Rh3DG063800

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009621
Physical Location & Seq
Forward (+)
4244399 .. 4248353
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG063800.1

Sequence Viewer

Length: 837 bp
ATGGCTTCCACGTACCCAAGTTCCCTGTTTTACTTCTGCAGCTCCAGTTCTTCAAAACCCAGCTCAACTTCAGCCACACGCTTGCCCTTAGCTTTTTCTGGGTCTGGCTTTAATGGGTGCAATGGAGTTTCAGTCACCAAAGCTTGGTCTAGTAGTAGCTCAAGAATATGTGCCAAGTTTGAAAAGTTCCAAGCTGAGGAGAATCTTGAGGAAACCAACATGACATCATCTTTACAAGAAGTTGAAGAAGATGGTGAGCAGGAAGAAGATGACAGCTGCTTGCCTTCGGACTTGGAGGGTGCAGTCCGTCAATCGGGTGAAGCAAGTGCATCATTTGTTTCTTCAGGAGGACTGAGAGCCATAGTTGAGCTTTTAATTCCCCAGCTGCAGTTTCTAGATGAAGAAGGGGCACAAGCTGAGCTCTGGGAGTTGTCAAGGGTTTTCCTGGATACCCTTATAGAGGAAACTGGATGTGAGAGAGTTAAAGCTGTATTTCCTGATGCTGGAGCAGCAGCACTACTAAAATATAAGTGGACAGATGCTGCTTTTGGATTCGCCAGCTTAAGTGACCGGAAACCCATAACAAGTGAAGATGAGATTGTGGTTATGATTGTTCCTGATTATCAGATGTTGGAATATGTAGAGAGACTTGCAGCCAGTCTTTCAGATGATCCGCCAAGGCCTCTAATCATGTGGAACCCACGTCTCATCAGTGAGGATGTTGGAGTTGGATTTAATGTACGAAAGTTAAGGCGGTACTTTCTGAGCACTTTTACGACGGTCTACTCAATGAGGCCTATGGAATCCGGTGCTGTATTTAGGTGCTATCCAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

278

Amino Acids

30.6

Weight (kDa)

