Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012634

Physical Location & Seq

Genomic Coordinates Forward (+)

4303538 .. 4304344

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1055000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTAAAGCTGGAAAATGGGTGTAGTGTTTCAGTGGCAAATGATTTGATCATACAAGTTGGAGACTCCAACTTTTACTTGCACAAGCTTCCGATGGTCATGAGAAGGGGTTACTTGAATCGACTAGTATTCCAGAGAATTAATGTAGGGAGAGATGCCAGCCCCAGAATCCATCTTGACAATCTTCCACGCGGAGCAAAAGTTTTCGAATCTGTAGTTAAGTTCTGTTATGGTTGGAAGTTTGATCTAATCAACATAGCTCCGCTATATTGCGCTGCACATTTCTTGGAAATGAGTGATGATTTCAAACAAGGAAATCTGATTTCCAAAACCGAGACCTTTTTGAGTTTTTTGATTTTTCCTTCTTGGAAAAACACCTTCCGGATTTTGAGAAGCTGTGAATCGATTTCTTTGTGCGCTAAGGAGTTGAAAATCTCCAAACGGAGCACGGAAGCCATTGCTTGGAAGGCTTGTACAAACCTTAATGCATGTAGTTCTGAAACTGATGAAATACAATGCTTCAATGTTCTGCCAAACAATGCAGAGAACTCGAGGCTTCAAGGTGCAGCTGACATTTGGTGGTTTGAAGATGTCTCGTTCCTTCGAATAAATCATTTCATCGAAGTGATCCAAGCCTTAAATTGGAAAGGATCATGTATAGCCCATTGGACTGCAAAATGGCTCTCGCGAGTCACCTCAAGACTTGAAAGAATGTCCCTGAAGCATATGACACATCAGTTTCTAGGAGTTACAACCGAGTGCTTGGTTAAGGATGTAGTAGATGGGGCTATTTGTTCGAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

269

Amino Acids

30.67

Weight (kDa)

