FvH4_6g05840

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009621
Physical Location & Seq
Forward (+)
3317059 .. 3321795
4737 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05840.t2

Sequence Viewer

Length: 1026 bp
ATGGCTTCATCCACATACCCAAGCTCGTTGTTTAACTTGAGCTCCAGTTCTTCAACATCAGCCACACGCTTGCCCTTGAGGTTTTCTGGGTCTAGCTTTAATGGGTGCAATGGAGTTTCAGTGACTAAGGCTTGGTTTAGTAGTGGGTCAAGAATATGTGCCAAGTTTGAGAAGTTTCAAGCTGAGGATGAGCTTGAAGAAACCAACACAACACCATCCTTACCAGAGGTTGAAGAAGATGGTGTGCAGGAAGAAGATGACAGCTGCTTGCCTTCTGACTTGGAGGGTGCAGTCCGTCAATCGGGTGAAGCAAGTGCGTCATTTGTTTCTTCAGGAGGAATGAGAGCCATAGTTGAACTTTTAATTCCCCAGCTGCAGTTTCTAGATGAAGAAGGGGCACAAGCTGAGCTCTGGGAGTTATCAAGGGTTTTCTTGGATACACTTATAGAGGAAACTGGATGTGAGAGAGTTAAAGCTGTATTTCCTGATGCTGGAGCAGCAGCTCTTCTAAAATATCGGTGGACAGATGCTGCTTTTGGATTCGCCAGCTTAAGTGACCGGAAGCCCATAACAAGTGAAGATGAGATTGTGGTTATGATTGTACCTGATTATCAGATGTTGGAATATGTAGAGAGACTTGCATCCAGTTTGTTAGATGATCCGCCAAGGCCTCTAATCATGTGGAACCCACGTCTCATCAGTGAGGATGTTGGAGTTGGATTTAATGTACGAAAGTTAAGGCGGTACTTTTTGAGCACTTTTACGACAGTCTACTCAATGAGGCCTATGGAATCCGGGGCTGTATTTAGGTGCTATCCAGGGTCATGGAAGGTATTCTTTGATGACAAGGAGAGACCAAACAGATATCTGCTTGCCAAAGAGCTTTTGCGCCGTCCTGATGCTGAAGACCTTGAGATGATATTTGGAAATATGCAAGAGGATTCAGAGCAGGGCCCATCTTTGTTTGATAGGGCAGCAGGGATGTTCTCTTCAATGAACCGATTTATGAGGATCATTTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

342

Amino Acids

38.2

Weight (kDa)

