Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g05590 FvH4_6g05590 FvH4_6g05590 |
| malus_domestica | MD04G1207200.v1.1 MD17G1055000.v1.1 |
| prunus_persica | Prupe.6G328100_v2.0.a1 |
| pyrus_communis | pycom04g18330 |
| rosa_chinensis | RchiOBHm_Chr3g0454371 |
| rosa_laevigata | RLG00000025449 RLG00000025456 |
| rosa_multiflora | Rmu_sc0036936.1_g000001 |
| rosa_roxburghii | Rroxscaffold_165G00437190 Rroxscaffold_6G00425160 |
| rosa_rugosa | Rorug02G0654500 |
| rosa_samantha | Rh3AG058500 Rh3BG060300 Rh3CG059300 Rh3DG060700 |
| rosa_wichuraiana | Rw3G004520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 675, 1241 |
| Acc36I | ACCTGC | 2 cut(s) | 246, 407 |
| Acc65I | GGTACC | 1 cut(s) | 395 |
| AccB1I | GGYRCC | 1 cut(s) | 395 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 708 |
| AccIII | TCCGGA | 1 cut(s) | 627 |
| AciI | CCGC | 2 cut(s) | 412, 1661 |
| AclWI | GGATC | 5 cut(s) | 925, 1173, 1491, 1504, 1639 |
| AcsI | RAATTY | 4 cut(s) | 133, 441, 584, 1702 |
| AcuI | CTGAAG | 2 cut(s) | 30, 1112 |
| AfaI | GTAC | 5 cut(s) | 182, 264, 397, 1041, 1445 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 708 |
| AflII | CTTAAG | 2 cut(s) | 5, 1355 |
| AflIII | ACRYGT | 2 cut(s) | 1440, 1773 |
| AhlI | ACTAGT | 1 cut(s) | 364 |
| AjnI | CCWGG | 2 cut(s) | 427, 659 |
| Alw26I | GTCTC | 3 cut(s) | 196, 1507, 1736 |
| AlwI | GGATC | 5 cut(s) | 925, 1173, 1491, 1504, 1639 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1516 |
| Aor13HI | TCCGGA | 1 cut(s) | 627 |
| AoxI | GGCC | 1 cut(s) | 714 |
| ApeKI | GCWGC | 1 cut(s) | 521 |
| ApoI | RAATTY | 4 cut(s) | 133, 441, 584, 1702 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 873, 1367 |
| Asp718I | GGTACC | 1 cut(s) | 395 |
| AspLEI | GCGC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 1076 |
| BamHI | GGATCC | 1 cut(s) | 1496 |
| BanI | GGYRCC | 1 cut(s) | 395 |
| BauI | CACGAG | 1 cut(s) | 1530 |
| BbsI | GAAGAC | 1 cut(s) | 10 |
| BbvI | GCAGC | 1 cut(s) | 508 |
| BccI | CCATC | 2 cut(s) | 1313, 1689 |
| BciT130I | CCWGG | 2 cut(s) | 429, 661 |
| BciVI | GTATCC | 1 cut(s) | 344 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BcoDI | GTCTC | 3 cut(s) | 196, 1507, 1736 |
| BcuI | ACTAGT | 1 cut(s) | 364 |
| BfaI | CTAG | 6 cut(s) | 198, 222, 365, 1181, 1395, 1461 |
| BfmI | CTRYAG | 2 cut(s) | 1047, 1426 |
| BfrI | CTTAAG | 2 cut(s) | 5, 1355 |
| BfuAI | ACCTGC | 2 cut(s) | 246, 407 |
| BfuI | GTATCC | 1 cut(s) | 344 |
| BglII | AGATCT | 1 cut(s) | 1183 |
| BisI | GCNGC | 1 cut(s) | 522 |
| BlsI | GCNGC | 1 cut(s) | 523 |
| Bme1390I | CCNGG | 2 cut(s) | 429, 661 |