8.74

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05590 FvH4_6g05590 FvH4_6g05590
malus_domestica	MD04G1207200.v1.1 MD17G1055000.v1.1
prunus_persica	Prupe.6G328100_v2.0.a1
pyrus_communis	pycom04g18330
rosa_chinensis	RchiOBHm_Chr3g0454371
rosa_laevigata	RLG00000025449 RLG00000025456
rosa_multiflora	Rmu_sc0036936.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437190 Rroxscaffold_6G00425160
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700
rosa_wichuraiana	Rw3G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccII	CGCG	2 cut(s)	192, 688
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	2 cut(s)	192, 263
AclWI	GGATC	2 cut(s)	622, 658
AcuI	CTGAAG	1 cut(s)	740
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	462, 642
AgsI	TTSAA	7 cut(s)	118, 307, 430, 523, 560, 587, 707
AhlI	ACTAGT	1 cut(s)	124
AluBI	AGCT	5 cut(s)	10, 88, 260, 396, 569
AluI	AGCT	5 cut(s)	10, 88, 260, 396, 569
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	3 cut(s)	57, 329, 598
AlwI	GGATC	2 cut(s)	622, 658
Ama87I	CYCGRG	1 cut(s)	550
Aor13HI	TCCGGA	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	275, 566
AseI	ATTAAT	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	275, 419
AsuHPI	GGTGA	1 cut(s)	685
AsuII	TTCGAA	3 cut(s)	207, 604, 797
AvaI	CYCGRG	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	262, 578
BccI	CCATC	3 cut(s)	88, 180, 776
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	3 cut(s)	57, 329, 598
BcuI	ACTAGT	1 cut(s)	124
BfaI	CTAG	2 cut(s)	125, 743
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	276, 567
BlsI	GCNGC	2 cut(s)	277, 568
BmeT110I	CYCGRG	1 cut(s)	550
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	3 cut(s)	207, 604, 797
BpuEI	CTTGAG	1 cut(s)	682
Bsa29I	ATCGAT	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 642
Bse3DI	GCAATG	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	381
BseCI	ATCGAT	1 cut(s)	404
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	2 cut(s)	462, 642
BseMI	GCAATG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	262, 578
BsgI	GTGCAG	2 cut(s)	261, 585
Bsh1236I	CGCG	2 cut(s)	192, 688
BshVI	ATCGAT	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	2 cut(s)	462, 642
BsmAI	GTCTC	3 cut(s)	57, 329, 598
BsmFI	GGGAC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	550
Bsp119I	TTCGAA	3 cut(s)	207, 604, 797
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp13I	TCCGGA	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	48, 244, 627, 650
Bsp68I	TCGCGA	1 cut(s)	688
BspACI	CCGC	2 cut(s)	192, 263
BspDI	ATCGAT	1 cut(s)	404
BspEI	TCCGGA	1 cut(s)	381
BspFNI	CGCG	2 cut(s)	192, 688
BspHI	TCATGA	1 cut(s)	99
BspPI	GGATC	2 cut(s)	622, 658
BspT104I	TTCGAA	3 cut(s)	207, 604, 797
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	473
BssMI	GATC	4 cut(s)	48, 244, 627, 650
BstAUI	TGTACA	1 cut(s)	473
BstBI	TTCGAA	3 cut(s)	207, 604, 797
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	2 cut(s)	192, 688
BstHHI	GCGC	2 cut(s)	275, 419
BstKTI	GATC	4 cut(s)	51, 247, 630, 653
BstMAI	GTCTC	3 cut(s)	57, 329, 598
BstMBI	GATC	4 cut(s)	48, 244, 627, 650
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	192, 688
BstV1I	GCAGC	2 cut(s)	262, 578
Bsu15I	ATCGAT	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	39
BtuMI	TCGCGA	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	2 cut(s)	275, 419
ClaI	ATCGAT	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	3 cut(s)	100, 489, 654
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	4 cut(s)	50, 246, 629, 652
DpnII	GATC	4 cut(s)	48, 244, 627, 650
Eco31I	GGTCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	740
Eco88I	CYCGRG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	490
FaeI	CATG	3 cut(s)	103, 492, 657
FaqI	GGGAC	1 cut(s)	700
FatI	CATG	3 cut(s)	99, 488, 653
FauNDI	CATATG	1 cut(s)	726
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	276, 567
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	2 cut(s)	276, 567
FspBI	CTAG	2 cut(s)	125, 743
GlaI	GCGC	2 cut(s)	274, 418
GluI	GCNGC	2 cut(s)	276, 567
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	2 cut(s)	275, 419
Hin1II	CATG	3 cut(s)	103, 492, 657
Hin6I	GCGC	2 cut(s)	273, 417
HinP1I	GCGC	2 cut(s)	273, 417
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	6 cut(s)	65, 118, 168, 209, 401, 690
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	1 cut(s)	685
Hpy188I	TCNGA	3 cut(s)	93, 321, 499
Hpy188III	TCNNGA	6 cut(s)	100, 133, 176, 382, 687, 699
HpyAV	CCTTC	5 cut(s)	99, 372, 388, 460, 611
HpyCH4V	TGCA	6 cut(s)	82, 278, 488, 542, 566, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	103, 492, 657
HspAI	GCGC	2 cut(s)	273, 417
Kpn2I	TCCGGA	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 244, 627, 650
LmnI	GCTCC	3 cut(s)	194, 265, 444
LpnPI	CCDG	5 cut(s)	146, 172, 178, 395, 731
Lsp1109I	GCAGC	2 cut(s)	262, 578
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	125, 743
MaeIII	GTNAC	3 cut(s)	110, 691, 748
MalI	GATC	4 cut(s)	50, 246, 629, 652
MboI	GATC	4 cut(s)	48, 244, 627, 650
MboII	GAAGA	2 cut(s)	176, 599
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	3 cut(s)	138, 640, 800
MlyI	GAGTC	2 cut(s)	59, 699
MmeI	TCCRAC	3 cut(s)	40, 93, 215
MnlI	CCTC	2 cut(s)	546, 706
Mph1103I	ATGCAT	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	381
MseI	TTAA	5 cut(s)	141, 219, 483, 638, 768
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	192, 688
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeI	CATATG	1 cut(s)	726
NdeII	GATC	4 cut(s)	48, 244, 627, 650
NlaIII	CATG	3 cut(s)	103, 492, 657
NmuCI	GTSAC	1 cut(s)	691
NruI	TCGCGA	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	3 cut(s)	207, 604, 797
PaeR7I	CTCGAG	1 cut(s)	550
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	4 cut(s)	118, 168, 209, 401
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	2 cut(s)	277, 568
PleI	GAGTC	2 cut(s)	59, 698
PpsI	GAGTC	2 cut(s)	59, 698
PshBI	ATTAAT	1 cut(s)	141
PspXI	VCTCGAGB	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	569
RruI	TCGCGA	1 cut(s)	688
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	141, 219, 483, 638, 768
SatI	GCNGC	2 cut(s)	276, 567
Sau3AI	GATC	4 cut(s)	48, 244, 627, 650
SchI	GAGTC	2 cut(s)	59, 699
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	550
SfuI	TTCGAA	3 cut(s)	207, 604, 797
SlaI	CTCGAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	550, 697
SmoI	CTYRAG	2 cut(s)	550, 697
SpeI	ACTAGT	1 cut(s)	124
Sse9I	AATT	3 cut(s)	138, 640, 800
SsiI	CCGC	2 cut(s)	192, 263
SspMI	CTAG	2 cut(s)	125, 743
TaqI	TCGA	7 cut(s)	121, 207, 404, 551, 604, 621, 797
TasI	AATT	3 cut(s)	138, 640, 800
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	4 cut(s)	118, 168, 209, 401
Tru1I	TTAA	5 cut(s)	141, 219, 483, 638, 768
Tru9I	TTAA	5 cut(s)	141, 219, 483, 638, 768
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	2 cut(s)	275, 566
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	522, 607
TspGWI	ACGGA	2 cut(s)	457, 464
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	141
XceI	RCATGY	1 cut(s)	492
XhoI	CTCGAG	1 cut(s)	550
XspI	CTAG	2 cut(s)	125, 743
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.