Rroxscaffold_6G00425160

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
46155358 .. 46157655
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425160.1

Sequence Viewer

Length: 1821 bp
ATGCTTAAGCCGTCTGTCTTCTCTCGAAATTACAAGCCTGACACTTCAGGTAGGAAAATCGTTGATAGAGAACCACTTGTTCAGGGTTTAGTATCTGGTGGAGGGTGTAACCAATGTGTCATTTGTCCGGTGAATTCCTGCATGGTTGCCGAAACTTTAGACGAAAGGAATCAGAACTGGTACTGCTTTGTCTCCTCTAGTTGTTCCTACTGGTATGCCTCTAGTGCGCTTATAGTCTATATCGTTTCTTCTTGCAGGTTTGTACGGGCGAAAGTTGCAAATGATTTGATCATACAAGTTGGAGATTCCAGCTTTCACTTGCACAAGCTCCCTATGGTCATGAGAAGTGGATACTTGAACAGACTAGTATTCAAGACGAGTAATGTTGAGAGAGGTACCTGCCTCAAAATCCGCATAGACAATCTTCCAGGTGGAAACAAAATTTTTGAGTTAGTTGTCAAGTTTTGTTATGGTCGGAAGGTTGATCTAACAGCTGACAATATCGCTCCACTGTATTGTGCTGCACATTTCTTGGAAATGAGTGATGATTTTGAAGAAGGAAATCTCATGTCCAAAACTGAGGAATTTCTAAGCTTTTTGATATTTTCATCATGGAAAGACACTTTCCGGATTTTGACAAGCTGTGAATCCATTTCTTCCTGGGCAAAAAATTATAAAATCACAAAACGAAGCTCAGAAGCCATTGCTTGGAAGGCCTGCACAAACCTCAAGGCATTTAGTCATGAAGATGATGATATGCAGTGCTTTAGTGTTCTGCCAAATTATGTAGAGAAGTCGAAAGTTGAAGATGCACTTGACAATTGGTGGTTTGAAGATGTTTCATCCCTACGAGTAGATCATTTCATCGAAGTGGTTCAATCCCTAAAATGTAAAGGGATGAGAGCAGACCTTGTTGGATCATGTATAACTTATTGGACTGTTAAATGGCTTTCAAGAATAACCTCTGGACTTGAAAGTATGACCCCCAAGCATATGACCCACCAATACGTAAGAGTTACAACCGAGTGCTTGATTAAGGTACTGCCTGCAGAGGAGAAATCAGTTACTTGTAATTTTATACTTCACCTTCTGAAGATAGGGTTCGTGACAAAAATAAACTCTGATTTACTGAATCTGCTTGAAAGAAGAATAGCTTTCATGTTGGATCAATGTCGTCCTCTAGATCTCTTGGTTAGGAACTATGGAGATAAAGATAGTGTCTATGATGTGAATCTTGTTATAAGAGTGGTAATGGCTTATGTTTCTATTGTTTCCAAAAGTCCCACACCAAAACTGTTTGCTGTTGGAAGGTTGGTGGATGGGTATCTTACACTGGTTGCAAGGGATGAGAACCTTAAGATGAATATTTTCCAGTCACTTGTAGAAGCATTGCCTAGAGATGCTCGTTTTTGCGACGACAATCTCTATAGAGCCATTGACATGTACCTCAAGGCACACCCTAGCTTAACAGAAGAAGAAAGAATGACTCTGTGTGGATCCTTGGAATATCAGAGACTGTCCGAAGAAGCTCGTGAGCATATAAAAAAGAATGATCGGTTGCCCGTGAAGATTACAGCACGGTTTATTCTTCTTGAACAAGTGAATATGATGAGGTCGATGACAGCTATTGGATCTAATTACCGAAGAACAAAGACTCAGGCGGTTGTGAGAGTTAAAAAAGGTTTAGGTAAGGGATGGATGAATTCCCAGAAGGAACTAAACTTAATGATAAAAGAGGTTGAGACAATGAGGGAGCAACTTAATGATTTGCACATGTGTAAATTAAAGCTTCAAAATCAACTGAAAGGATGTATTATATAG

Protein Analysis

606

Amino Acids

69.48

Weight (kDa)

