Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034629.1

Orthogroup ID

OG0009621

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1790

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ctgcagtttctagatgaagaaggggcacaagctgagctctgggagttgtcaagggttttcctggatacccttatagaggaaactggatgtgagagagttaaagctgtatttcctgatgctggagcagcggcactactaaaatataagtggacagatgctgcttttggattcgccagcttaagtgaccggaaacccataacaagtgaagatgagattgtggttatgattgttcctgattatcagatgttggaatatgtagagagacttgcagccagtctttcagatgatccgccaaggcctctaatcatgtggaacccacgtctcatcagtgaggatgttggagttggatttaatgtacgaaagttaaggcggtactttctgagcacttttacgacggtctactcaatgaggcctatggaatccggtgctgtatttaggtgctatccagggtcttggaaggtattcttcgatgataaggatagaccaaacagatatctacttgccaaagagctcctgcgccgtcctgatgctgaagaccttgagctgatatttggaaatatgcaagaggattcagagcagggcccgtctttgtttgataaagcagcagggatgttctcttcaatgaaccgatttatgaggatcatttcaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1995

Protein Analysis

217

Amino Acids

24.94

Weight (kDa)

4.81

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27560 AT5G27560 AT5G27560 AT5G27560
fragaria_vesca	FvH4_6g05840 FvH4_6g05840
malus_domestica	MD12G1219300.v1.1
prunus_persica	Prupe.6G325900_v2.0.a1 Prupe.6G325900_v2.0.a1
pyrus_communis	pycom12g20480
rosa_chinensis	RchiOBHm_Chr3g0454751
rosa_laevigata	RLG00000025418
rosa_multiflora	Rmu_sc0001792.1_g000020 Rmu_sc0003140.1_g000020 Rmu_sc0034629.1_g000001
rosa_roxburghii	Rroxscaffold_6G00424790
rosa_rugosa	Rorug03G0002200
rosa_samantha	Rh3AG062200 Rh3BG064100 Rh3CG063000 Rh3DG063800
rosa_wichuraiana	Rw3G004840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	3 cut(s)	128, 290, 370
AclWI	GGATC	2 cut(s)	281, 647
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	2 cut(s)	357, 374
AfiI	CCNNNNNNNGG	2 cut(s)	76, 119
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	621, 648
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	60, 445
AluBI	AGCT	6 cut(s)	32, 37, 104, 177, 511, 544
AluI	AGCT	6 cut(s)	32, 37, 104, 177, 511, 544
Alw21I	GWGCWC	3 cut(s)	39, 386, 513
Alw26I	GTCTC	2 cut(s)	256, 326
AlwI	GGATC	2 cut(s)	281, 647
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	296, 410, 580
ApaI	GGGCCC	1 cut(s)	584
ApeKI	GCWGC	4 cut(s)	125, 158, 269, 602
Asp700I	GAANNNNTTC	1 cut(s)	461
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	580, 581
BaeGI	GKGCMC	2 cut(s)	28, 584
BanII	GRGCYC	3 cut(s)	39, 513, 584
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	3 cut(s)	39, 386, 513
BbvI	GCAGC	4 cut(s)	137, 145, 281, 614
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	2 cut(s)	62, 447
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	256, 326
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	2
BfrI	CTTAAG	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	5 cut(s)	126, 129, 159, 270, 603
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	5 cut(s)	127, 130, 160, 271, 604
Bme1390I	CCNGG	2 cut(s)	62, 447
BmgBI	CACGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	580, 581
BmiI	GGNNCC	2 cut(s)	314, 582
BmrFI	CCNGG	2 cut(s)	62, 447
BmsI	GCATC	3 cut(s)	106, 145, 517
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	293, 446
BsaWI	WCCGGW	2 cut(s)	186, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 119
Bse1I	ACTGG	2 cut(s)	88, 273
BseBI	CCWGG	2 cut(s)	62, 447
BseDI	CCNNGG	2 cut(s)	293, 446
BseGI	GGATG	3 cut(s)	92, 340, 615
BseLI	CCNNNNNNNGG	2 cut(s)	76, 119
BseMII	CTCAG	2 cut(s)	24, 371
BseNI	ACTGG	2 cut(s)	88, 273
BseSI	GKGCMC	2 cut(s)	28, 584
BseXI	GCAGC	4 cut(s)	137, 145, 281, 614
BshFI	GGCC	3 cut(s)	298, 412, 582
BsiHKAI	GWGCWC	3 cut(s)	39, 386, 513
BsiSI	CCGG	2 cut(s)	187, 423
BslI	CCNNNNNNNGG	2 cut(s)	76, 119
BsmAI	GTCTC	2 cut(s)	256, 326
BsmBI	CGTCTC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	298, 412, 582
Bsp120I	GGGCCC	1 cut(s)	580
Bsp1286I	GDGCHC	5 cut(s)	28, 39, 386, 513, 584
Bsp143I	GATC	2 cut(s)	286, 639
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	3 cut(s)	128, 290, 370
BspANI	GGCC	3 cut(s)	298, 412, 582
BspCNI	CTCAG	2 cut(s)	25, 372
BspLI	GGNNCC	2 cut(s)	314, 582
BspMAI	CTGCAG	1 cut(s)	6
BspPI	GGATC	2 cut(s)	281, 647
BspTI	CTTAAG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	88, 273
BssECI	CCNNGG	2 cut(s)	293, 446
BssMI	GATC	2 cut(s)	286, 639
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	62, 447
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	622
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	33, 380
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	92, 340, 615
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	2 cut(s)	289, 642