4.48

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 95 - 278 2.8e-43 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 783
AciI CCGC 2 cut(s) 674, 754
AclWI GGATC 1 cut(s) 665
AcuI CTGAAG 2 cut(s) 54, 327
AfaI GTAC 3 cut(s) 14, 741, 758
AfiI CCNNNNNNNGG 5 cut(s) 144, 196, 313, 460, 503
AflII CTTAAG 1 cut(s) 562
AgsI TTSAA 3 cut(s) 54, 182, 245
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 2 cut(s) 444, 829
Alw21I GWGCWC 2 cut(s) 423, 770
Alw26I GTCTC 2 cut(s) 640, 710
AlwI GGATC 1 cut(s) 665
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 2 cut(s) 680, 794
ApeKI GCWGC 7 cut(s) 39, 276, 385, 509, 512, 542, 653
AsuHPI GGTGA 3 cut(s) 127, 266, 329
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 423, 770
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 7 cut(s) 51, 263, 372, 521, 524, 529, 665
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 446, 831
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 640, 710
BfaI CTAG 2 cut(s) 150, 395
BfmI CTRYAG 2 cut(s) 37, 386
BfrI CTTAAG 1 cut(s) 562
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 7 cut(s) 40, 277, 386, 510, 513, 543, 654
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 7 cut(s) 41, 278, 387, 511, 514, 544, 655
Bme1390I CCNGG 2 cut(s) 446, 831
BmgBI CACGTC 1 cut(s) 704
BmiI GGNNCC 1 cut(s) 698
BmrFI CCNGG 2 cut(s) 446, 831
BmsI GCATC 3 cut(s) 338, 490, 529
BpmI CTGGAG 2 cut(s) 28, 525
Bpu10I CCTNAGC 2 cut(s) 88, 195
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 2 cut(s) 145, 227
BsaAI YACGTR 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 677, 830
BsaWI WCCGGW 2 cut(s) 570, 806
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 196, 313, 460, 503
Bse1I ACTGG 3 cut(s) 45, 472, 657
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 446, 831
BseDI CCNNGG 2 cut(s) 677, 830
BseGI GGATG 2 cut(s) 476, 724
BseLI CCNNNNNNNGG 5 cut(s) 144, 196, 313, 460, 503
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 4 cut(s) 186, 344, 408, 755
BseNI ACTGG 3 cut(s) 45, 472, 657
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 7 cut(s) 51, 263, 372, 521, 524, 529, 665
BseYI CCCAGC 2 cut(s) 59, 381
BsgI GTGCAG 1 cut(s) 321
BshFI GGCC 2 cut(s) 682, 796
BsiHKAI GWGCWC 2 cut(s) 423, 770
BsiSI CCGG 2 cut(s) 571, 807
BslI CCNNNNNNNGG 5 cut(s) 144, 196, 313, 460, 503
BsmAI GTCTC 2 cut(s) 640, 710
BsmBI CGTCTC 1 cut(s) 710
BsnI GGCC 2 cut(s) 682, 796
Bsp1286I GDGCHC 3 cut(s) 412, 423, 770
Bsp143I GATC 1 cut(s) 670
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 2 cut(s) 674, 754
BspANI GGCC 2 cut(s) 682, 796
BspCNI CTCAG 4 cut(s) 187, 345, 409, 756
BspLI GGNNCC 1 cut(s) 698
BspMAI CTGCAG 2 cut(s) 41, 390
BspPI GGATC 1 cut(s) 665
BspTI CTTAAG 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 3 cut(s) 45, 472, 657
BssECI CCNNGG 2 cut(s) 677, 830
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 1 cut(s) 677
Bst2UI CCWGG 2 cut(s) 446, 831
Bst4CI ACNGT 1 cut(s) 781
BstAFI CTTAAG 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 3 cut(s) 83, 281, 559
BstDEI CTNAG 5 cut(s) 88, 195, 353, 417, 764
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 2 cut(s) 476, 724
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 2 cut(s) 640, 710
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNI CCWGG 2 cut(s) 446, 831
BstSCI CCNGG 2 cut(s) 444, 829
BstSFI CTRYAG 2 cut(s) 37, 386
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 7 cut(s) 51, 263, 372, 521, 524, 529, 665
BsuI GTATCC 1 cut(s) 442
BsuRI GGCC 2 cut(s) 682, 796
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 2 cut(s) 476, 724
BtsIMutI CAGTG 1 cut(s) 718
Cac8I GCNNGC 3 cut(s) 83, 281, 559
CaiI CAGNNNCTG 1 cut(s) 542
Csp6I GTAC 3 cut(s) 13, 740, 757
CviAII CATG 2 cut(s) 220, 691
CviQI GTAC 3 cut(s) 13, 740, 757
DdeI CTNAG 5 cut(s) 88, 195, 353, 417, 764
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
EciI GGCGGA 1 cut(s) 663
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 677
Eco147I AGGCCT 2 cut(s) 682, 796
Eco24I GRGCYC 1 cut(s) 423