4.6

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 91 - 305 1.8e-51 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AciI CCGC 2 cut(s) 662, 742
AclWI GGATC 2 cut(s) 653, 1019
AcuI CTGAAG 2 cut(s) 315, 924
AfaI GTAC 3 cut(s) 603, 729, 746
AfiI CCNNNNNNNGG 2 cut(s) 301, 491
AflII CTTAAG 1 cut(s) 550
AgsI TTSAA 7 cut(s) 54, 179, 197, 233, 356, 993, 1020
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 1 cut(s) 817
Alw21I GWGCWC 3 cut(s) 44, 411, 758
Alw26I GTCTC 3 cut(s) 628, 698, 847
AlwI GGATC 2 cut(s) 653, 1019
AlwNI CAGNNNCTG 1 cut(s) 530
AoxI GGCC 3 cut(s) 668, 782, 952
ApaI GGGCCC 1 cut(s) 956
ApeKI GCWGC 6 cut(s) 264, 373, 497, 500, 530, 974
Asp700I GAANNNNTTC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 891
AspS9I GGNCC 2 cut(s) 952, 953
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 400, 956
BanII GRGCYC 3 cut(s) 44, 411, 956
BbsI GAAGAC 1 cut(s) 912
Bbv12I GWGCWC 3 cut(s) 44, 411, 758
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 251, 360, 509, 512, 517, 986
BccI CCATC 3 cut(s) 223, 233, 964
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 819
BciVI GTATCC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 3 cut(s) 628, 698, 847
BfaI CTAG 2 cut(s) 93, 383
BfmI CTRYAG 1 cut(s) 374
BfrI CTTAAG 1 cut(s) 550
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 6 cut(s) 265, 374, 498, 501, 531, 975
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 6 cut(s) 266, 375, 499, 502, 532, 976
Bme1390I CCNGG 2 cut(s) 796, 819
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 2 cut(s) 952, 953
BmiI GGNNCC 2 cut(s) 686, 954
BmrFI CCNGG 2 cut(s) 796, 819
BmsI GCATC 4 cut(s) 478, 517, 650, 889
BpiI GAAGAC 1 cut(s) 912
BpmI CTGGAG 2 cut(s) 28, 513
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 3 cut(s) 58, 97, 932
BpuMI CCSGG 1 cut(s) 796
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 3 cut(s) 665, 795, 818
BsaWI WCCGGW 1 cut(s) 558
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 491
Bse1I ACTGG 3 cut(s) 45, 460, 645
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 3 cut(s) 665, 795, 818
BseGI GGATG 7 cut(s) 8, 193, 215, 464, 641, 712, 987
BseLI CCNNNNNNNGG 2 cut(s) 301, 491
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 174, 396
BseNI ACTGG 3 cut(s) 45, 460, 645
BseSI GKGCMC 2 cut(s) 400, 956
BseXI GCAGC 6 cut(s) 251, 360, 509, 512, 517, 986
BseYI CCCAGC 1 cut(s) 369
BsgI GTGCAG 2 cut(s) 266, 309
BshFI GGCC 3 cut(s) 670, 784, 954
BsiHKAI GWGCWC 3 cut(s) 44, 411, 758
BsiSI CCGG 2 cut(s) 559, 795
BslI CCNNNNNNNGG 2 cut(s) 301, 491
BsmAI GTCTC 3 cut(s) 628, 698, 847
BsmBI CGTCTC 1 cut(s) 698
BsnI GGCC 3 cut(s) 670, 784, 954
Bso31I GGTCTC 1 cut(s) 847
Bsp120I GGGCCC 1 cut(s) 952
Bsp1286I GDGCHC 5 cut(s) 44, 400, 411, 758, 956
Bsp143I GATC 2 cut(s) 658, 1011
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 2 cut(s) 662, 742
BspANI GGCC 3 cut(s) 670, 784, 954
BspCNI CTCAG 2 cut(s) 175, 397
BspLI GGNNCC 2 cut(s) 686, 954
BspMAI CTGCAG 1 cut(s) 378
BspPI GGATC 2 cut(s) 653, 1019
BspQI GCTCTTC 1 cut(s) 510
BspTI CTTAAG 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 847
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 3 cut(s) 45, 460, 645
BssECI CCNNGG 3 cut(s) 665, 795, 818
BssMI GATC 2 cut(s) 658, 1011
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 2 cut(s) 510, 994
BstAFI CTTAAG 1 cut(s) 550
BstC8I GCNNGC 4 cut(s) 71, 269, 547, 873
BstDEI CTNAG 3 cut(s) 126, 183, 405
BstF5I GGATG 7 cut(s) 8, 193, 215, 464, 641, 712, 987
BstHHI GCGC 1 cut(s) 891
BstKTI GATC 2 cut(s) 661, 1014
BstMAI GTCTC 3 cut(s) 628, 698, 847
BstMBI GATC 2 cut(s) 658, 1011
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 819
BstSCI CCNGG 2 cut(s) 794, 817
BstSFI CTRYAG 1 cut(s) 374
BstSLI GKGCMC 2 cut(s) 400, 956
BstV1I GCAGC 6 cut(s) 251, 360, 509, 512, 517, 986
BstV2I GAAGAC 1 cut(s) 912
BstXI CCANNNNNNTGG 1 cut(s) 825
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 3 cut(s) 670, 784, 954
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 7 cut(s) 8, 193, 215, 464, 641, 712, 987
BtsIMutI CAGTG 2 cut(s) 126, 706
Cac8I GCNNGC 4 cut(s) 71, 269, 547, 873
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 891
Cfr13I GGNCC 2 cut(s) 952, 953
CseI GACGC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 602, 728, 745
CviAII CATG 2 cut(s) 679, 825
CviQI GTAC 3 cut(s) 602, 728, 745
DdeI CTNAG 3 cut(s) 126, 183, 405
DpnI GATC 2 cut(s) 660, 1013
DpnII GATC 2 cut(s) 658, 1011
Eam1104I CTCTTC 2 cut(s) 510, 994