8.73

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 94 - 182 1.2e-08 BTB/POZ domain
NPH3 PF03000 274 - 510 1.1e-69 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 675, 1241
Acc36I ACCTGC 2 cut(s) 246, 407
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 627
AciI CCGC 2 cut(s) 412, 1661
AclWI GGATC 5 cut(s) 925, 1173, 1491, 1504, 1639
AcsI RAATTY 4 cut(s) 133, 441, 584, 1702
AcuI CTGAAG 2 cut(s) 30, 1112
AfaI GTAC 5 cut(s) 182, 264, 397, 1041, 1445
AfiI CCNNNNNNNGG 1 cut(s) 708
AflII CTTAAG 2 cut(s) 5, 1355
AflIII ACRYGT 2 cut(s) 1440, 1773
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 2 cut(s) 427, 659
Alw26I GTCTC 3 cut(s) 196, 1507, 1736
AlwI GGATC 5 cut(s) 925, 1173, 1491, 1504, 1639
AlwNI CAGNNNCTG 1 cut(s) 1516
Aor13HI TCCGGA 1 cut(s) 627
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 4 cut(s) 133, 441, 584, 1702
Asp700I GAANNNNTTC 2 cut(s) 873, 1367
Asp718I GGTACC 1 cut(s) 395
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 142, 1076
BamHI GGATCC 1 cut(s) 1496
BanI GGYRCC 1 cut(s) 395
BauI CACGAG 1 cut(s) 1530
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 1313, 1689
BciT130I CCWGG 2 cut(s) 429, 661
BciVI GTATCC 1 cut(s) 344
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 196, 1507, 1736
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 6 cut(s) 198, 222, 365, 1181, 1395, 1461
BfmI CTRYAG 2 cut(s) 1047, 1426
BfrI CTTAAG 2 cut(s) 5, 1355
BfuAI ACCTGC 2 cut(s) 246, 407
BfuI GTATCC 1 cut(s) 344
BglII AGATCT 1 cut(s) 1183
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 429, 661
BmiI GGNNCC 2 cut(s) 397, 1498
BmrFI CCNGG 2 cut(s) 429, 661
BmsI GCATC 2 cut(s) 799, 1390
BpiI GAAGAC 1 cut(s) 10
BpuEI CTTGAG 2 cut(s) 713, 1433
BsaAI YACGTR 1 cut(s) 1009
BsaBI GATNNNNATC 2 cut(s) 1230, 1323
BsaJI CCNNGG 2 cut(s) 660, 1500
BsaWI WCCGGW 2 cut(s) 127, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 708
Bse1I ACTGG 4 cut(s) 182, 215, 1338, 1372
Bse3DI GCAATG 2 cut(s) 702, 1388
Bse8I GATNNNNATC 2 cut(s) 1230, 1323
BseAI TCCGGA 1 cut(s) 627
BseBI CCWGG 2 cut(s) 429, 661
BseDI CCNNGG 2 cut(s) 660, 1500
BseGI GGATG 7 cut(s) 842, 903, 1324, 1351, 1700, 1704, 1814
BseJI GATNNNNATC 2 cut(s) 1230, 1323
BseLI CCNNNNNNNGG 1 cut(s) 708
BseMI GCAATG 2 cut(s) 702, 1388
BseMII CTCAG 3 cut(s) 570, 708, 1670
BseNI ACTGG 4 cut(s) 182, 215, 1338, 1372
BseRI GAGGAG 2 cut(s) 184, 1067
BseXI GCAGC 1 cut(s) 508
BsgI GTGCAG 2 cut(s) 507, 703
BshFI GGCC 1 cut(s) 716
BshNI GGYRCC 1 cut(s) 395
BsiSI CCGG 2 cut(s) 128, 628
BslFI GGGAC 1 cut(s) 1266
BslI CCNNNNNNNGG 1 cut(s) 708
BsmAI GTCTC 3 cut(s) 196, 1507, 1736
BsmFI GGGAC 1 cut(s) 1266
BsnI GGCC 1 cut(s) 716
Bsp13I TCCGGA 1 cut(s) 627
Bsp143I GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
BspACI CCGC 2 cut(s) 412, 1661
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 3 cut(s) 571, 707, 1669
BspEI TCCGGA 1 cut(s) 627
BspHI TCATGA 2 cut(s) 339, 742
BspLI GGNNCC 2 cut(s) 397, 1498
BspMAI CTGCAG 1 cut(s) 1051
BspMI ACCTGC 2 cut(s) 246, 407
BspPI GGATC 5 cut(s) 925, 1173, 1491, 1504, 1639
BspT107I GGYRCC 1 cut(s) 395
BspTI CTTAAG 2 cut(s) 5, 1355
BsrDI GCAATG 2 cut(s) 702, 1388
BsrI ACTGG 4 cut(s) 182, 215, 1338, 1372
BssECI CCNNGG 2 cut(s) 660, 1500
BssMI GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
