287, 1103, 1317, 1397, 1404
BfmI	CTRYAG	2 cut(s)	156, 1348
BfrI	CTTAAG	1 cut(s)	1277
BfuAI	ACCTGC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	266
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	2 cut(s)	1336, 1339
BlsI	GCNGC	2 cut(s)	1337, 1340
Bme1390I	CCNGG	3 cut(s)	96, 351, 583
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	3 cut(s)	96, 351, 583
BmsI	GCATC	2 cut(s)	721, 1312
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	635, 1355
BsaAI	YACGTR	1 cut(s)	931
BsaBI	GATNNNNATC	2 cut(s)	1152, 1245
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 630
Bse1I	ACTGG	3 cut(s)	182, 1260, 1294
Bse3DI	GCAATG	2 cut(s)	624, 1310
Bse8I	GATNNNNATC	2 cut(s)	1152, 1245
BseBI	CCWGG	3 cut(s)	96, 351, 583
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	4 cut(s)	764, 825, 1246, 1273
BseJI	GATNNNNATC	2 cut(s)	1152, 1245
BseLI	CCNNNNNNNGG	2 cut(s)	101, 630
BseMI	GCAATG	2 cut(s)	624, 1310
BseMII	CTCAG	2 cut(s)	492, 630
BseNI	ACTGG	3 cut(s)	182, 1260, 1294
BseRI	GAGGAG	2 cut(s)	874, 989
BsgI	GTGCAG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	191, 638
BshNI	GGYRCC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	1188
BslI	CCNNNNNNNGG	2 cut(s)	101, 630
BsmFI	GGGAC	1 cut(s)	1188
BsnI	GGCC	2 cut(s)	191, 638
Bsp143I	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
BspACI	CCGC	4 cut(s)	922, 969, 1335, 1338
BspANI	GGCC	2 cut(s)	191, 638
BspCNI	CTCAG	2 cut(s)	493, 629
BspHI	TCATGA	3 cut(s)	261, 664, 1420
BspLI	GGNNCC	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	847, 1095
BspT107I	GGYRCC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	1277
BsrDI	GCAATG	2 cut(s)	624, 1310
BsrI	ACTGG	3 cut(s)	182, 1260, 1294
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
Bst2UI	CCWGG	3 cut(s)	96, 351, 583
Bst4CI	ACNGT	2 cut(s)	435, 862
BstAFI	CTTAAG	1 cut(s)	1277
BstBAI	YACGTR	1 cut(s)	931
BstC8I	GCNNGC	2 cut(s)	640, 969
BstDEI	CTNAG	3 cut(s)	501, 512, 616
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	764, 825, 1246, 1273
BstKTI	GATC	7 cut(s)	213, 409, 472, 781, 842, 1090, 1108
BstMBI	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 635
BstNI	CCWGG	3 cut(s)	96, 351, 583
BstNSI	RCATGY	1 cut(s)	1366
BstSCI	CCNGG	3 cut(s)	94, 349, 581
BstSFI	CTRYAG	2 cut(s)	156, 1348
BstSNI	TACGTA	1 cut(s)	931
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	1105
BstYI	RGATCY	1 cut(s)	1105
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	191, 638
BtsCI	GGATG	4 cut(s)	764, 825, 1246, 1273
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	3 cut(s)	431, 689, 1253
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	640, 969
CciI	TCATGA	3 cut(s)	261, 664, 1420
Cfr13I	GGNCC	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	4 cut(s)	92, 185, 318, 1366
CviAII	CATG	9 cut(s)	142, 262, 490, 534, 665, 843, 1081, 1363, 1421
CviQI	GTAC	4 cut(s)	92, 185, 318, 1366
DdeI	CTNAG	3 cut(s)	501, 512, 616
DpnI	GATC	7 cut(s)	212, 408, 471, 780, 841, 1089, 1107
DpnII	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
Eco105I	TACGTA	1 cut(s)	931
Eco147I	AGGCCT	1 cut(s)	638
Eco57I	CTGAAG	2 cut(s)	30, 1034
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	94, 349, 581
FaeI	CATG	9 cut(s)	145, 265, 493, 537, 668, 846, 1084, 1366, 1424
FalI	AAGNNNNNCTT	4 cut(s)	720, 752, 1060, 1092
FaqI	GGGAC	1 cut(s)	1188
FatI	CATG	9 cut(s)	141, 261, 489, 533, 664, 842, 1080, 1362, 1420
FauI	CCCGC	2 cut(s)	929, 976
FauNDI	CATATG	1 cut(s)	915
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	1336, 1339
FokI	GGATG	4 cut(s)	751, 832, 1253, 1280
Fsp4HI	GCNGC	2 cut(s)	1336, 1339
FspBI	CTAG	5 cut(s)	287, 1103, 1317, 1397, 1404
GluI	GCNGC	2 cut(s)	1336, 1339
HaeIII	GGCC	2 cut(s)	191, 638
Hin1II	CATG	9 cut(s)	145, 265, 493, 537, 668, 846, 1084, 1366, 1424
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	6 cut(s)	169, 227, 569, 879, 1054, 1153