| BmiI | GGNNCC | 2 cut(s) | 397, 1498 |
| BmrFI | CCNGG | 2 cut(s) | 429, 661 |
| BmsI | GCATC | 2 cut(s) | 799, 1390 |
| BpiI | GAAGAC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 2 cut(s) | 713, 1433 |
| BsaAI | YACGTR | 1 cut(s) | 1009 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1230, 1323 |
| BsaJI | CCNNGG | 2 cut(s) | 660, 1500 |
| BsaWI | WCCGGW | 2 cut(s) | 127, 627 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 708 |
| Bse1I | ACTGG | 4 cut(s) | 182, 215, 1338, 1372 |
| Bse3DI | GCAATG | 2 cut(s) | 702, 1388 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1230, 1323 |
| BseAI | TCCGGA | 1 cut(s) | 627 |
| BseBI | CCWGG | 2 cut(s) | 429, 661 |
| BseDI | CCNNGG | 2 cut(s) | 660, 1500 |
| BseGI | GGATG | 7 cut(s) | 842, 903, 1324, 1351, 1700, 1704, 1814 |
| BseJI | GATNNNNATC | 2 cut(s) | 1230, 1323 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 708 |
| BseMI | GCAATG | 2 cut(s) | 702, 1388 |
| BseMII | CTCAG | 3 cut(s) | 570, 708, 1670 |
| BseNI | ACTGG | 4 cut(s) | 182, 215, 1338, 1372 |
| BseRI | GAGGAG | 2 cut(s) | 184, 1067 |
| BseXI | GCAGC | 1 cut(s) | 508 |
| BsgI | GTGCAG | 2 cut(s) | 507, 703 |
| BshFI | GGCC | 1 cut(s) | 716 |
| BshNI | GGYRCC | 1 cut(s) | 395 |
| BsiSI | CCGG | 2 cut(s) | 128, 628 |
| BslFI | GGGAC | 1 cut(s) | 1266 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 708 |
| BsmAI | GTCTC | 3 cut(s) | 196, 1507, 1736 |
| BsmFI | GGGAC | 1 cut(s) | 1266 |
| BsnI | GGCC | 1 cut(s) | 716 |
| Bsp13I | TCCGGA | 1 cut(s) | 627 |
| Bsp143I | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| BspACI | CCGC | 2 cut(s) | 412, 1661 |
| BspANI | GGCC | 1 cut(s) | 716 |
| BspCNI | CTCAG | 3 cut(s) | 571, 707, 1669 |
| BspEI | TCCGGA | 1 cut(s) | 627 |
| BspHI | TCATGA | 2 cut(s) | 339, 742 |
| BspLI | GGNNCC | 2 cut(s) | 397, 1498 |
| BspMAI | CTGCAG | 1 cut(s) | 1051 |
| BspMI | ACCTGC | 2 cut(s) | 246, 407 |
| BspPI | GGATC | 5 cut(s) | 925, 1173, 1491, 1504, 1639 |
| BspT107I | GGYRCC | 1 cut(s) | 395 |
| BspTI | CTTAAG | 2 cut(s) | 5, 1355 |
| BsrDI | GCAATG | 2 cut(s) | 702, 1388 |
| BsrI | ACTGG | 4 cut(s) | 182, 215, 1338, 1372 |
| BssECI | CCNNGG | 2 cut(s) | 660, 1500 |
| BssMI | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| BssSI | CACGAG | 1 cut(s) | 1530 |
| BssT1I | CCWWGG | 1 cut(s) | 1500 |
| Bst2BI | CACGAG | 1 cut(s) | 1530 |
| Bst2UI | CCWGG | 2 cut(s) | 429, 661 |
| Bst4CI | ACNGT | 5 cut(s) | 513, 940, 1296, 1518, 1581 |
| BstAFI | CTTAAG | 2 cut(s) | 5, 1355 |
| BstBAI | YACGTR | 1 cut(s) | 1009 |
| BstC8I | GCNNGC | 2 cut(s) | 718, 1047 |
| BstDEI | CTNAG | 4 cut(s) | 579, 590, 694, 1656 |