BssSI CACGAG 1 cut(s) 1530
BssT1I CCWWGG 1 cut(s) 1500
Bst2BI CACGAG 1 cut(s) 1530
Bst2UI CCWGG 2 cut(s) 429, 661
Bst4CI ACNGT 5 cut(s) 513, 940, 1296, 1518, 1581
BstAFI CTTAAG 2 cut(s) 5, 1355
BstBAI YACGTR 1 cut(s) 1009
BstC8I GCNNGC 2 cut(s) 718, 1047
BstDEI CTNAG 4 cut(s) 579, 590, 694, 1656
BstF5I GGATG 7 cut(s) 842, 903, 1324, 1351, 1700, 1704, 1814
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 9 cut(s) 291, 487, 859, 920, 1168, 1186, 1499, 1555, 1634
BstMAI GTCTC 3 cut(s) 196, 1507, 1736
BstMBI GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
BstMWI GCNNNNNNNGC 3 cut(s) 224, 275, 713
BstNI CCWGG 2 cut(s) 429, 661
BstNSI RCATGY 2 cut(s) 1444, 1777
BstSCI CCNGG 2 cut(s) 427, 659
BstSFI CTRYAG 2 cut(s) 1047, 1426
BstSNI TACGTA 1 cut(s) 1009
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 3 cut(s) 1183, 1496, 1631
BstYI RGATCY 3 cut(s) 1183, 1496, 1631
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 7 cut(s) 842, 903, 1324, 1351, 1700, 1704, 1814
BtsI GCAGTG 1 cut(s) 767
BtsIMutI CAGTG 3 cut(s) 509, 767, 1331
BveI ACCTGC 2 cut(s) 246, 407
Cac8I GCNNGC 2 cut(s) 718, 1047
CaiI CAGNNNCTG 1 cut(s) 1516
CciI TCATGA 2 cut(s) 339, 742
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 5 cut(s) 181, 263, 396, 1040, 1444
CviAII CATG 9 cut(s) 142, 340, 568, 612, 743, 921, 1159, 1441, 1774
CviQI GTAC 5 cut(s) 181, 263, 396, 1040, 1444
DdeI CTNAG 4 cut(s) 579, 590, 694, 1656
DpnI GATC 9 cut(s) 290, 486, 858, 919, 1167, 1185, 1498, 1554, 1633
DpnII GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
Eco105I TACGTA 1 cut(s) 1009
Eco130I CCWWGG 1 cut(s) 1500
Eco147I AGGCCT 1 cut(s) 716
Eco57I CTGAAG 2 cut(s) 30, 1112
EcoRI GAATTC 2 cut(s) 133, 1702
EcoRII CCWGG 2 cut(s) 427, 659
EcoT14I CCWWGG 1 cut(s) 1500
ErhI CCWWGG 1 cut(s) 1500
FaeI CATG 9 cut(s) 145, 343, 571, 615, 746, 924, 1162, 1444, 1777
FalI AAGNNNNNCTT 4 cut(s) 798, 830, 1138, 1170
FaqI GGGAC 1 cut(s) 1266
FatI CATG 9 cut(s) 141, 339, 567, 611, 742, 920, 1158, 1440, 1773
FauNDI CATATG 1 cut(s) 993
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 6 cut(s) 829, 910, 1331, 1358, 1707, 1711
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 6 cut(s) 198, 222, 365, 1181, 1395, 1461
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 716
HapII CCGG 2 cut(s) 128, 628
HhaI GCGC 1 cut(s) 229
Hin1II CATG 9 cut(s) 145, 343, 571, 615, 746, 924, 1162, 1444, 1777
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 2 cut(s) 592, 1787
HinfI GANTC 7 cut(s) 169, 305, 647, 1132, 1231, 1486, 1654
HpaII CCGG 2 cut(s) 128, 628
HphI GGTGA 2 cut(s) 142, 1076
Hpy188I TCNGA 7 cut(s) 174, 477, 697, 1092, 1123, 1512, 1522
Hpy99I CGWCG 1 cut(s) 1418
HpyAV CCTTC 6 cut(s) 472, 551, 706, 1097, 1302, 1705
HpyCH4III ACNGT 5 cut(s) 513, 940, 1296, 1518, 1581
HpyCH4IV ACGT 1 cut(s) 1008
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 275, 713
HpyF3I CTNAG 4 cut(s) 579, 590, 694, 1656
HpySE526I ACGT 1 cut(s) 1008
Hsp92II CATG 9 cut(s) 145, 343, 571, 615, 746, 924, 1162, 1444, 1777
HspAI GCGC 1 cut(s) 227
Kpn2I TCCGGA 1 cut(s) 627
KpnI GGTACC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
LmnI GCTCC 3 cut(s) 333, 511, 1753
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 799, 1390
MaeI CTAG 6 cut(s) 198, 222, 365, 1181, 1395, 1461