Eco53kI GAGCTC 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 54, 327
EcoICRI GAGCTC 1 cut(s) 421
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 444, 829
EcoT14I CCWWGG 1 cut(s) 677
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 677
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 2 cut(s) 223, 694
FatI CATG 2 cut(s) 219, 690
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 7 cut(s) 40, 277, 386, 510, 513, 543, 654
FokI GGATG 2 cut(s) 483, 731
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 7 cut(s) 40, 277, 386, 510, 513, 543, 654
FspBI CTAG 2 cut(s) 150, 395
GluI GCNGC 7 cut(s) 40, 277, 386, 510, 513, 543, 654
GsaI CCCAGC 2 cut(s) 63, 385
GsuI CTGGAG 2 cut(s) 28, 525
HaeIII GGCC 2 cut(s) 682, 796
HapII CCGG 2 cut(s) 571, 807
Hin1II CATG 2 cut(s) 223, 694
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 3 cut(s) 202, 552, 803
HpaII CCGG 2 cut(s) 571, 807
HphI GGTGA 3 cut(s) 127, 266, 329
Hpy166II GTNNAC 2 cut(s) 534, 784
Hpy188I TCNGA 4 cut(s) 289, 627, 667, 765
Hpy188III TCNNGA 6 cut(s) 162, 206, 345, 395, 497, 617
Hpy8I GTNNAC 2 cut(s) 534, 784
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 2 cut(s) 294, 398
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4IV ACGT 2 cut(s) 11, 703
HpyCH4V TGCA 6 cut(s) 39, 120, 302, 329, 388, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 5 cut(s) 88, 195, 353, 417, 764
HpySE526I ACGT 2 cut(s) 11, 703
Hsp92II CATG 2 cut(s) 223, 694
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 2 cut(s) 47, 506
Lsp1109I GCAGC 7 cut(s) 51, 263, 372, 521, 524, 529, 665
LweI GCATC 3 cut(s) 338, 490, 529
MaeI CTAG 2 cut(s) 150, 395
MaeII ACGT 2 cut(s) 11, 703
MaeIII GTNAC 2 cut(s) 133, 566
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 8 cut(s) 42, 257, 260, 275, 278, 333, 413, 602
MhlI GDGCHC 3 cut(s) 412, 423, 770
MluCI AATT 1 cut(s) 375
MmeI TCCRAC 3 cut(s) 612, 703, 709
MnlI CCTC 8 cut(s) 190, 202, 289, 341, 454, 693, 709, 786
MseI TTAA 6 cut(s) 111, 374, 483, 563, 735, 749
MspA1I CMGCKG 2 cut(s) 276, 385
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 2 cut(s) 571, 807
MspR9I CCNGG 2 cut(s) 446, 831
MvaI CCWGG 2 cut(s) 446, 831
MwoI GCNNNNNNNGC 1 cut(s) 509
NdeII GATC 1 cut(s) 670
NlaIII CATG 2 cut(s) 223, 694
NlaIV GGNNCC 1 cut(s) 698
NmuCI GTSAC 2 cut(s) 133, 566
PceI AGGCCT 2 cut(s) 682, 796
PfeI GAWTC 3 cut(s) 202, 552, 803
PflMI CCANNNNNTGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 7 cut(s) 41, 278, 387, 511, 514, 544, 655
Ppu21I YACGTR 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 444, 829
PspFI CCCAGC 2 cut(s) 59, 381
PspGI CCWGG 2 cut(s) 444, 829
PspN4I GGNNCC 1 cut(s) 698
PstI CTGCAG 2 cut(s) 41, 390
PstNI CAGNNNCTG 1 cut(s) 542
PvuII CAGCTG 2 cut(s) 276, 385
RsaI GTAC 3 cut(s) 14, 741, 758
RsaNI GTAC 3 cut(s) 13, 740, 757
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 6 cut(s) 111, 374, 483, 563, 735, 749
SatI GCNGC 7 cut(s) 40, 277, 386, 510, 513, 543, 654
Sau3AI GATC 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 446, 831
SduI GDGCHC 3 cut(s) 412, 423, 770
SfaNI GCATC 3 cut(s) 338, 490, 529
SfcI CTRYAG 2 cut(s) 37, 386
SmlI CTYRAG 3 cut(s) 160, 206, 562
SmoI CTYRAG 3 cut(s) 160, 206, 562
Sse9I AATT 1 cut(s) 375
SseBI AGGCCT 2 cut(s) 682, 796
SsiI CCGC 2 cut(s) 674, 754
SspMI CTAG 2 cut(s) 150, 395
SstI GAGCTC 1 cut(s) 423
StuI AGGCCT 2 cut(s) 682, 796
StyD4I CCNGG 2 cut(s) 444, 829
StyI CCWWGG 1 cut(s) 677
TaaI ACNGT 1 cut(s) 781
TaiI ACGT 2 cut(s) 14, 706
TasI AATT 1 cut(s) 375
TfiI GAWTC 3 cut(s) 202, 552, 803
Tru1I TTAA 6 cut(s) 111, 374, 483, 563, 735, 749
Tru9I TTAA 6 cut(s) 111, 374, 483, 563, 735, 749
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 2 cut(s) 133, 566
TseI GCWGC 7 cut(s) 39, 276, 385, 509, 512, 542, 653
Tsp45I GTSAC 2 cut(s) 133, 566
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 718
Van91I CCANNNNNTGG 1 cut(s) 144
Vha464I CTTAAG 1 cut(s) 562
XagI CCTNNNNNAGG 1 cut(s) 458
XbaI TCTAGA 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 2 cut(s) 150, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.