| BstF5I | GGATG | 7 cut(s) | 842, 903, 1324, 1351, 1700, 1704, 1814 |
| BstHHI | GCGC | 1 cut(s) | 229 |
| BstKTI | GATC | 9 cut(s) | 291, 487, 859, 920, 1168, 1186, 1499, 1555, 1634 |
| BstMAI | GTCTC | 3 cut(s) | 196, 1507, 1736 |
| BstMBI | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 713 |
| BstNI | CCWGG | 2 cut(s) | 429, 661 |
| BstNSI | RCATGY | 2 cut(s) | 1444, 1777 |
| BstSCI | CCNGG | 2 cut(s) | 427, 659 |
| BstSFI | CTRYAG | 2 cut(s) | 1047, 1426 |
| BstSNI | TACGTA | 1 cut(s) | 1009 |
| BstV1I | GCAGC | 1 cut(s) | 508 |
| BstV2I | GAAGAC | 1 cut(s) | 10 |
| BstX2I | RGATCY | 3 cut(s) | 1183, 1496, 1631 |
| BstYI | RGATCY | 3 cut(s) | 1183, 1496, 1631 |
| BsuI | GTATCC | 1 cut(s) | 344 |
| BsuRI | GGCC | 1 cut(s) | 716 |
| BtsCI | GGATG | 7 cut(s) | 842, 903, 1324, 1351, 1700, 1704, 1814 |
| BtsI | GCAGTG | 1 cut(s) | 767 |
| BtsIMutI | CAGTG | 3 cut(s) | 509, 767, 1331 |
| BveI | ACCTGC | 2 cut(s) | 246, 407 |
| Cac8I | GCNNGC | 2 cut(s) | 718, 1047 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1516 |
| CciI | TCATGA | 2 cut(s) | 339, 742 |
| CfoI | GCGC | 1 cut(s) | 229 |
| Csp6I | GTAC | 5 cut(s) | 181, 263, 396, 1040, 1444 |
| CviAII | CATG | 9 cut(s) | 142, 340, 568, 612, 743, 921, 1159, 1441, 1774 |
| CviQI | GTAC | 5 cut(s) | 181, 263, 396, 1040, 1444 |
| DdeI | CTNAG | 4 cut(s) | 579, 590, 694, 1656 |
| DpnI | GATC | 9 cut(s) | 290, 486, 858, 919, 1167, 1185, 1498, 1554, 1633 |
| DpnII | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| Eco105I | TACGTA | 1 cut(s) | 1009 |
| Eco130I | CCWWGG | 1 cut(s) | 1500 |
| Eco147I | AGGCCT | 1 cut(s) | 716 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 1112 |
| EcoRI | GAATTC | 2 cut(s) | 133, 1702 |
| EcoRII | CCWGG | 2 cut(s) | 427, 659 |
| EcoT14I | CCWWGG | 1 cut(s) | 1500 |
| ErhI | CCWWGG | 1 cut(s) | 1500 |
| FaeI | CATG | 9 cut(s) | 145, 343, 571, 615, 746, 924, 1162, 1444, 1777 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 798, 830, 1138, 1170 |
| FaqI | GGGAC | 1 cut(s) | 1266 |
| FatI | CATG | 9 cut(s) | 141, 339, 567, 611, 742, 920, 1158, 1440, 1773 |
| FauNDI | CATATG | 1 cut(s) | 993 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 1 cut(s) | 522 |
| FokI | GGATG | 6 cut(s) | 829, 910, 1331, 1358, 1707, 1711 |
| Fsp4HI | GCNGC | 1 cut(s) | 522 |
| FspBI | CTAG | 6 cut(s) | 198, 222, 365, 1181, 1395, 1461 |
| GlaI | GCGC | 1 cut(s) | 228 |
| GluI | GCNGC | 1 cut(s) | 522 |
| HaeIII | GGCC | 1 cut(s) | 716 |
| HapII | CCGG | 2 cut(s) | 128, 628 |
| HhaI | GCGC | 1 cut(s) | 229 |
| Hin1II | CATG | 9 cut(s) | 145, 343, 571, 615, 746, 924, 1162, 1444, 1777 |