MaeII ACGT 1 cut(s) 1008
MaeIII GTNAC 5 cut(s) 107, 1015, 1063, 1105, 1374
MalI GATC 9 cut(s) 290, 486, 858, 919, 1167, 1185, 1498, 1554, 1633
MboI GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
MfeI CAATTG 1 cut(s) 820
MflI RGATCY 3 cut(s) 1183, 1496, 1631
MlyI GAGTC 2 cut(s) 1480, 1648
MmeI TCCRAC 5 cut(s) 280, 455, 895, 1143, 1285
MroI TCCGGA 1 cut(s) 627
MroXI GAANNNNTTC 2 cut(s) 873, 1367
MseI TTAA 9 cut(s) 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784
MslI CAYNNNNRTG 3 cut(s) 747, 869, 1439
MspA1I CMGCKG 1 cut(s) 494
MspCI CTTAAG 2 cut(s) 5, 1355
MspI CCGG 2 cut(s) 128, 628
MspR9I CCNGG 2 cut(s) 429, 661
MunI CAATTG 1 cut(s) 820
MvaI CCWGG 2 cut(s) 429, 661
MwoI GCNNNNNNNGC 3 cut(s) 224, 275, 713
NdeI CATATG 1 cut(s) 993
NdeII GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
NlaIII CATG 9 cut(s) 145, 343, 571, 615, 746, 924, 1162, 1444, 1777
NlaIV GGNNCC 2 cut(s) 397, 1498
NmuCI GTSAC 2 cut(s) 1105, 1374
NspI RCATGY 2 cut(s) 1444, 1777
PagI TCATGA 2 cut(s) 339, 742
PceI AGGCCT 1 cut(s) 716
PciI ACATGT 2 cut(s) 1440, 1773
PdmI GAANNNNTTC 2 cut(s) 873, 1367
PfeI GAWTC 5 cut(s) 169, 305, 647, 1132, 1231
PflMI CCANNNNNTGG 1 cut(s) 708
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 2 cut(s) 1480, 1648
PpsI GAGTC 2 cut(s) 1480, 1648
Ppu21I YACGTR 1 cut(s) 1009
PscI ACATGT 2 cut(s) 1440, 1773
PsiI TTATAA 2 cut(s) 675, 1241
Psp6I CCWGG 2 cut(s) 427, 659
PspGI CCWGG 2 cut(s) 427, 659
PspN4I GGNNCC 2 cut(s) 397, 1498
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 1 cut(s) 1516
PsuI RGATCY 3 cut(s) 1183, 1496, 1631
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 5 cut(s) 182, 264, 397, 1041, 1445
RsaNI GTAC 5 cut(s) 181, 263, 396, 1040, 1444
RseI CAYNNNNRTG 3 cut(s) 747, 869, 1439
SaqAI TTAA 9 cut(s) 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 9 cut(s) 288, 484, 856, 917, 1165, 1183, 1496, 1552, 1631
SchI GAGTC 2 cut(s) 1480, 1648
ScrFI CCNGG 2 cut(s) 429, 661
SfaNI GCATC 2 cut(s) 799, 1390
SfcI CTRYAG 2 cut(s) 1047, 1426
SmiMI CAYNNNNRTG 3 cut(s) 747, 869, 1439
SmlI CTYRAG 4 cut(s) 5, 728, 1355, 1448
SmoI CTYRAG 4 cut(s) 5, 728, 1355, 1448
SnaBI TACGTA 1 cut(s) 1009
SpeI ACTAGT 1 cut(s) 364
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 2 cut(s) 412, 1661
SspI AATATT 1 cut(s) 1366
SspMI CTAG 6 cut(s) 198, 222, 365, 1181, 1395, 1461
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 2 cut(s) 427, 659
StyI CCWWGG 1 cut(s) 1500
TaaI ACNGT 5 cut(s) 513, 940, 1296, 1518, 1581
TaiI ACGT 1 cut(s) 1011
TaqI TCGA 4 cut(s) 25, 797, 867, 1616
TfiI GAWTC 5 cut(s) 169, 305, 647, 1132, 1231
Tru1I TTAA 9 cut(s) 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784
Tru9I TTAA 9 cut(s) 6, 942, 1035, 1356, 1466, 1674, 1724, 1761, 1784
TscAI CASTG 3 cut(s) 516, 767, 1338
TseFI GTSAC 2 cut(s) 1105, 1374
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 2 cut(s) 1105, 1374
TspDTI ATGAA 7 cut(s) 597, 759, 831, 853, 1147, 1376, 1715
TspRI CASTG 3 cut(s) 516, 767, 1338
Van91I CCANNNNNTGG 1 cut(s) 708
Vha464I CTTAAG 2 cut(s) 5, 1355
XapI RAATTY 4 cut(s) 133, 441, 584, 1702
XbaI TCTAGA 1 cut(s) 1180
XceI RCATGY 2 cut(s) 1444, 1777
XmnI GAANNNNTTC 2 cut(s) 873, 1367
XspI CTAG 6 cut(s) 198, 222, 365, 1181, 1395, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.