HphI	GGTGA	2 cut(s)	142, 998
Hpy188I	TCNGA	5 cut(s)	174, 399, 619, 1014, 1045
HpyAV	CCTTC	5 cut(s)	394, 473, 628, 1019, 1224
HpyCH4III	ACNGT	2 cut(s)	435, 862
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	8 cut(s)	141, 200, 244, 446, 642, 682, 734, 1262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 635
HpyF3I	CTNAG	3 cut(s)	501, 512, 616
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	9 cut(s)	145, 265, 493, 537, 668, 846, 1084, 1366, 1424
KpnI	GGTACC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
LmnI	GCTCC	2 cut(s)	255, 433
LweI	GCATC	2 cut(s)	721, 1312
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	5 cut(s)	287, 1103, 1317, 1397, 1404
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	5 cut(s)	107, 937, 985, 1027, 1296
MalI	GATC	7 cut(s)	212, 408, 471, 780, 841, 1089, 1107
MboI	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
MfeI	CAATTG	1 cut(s)	742
MflI	RGATCY	1 cut(s)	1105
MluCI	AATT	7 cut(s)	28, 133, 363, 506, 703, 742, 994
MmeI	TCCRAC	5 cut(s)	202, 377, 817, 1065, 1207
MroXI	GAANNNNTTC	2 cut(s)	795, 1289
MseI	TTAA	4 cut(s)	6, 864, 957, 1278
MslI	CAYNNNNRTG	3 cut(s)	669, 791, 1361
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	1277
MspR9I	CCNGG	3 cut(s)	96, 351, 583
MunI	CAATTG	1 cut(s)	742
MvaI	CCWGG	3 cut(s)	96, 351, 583
MwoI	GCNNNNNNNGC	2 cut(s)	197, 635
NdeI	CATATG	1 cut(s)	915
NdeII	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
NlaIII	CATG	9 cut(s)	145, 265, 493, 537, 668, 846, 1084, 1366, 1424
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	1027, 1296
NspI	RCATGY	1 cut(s)	1366
PagI	TCATGA	3 cut(s)	261, 664, 1420
PceI	AGGCCT	1 cut(s)	638
PciI	ACATGT	1 cut(s)	1362
PdmI	GAANNNNTTC	2 cut(s)	795, 1289
PfeI	GAWTC	6 cut(s)	169, 227, 569, 879, 1054, 1153
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	2 cut(s)	1337, 1340
Ppu21I	YACGTR	1 cut(s)	931
PscI	ACATGT	1 cut(s)	1362
PsiI	TTATAA	2 cut(s)	597, 1163
Psp6I	CCWGG	3 cut(s)	94, 349, 581
PspGI	CCWGG	3 cut(s)	94, 349, 581
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	1105
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	4 cut(s)	93, 186, 319, 1367
RsaNI	GTAC	4 cut(s)	92, 185, 318, 1366
RseI	CAYNNNNRTG	3 cut(s)	669, 791, 1361
SaqAI	TTAA	4 cut(s)	6, 864, 957, 1278
SatI	GCNGC	2 cut(s)	1336, 1339
Sau3AI	GATC	7 cut(s)	210, 406, 469, 778, 839, 1087, 1105
Sau96I	GGNCC	1 cut(s)	189
ScrFI	CCNGG	3 cut(s)	96, 351, 583
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	721, 1312
SfcI	CTRYAG	2 cut(s)	156, 1348
SmiMI	CAYNNNNRTG	3 cut(s)	669, 791, 1361
SmlI	CTYRAG	3 cut(s)	650, 1277, 1370
SmoI	CTYRAG	3 cut(s)	650, 1277, 1370
SnaBI	TACGTA	1 cut(s)	931
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	7 cut(s)	28, 133, 363, 506, 703, 742, 994
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	4 cut(s)	922, 969, 1335, 1338
SspI	AATATT	1 cut(s)	1288
SspMI	CTAG	5 cut(s)	287, 1103, 1317, 1397, 1404
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	94, 349, 581
TaaI	ACNGT	2 cut(s)	435, 862
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	3 cut(s)	25, 719, 789
TasI	AATT	7 cut(s)	28, 133, 363, 506, 703, 742, 994
TauI	GCSGC	2 cut(s)	1338, 1341
TfiI	GAWTC	6 cut(s)	169, 227, 569, 879, 1054, 1153
Tru1I	TTAA	4 cut(s)	6, 864, 957, 1278
Tru9I	TTAA	4 cut(s)	6, 864, 957, 1278
TscAI	CASTG	3 cut(s)	438, 689, 1260
TseFI	GTSAC	2 cut(s)	1027, 1296
Tsp45I	GTSAC	2 cut(s)	1027, 1296
TspDTI	ATGAA	7 cut(s)	519, 681, 687, 753, 775, 1069, 1298
TspRI	CASTG	3 cut(s)	438, 689, 1260
Van91I	CCANNNNNTGG	1 cut(s)	630
Vha464I	CTTAAG	1 cut(s)	1277
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	3 cut(s)	133, 363, 506
XbaI	TCTAGA	2 cut(s)	1102, 1403
XceI	RCATGY	1 cut(s)	1366
XmnI	GAANNNNTTC	2 cut(s)	795, 1289
XspI	CTAG	5 cut(s)	287, 1103, 1317, 1397, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.