BstMAI	GTCTC	2 cut(s)	256, 326
BstMBI	GATC	2 cut(s)	286, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	2 cut(s)	62, 447
BstSCI	CCNGG	2 cut(s)	60, 445
BstSFI	CTRYAG	1 cut(s)	2
BstSLI	GKGCMC	2 cut(s)	28, 584
BstV1I	GCAGC	4 cut(s)	137, 145, 281, 614
BstV2I	GAAGAC	1 cut(s)	540
BstXI	CCANNNNNNTGG	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	298, 412, 582
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	92, 340, 615
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	580, 581
Csp6I	GTAC	2 cut(s)	356, 373
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	2 cut(s)	356, 373
DdeI	CTNAG	2 cut(s)	33, 380
DpnI	GATC	2 cut(s)	288, 641
DpnII	GATC	2 cut(s)	286, 639
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
EciI	GGCGGA	1 cut(s)	279
Ecl136II	GAGCTC	2 cut(s)	37, 511
Eco130I	CCWWGG	1 cut(s)	293
Eco147I	AGGCCT	2 cut(s)	298, 412
Eco24I	GRGCYC	3 cut(s)	39, 513, 584
Eco32I	GATATC	1 cut(s)	494
Eco53kI	GAGCTC	2 cut(s)	37, 511
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	2 cut(s)	37, 511
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	2 cut(s)	60, 445
EcoRV	GATATC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	3 cut(s)	39, 513, 584
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	310
FaiI	YATR	9 cut(s)	74, 144, 197, 224, 255, 308, 416, 560, 635
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	5 cut(s)	126, 129, 159, 270, 603
FokI	GGATG	3 cut(s)	99, 347, 622
FriOI	GRGCYC	3 cut(s)	39, 513, 584
Fsp4HI	GCNGC	5 cut(s)	126, 129, 159, 270, 603
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	5 cut(s)	126, 129, 159, 270, 603
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	298, 412, 582
HapII	CCGG	2 cut(s)	187, 423
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	3 cut(s)	168, 419, 569
HpaII	CCGG	2 cut(s)	187, 423
Hpy166II	GTNNAC	2 cut(s)	150, 400
Hpy188I	TCNGA	4 cut(s)	243, 283, 381, 574
Hpy188III	TCNNGA	4 cut(s)	11, 113, 233, 524
Hpy8I	GTNNAC	2 cut(s)	150, 400
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	14, 451
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	3 cut(s)	4, 269, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	33, 380
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	286, 639
LmnI	GCTCC	2 cut(s)	122, 516
Lsp1109I	GCAGC	4 cut(s)	137, 145, 281, 614
LweI	GCATC	3 cut(s)	106, 145, 517
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	288, 641
MboI	GATC	2 cut(s)	286, 639
MboII	GAAGA	5 cut(s)	29, 218, 457, 545, 609
MhlI	GDGCHC	5 cut(s)	28, 39, 386, 513, 584
MmeI	TCCRAC	3 cut(s)	228, 319, 325
MnlI	CCTC	6 cut(s)	70, 309, 325, 402, 559, 630
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	4 cut(s)	99, 179, 351, 365
MspA1I	CMGCKG	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	178
MspI	CCGG	2 cut(s)	187, 423
MspR9I	CCNGG	2 cut(s)	62, 447
MvaI	CCWGG	2 cut(s)	62, 447
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	2 cut(s)	286, 639
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	314, 582
NmuCI	GTSAC	1 cut(s)	182
PceI	AGGCCT	2 cut(s)	298, 412
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	168, 419, 569
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	127, 130, 160, 271, 604
Psp124BI	GAGCTC	2 cut(s)	39, 513
Psp6I	CCWGG	2 cut(s)	60, 445
PspGI	CCWGG	2 cut(s)	60, 445
PspN4I	GGNNCC	2 cut(s)	314, 582
PspOMI	GGGCCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	580, 581
PstI	CTGCAG	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	357, 374
RsaNI	GTAC	2 cut(s)	356, 373
SacI	GAGCTC	2 cut(s)	39, 513
SaqAI	TTAA	4 cut(s)	99, 179, 351, 365
SatI	GCNGC	5 cut(s)	126, 129, 159, 270, 603
Sau3AI	GATC	2 cut(s)	286, 639
Sau96I	GGNCC	2 cut(s)	580, 581
ScrFI	CCNGG	2 cut(s)	62, 447
SduI	GDGCHC	5 cut(s)	28, 39, 386, 513, 584
SfaNI	GCATC	3 cut(s)	106, 145, 517
SfcI	CTRYAG	1 cut(s)	2
SmlI	CTYRAG	2 cut(s)	178, 539
SmoI	CTYRAG	2 cut(s)	178, 539
SseBI	AGGCCT	2 cut(s)	298, 412
SsiI	CCGC	3 cut(s)	128, 290, 370
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	2 cut(s)	39, 513
StuI	AGGCCT	2 cut(s)	298, 412
StyD4I	CCNGG	2 cut(s)	60, 445
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	468
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	168, 419, 569
Tru1I	TTAA	4 cut(s)	99, 179, 351, 365
Tru9I	TTAA	4 cut(s)	99, 179, 351, 365
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	4 cut(s)	125, 158, 269, 602
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	30, 638
TspRI	CASTG	1 cut(s)	334
Vha464I	CTTAAG	1 cut(s)	178
XagI	CCTNNNNNAGG	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	461
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.