| Hin6I | GCGC | 1 cut(s) | 227 |
| HinP1I | GCGC | 1 cut(s) | 227 |
| HindIII | AAGCTT | 2 cut(s) | 592, 1787 |
| HinfI | GANTC | 7 cut(s) | 169, 305, 647, 1132, 1231, 1486, 1654 |
| HpaII | CCGG | 2 cut(s) | 128, 628 |
| HphI | GGTGA | 2 cut(s) | 142, 1076 |
| Hpy188I | TCNGA | 7 cut(s) | 174, 477, 697, 1092, 1123, 1512, 1522 |
| Hpy99I | CGWCG | 1 cut(s) | 1418 |
| HpyAV | CCTTC | 6 cut(s) | 472, 551, 706, 1097, 1302, 1705 |
| HpyCH4III | ACNGT | 5 cut(s) | 513, 940, 1296, 1518, 1581 |
| HpyCH4IV | ACGT | 1 cut(s) | 1008 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 713 |
| HpyF3I | CTNAG | 4 cut(s) | 579, 590, 694, 1656 |
| HpySE526I | ACGT | 1 cut(s) | 1008 |
| Hsp92II | CATG | 9 cut(s) | 145, 343, 571, 615, 746, 924, 1162, 1444, 1777 |
| HspAI | GCGC | 1 cut(s) | 227 |
| Kpn2I | TCCGGA | 1 cut(s) | 627 |
| KpnI | GGTACC | 1 cut(s) | 399 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| LmnI | GCTCC | 3 cut(s) | 333, 511, 1753 |
| Lsp1109I | GCAGC | 1 cut(s) | 508 |
| LweI | GCATC | 2 cut(s) | 799, 1390 |
| MaeI | CTAG | 6 cut(s) | 198, 222, 365, 1181, 1395, 1461 |
| MaeII | ACGT | 1 cut(s) | 1008 |
| MaeIII | GTNAC | 5 cut(s) | 107, 1015, 1063, 1105, 1374 |
| MalI | GATC | 9 cut(s) | 290, 486, 858, 919, 1167, 1185, 1498, 1554, 1633 |
| MboI | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| MfeI | CAATTG | 1 cut(s) | 820 |
| MflI | RGATCY | 3 cut(s) | 1183, 1496, 1631 |
| MlyI | GAGTC | 2 cut(s) | 1480, 1648 |
| MmeI | TCCRAC | 5 cut(s) | 280, 455, 895, 1143, 1285 |
| MroI | TCCGGA | 1 cut(s) | 627 |
| MroXI | GAANNNNTTC | 2 cut(s) | 873, 1367 |
| MseI | TTAA | 9 cut(s) | 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784 |
| MslI | CAYNNNNRTG | 3 cut(s) | 747, 869, 1439 |
| MspA1I | CMGCKG | 1 cut(s) | 494 |
| MspCI | CTTAAG | 2 cut(s) | 5, 1355 |
| MspI | CCGG | 2 cut(s) | 128, 628 |
| MspR9I | CCNGG | 2 cut(s) | 429, 661 |
| MunI | CAATTG | 1 cut(s) | 820 |
| MvaI | CCWGG | 2 cut(s) | 429, 661 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 224, 275, 713 |
| NdeI | CATATG | 1 cut(s) | 993 |
| NdeII | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| NlaIII | CATG | 9 cut(s) | 145, 343, 571, 615, 746, 924, 1162, 1444, 1777 |
| NlaIV | GGNNCC | 2 cut(s) | 397, 1498 |
| NmuCI | GTSAC | 2 cut(s) | 1105, 1374 |
| NspI | RCATGY | 2 cut(s) | 1444, 1777 |
| PagI | TCATGA | 2 cut(s) | 339, 742 |
| PceI | AGGCCT | 1 cut(s) | 716 |
| PciI | ACATGT | 2 cut(s) | 1440, 1773 |
| PdmI | GAANNNNTTC | 2 cut(s) | 873, 1367 |
| PfeI | GAWTC | 5 cut(s) | 169, 305, 647, 1132, 1231 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 708 |