EarI CTCTTC 2 cut(s) 510, 994
EciI GGCGGA 1 cut(s) 651
Ecl136II GAGCTC 2 cut(s) 42, 409
Eco130I CCWWGG 1 cut(s) 665
Eco147I AGGCCT 2 cut(s) 670, 784
Eco24I GRGCYC 3 cut(s) 44, 411, 956
Eco31I GGTCTC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 866
Eco53kI GAGCTC 2 cut(s) 42, 409
Eco57I CTGAAG 2 cut(s) 315, 924
EcoICRI GAGCTC 2 cut(s) 42, 409
EcoO109I RGGNCCY 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 665
EcoT38I GRGCYC 3 cut(s) 44, 411, 956
ErhI CCWWGG 1 cut(s) 665
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 2 cut(s) 682, 828
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FatI CATG 2 cut(s) 678, 824
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 6 cut(s) 265, 374, 498, 501, 531, 975
FokI GGATG 6 cut(s) 200, 202, 471, 628, 719, 994
FriOI GRGCYC 3 cut(s) 44, 411, 956
Fsp4HI GCNGC 6 cut(s) 265, 374, 498, 501, 531, 975
FspBI CTAG 2 cut(s) 93, 383
GlaI GCGC 1 cut(s) 890
GluI GCNGC 6 cut(s) 265, 374, 498, 501, 531, 975
GsaI CCCAGC 1 cut(s) 373
GsuI CTGGAG 2 cut(s) 28, 513
HaeIII GGCC 3 cut(s) 670, 784, 954
HapII CCGG 2 cut(s) 559, 795
HgaI GACGC 1 cut(s) 306
HhaI GCGC 1 cut(s) 891
Hin1II CATG 2 cut(s) 682, 828
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HinfI GANTC 3 cut(s) 540, 791, 941
HpaII CCGG 2 cut(s) 559, 795
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 522, 772
Hpy188I TCNGA 3 cut(s) 277, 615, 946
Hpy188III TCNNGA 5 cut(s) 150, 333, 383, 485, 896
Hpy8I GTNNAC 2 cut(s) 522, 772
HpyAV CCTTC 3 cut(s) 282, 386, 823
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 6 cut(s) 108, 247, 290, 376, 641, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 3 cut(s) 126, 183, 405
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 2 cut(s) 682, 828
HspAI GCGC 1 cut(s) 889
Kzo9I GATC 2 cut(s) 658, 1011
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 47, 494
Lsp1109I GCAGC 6 cut(s) 251, 360, 509, 512, 517, 986
LweI GCATC 4 cut(s) 478, 517, 650, 889
MaeI CTAG 2 cut(s) 93, 383
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 121, 554
MalI GATC 2 cut(s) 660, 1013
MboI GATC 2 cut(s) 658, 1011
MhlI GDGCHC 5 cut(s) 44, 400, 411, 758, 956
MluCI AATT 1 cut(s) 363
MmeI TCCRAC 3 cut(s) 600, 691, 697
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 7 cut(s) 33, 99, 362, 471, 551, 723, 737
MspA1I CMGCKG 2 cut(s) 264, 373
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 2 cut(s) 559, 795
MspR9I CCNGG 2 cut(s) 796, 819
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 1 cut(s) 497
NciI CCSGG 1 cut(s) 796
NdeII GATC 2 cut(s) 658, 1011
NlaIII CATG 2 cut(s) 682, 828
NlaIV GGNNCC 2 cut(s) 686, 954
NmuCI GTSAC 2 cut(s) 121, 554
PceI AGGCCT 2 cut(s) 670, 784
PciSI GCTCTTC 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 833
PfeI GAWTC 3 cut(s) 540, 791, 941
PkrI GCNGC 6 cut(s) 266, 375, 499, 502, 532, 976
Psp124BI GAGCTC 2 cut(s) 44, 411
Psp6I CCWGG 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 369
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 2 cut(s) 686, 954
PspOMI GGGCCC 1 cut(s) 952
PspPI GGNCC 2 cut(s) 952, 953
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 530
PvuII CAGCTG 2 cut(s) 264, 373
RsaI GTAC 3 cut(s) 603, 729, 746
RsaNI GTAC 3 cut(s) 602, 728, 745
SacI GAGCTC 2 cut(s) 44, 411
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 7 cut(s) 33, 99, 362, 471, 551, 723, 737
SatI GCNGC 6 cut(s) 265, 374, 498, 501, 531, 975
Sau3AI GATC 2 cut(s) 658, 1011
Sau96I GGNCC 2 cut(s) 952, 953
ScrFI CCNGG 2 cut(s) 796, 819
SduI GDGCHC 5 cut(s) 44, 400, 411, 758, 956
SfaNI GCATC 4 cut(s) 478, 517, 650, 889
SfcI CTRYAG 1 cut(s) 374
SmlI CTYRAG 4 cut(s) 37, 76, 550, 911
SmoI CTYRAG 4 cut(s) 37, 76, 550, 911
Sse9I AATT 1 cut(s) 363
SseBI AGGCCT 2 cut(s) 670, 784
SsiI CCGC 2 cut(s) 662, 742
SspMI CTAG 2 cut(s) 93, 383
SstI GAGCTC 2 cut(s) 44, 411
StuI AGGCCT 2 cut(s) 670, 784
StyD4I CCNGG 2 cut(s) 794, 817
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 1 cut(s) 694
TasI AATT 1 cut(s) 363
TfiI GAWTC 3 cut(s) 540, 791, 941
Tru1I TTAA 7 cut(s) 33, 99, 362, 471, 551, 723, 737
Tru9I TTAA 7 cut(s) 33, 99, 362, 471, 551, 723, 737
TscAI CASTG 2 cut(s) 126, 706
TseFI GTSAC 2 cut(s) 121, 554
TseI GCWGC 6 cut(s) 264, 373, 497, 500, 530, 974
Tsp45I GTSAC 2 cut(s) 121, 554
TspDTI ATGAA 2 cut(s) 402, 1010
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 126, 706
Vha464I CTTAAG 1 cut(s) 550
XbaI TCTAGA 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 2 cut(s) 93, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.