| PkrI | GCNGC | 1 cut(s) | 523 |
| PleI | GAGTC | 2 cut(s) | 1480, 1648 |
| PpsI | GAGTC | 2 cut(s) | 1480, 1648 |
| Ppu21I | YACGTR | 1 cut(s) | 1009 |
| PscI | ACATGT | 2 cut(s) | 1440, 1773 |
| PsiI | TTATAA | 2 cut(s) | 675, 1241 |
| Psp6I | CCWGG | 2 cut(s) | 427, 659 |
| PspGI | CCWGG | 2 cut(s) | 427, 659 |
| PspN4I | GGNNCC | 2 cut(s) | 397, 1498 |
| PstI | CTGCAG | 1 cut(s) | 1051 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1516 |
| PsuI | RGATCY | 3 cut(s) | 1183, 1496, 1631 |
| PvuII | CAGCTG | 1 cut(s) | 494 |
| RsaI | GTAC | 5 cut(s) | 182, 264, 397, 1041, 1445 |
| RsaNI | GTAC | 5 cut(s) | 181, 263, 396, 1040, 1444 |
| RseI | CAYNNNNRTG | 3 cut(s) | 747, 869, 1439 |
| SaqAI | TTAA | 9 cut(s) | 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784 |
| SatI | GCNGC | 1 cut(s) | 522 |
| Sau3AI | GATC | 9 cut(s) | 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631 |
| SchI | GAGTC | 2 cut(s) | 1480, 1648 |
| ScrFI | CCNGG | 2 cut(s) | 429, 661 |
| SfaNI | GCATC | 2 cut(s) | 799, 1390 |
| SfcI | CTRYAG | 2 cut(s) | 1047, 1426 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 747, 869, 1439 |
| SmlI | CTYRAG | 4 cut(s) | 5, 728, 1355, 1448 |
| SmoI | CTYRAG | 4 cut(s) | 5, 728, 1355, 1448 |
| SnaBI | TACGTA | 1 cut(s) | 1009 |
| SpeI | ACTAGT | 1 cut(s) | 364 |
| SseBI | AGGCCT | 1 cut(s) | 716 |
| SsiI | CCGC | 2 cut(s) | 412, 1661 |
| SspI | AATATT | 1 cut(s) | 1366 |
| SspMI | CTAG | 6 cut(s) | 198, 222, 365, 1181, 1395, 1461 |
| StuI | AGGCCT | 1 cut(s) | 716 |
| StyD4I | CCNGG | 2 cut(s) | 427, 659 |
| StyI | CCWWGG | 1 cut(s) | 1500 |
| TaaI | ACNGT | 5 cut(s) | 513, 940, 1296, 1518, 1581 |
| TaiI | ACGT | 1 cut(s) | 1011 |
| TaqI | TCGA | 4 cut(s) | 25, 797, 867, 1616 |
| TfiI | GAWTC | 5 cut(s) | 169, 305, 647, 1132, 1231 |
| Tru1I | TTAA | 9 cut(s) | 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784 |
| Tru9I | TTAA | 9 cut(s) | 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784 |
| TscAI | CASTG | 3 cut(s) | 516, 767, 1338 |
| TseFI | GTSAC | 2 cut(s) | 1105, 1374 |
| TseI | GCWGC | 1 cut(s) | 521 |
| Tsp45I | GTSAC | 2 cut(s) | 1105, 1374 |
| TspDTI | ATGAA | 7 cut(s) | 597, 759, 831, 853, 1147, 1376, 1715 |
| TspRI | CASTG | 3 cut(s) | 516, 767, 1338 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 708 |
| Vha464I | CTTAAG | 2 cut(s) | 5, 1355 |
| XapI | RAATTY | 4 cut(s) | 133, 441, 584, 1702 |
| XbaI | TCTAGA | 1 cut(s) | 1180 |
| XceI | RCATGY | 2 cut(s) | 1444, 1777 |
| XmnI | GAANNNNTTC | 2 cut(s) | 873, 1367 |
| XspI | CTAG | 6 cut(s) | 198, 222, 365, 1181, 1395, 1461 |