FvH4_6g06000

Belongs to the peptidase M24B family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
3426220 .. 3431896
5677 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06000.t1

Sequence Viewer

Length: 1605 bp
ATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCATTGACCCTGGATCAGTTTCTGTTTTCTTCCGATGCTGCAGAGGAATTAAAGCAGGGCATTGCTAAGAATAATCATGAGTTGGTTTTCCTGTATGATAAAAATCTTGTGGATGAAATATGGGAAGATTCAAGACCAGAACCTCCAAACAAACCAATTAGAGTACATGAACTGAGATATGCTGGTGTAGATGTGGCTTCAAAGTTATCATCTTTGAGGAATGAACTTGCTGCAGCTGGTTCATCTGCGATAGTTATATCTATGCTTGATGAAATTGCCTGGCTGTTGAATTTGAGAGGAAGTGATGTTCCACATTCACCTGTTATGTATGCTTATCTGATTGTGGAGCTTGATAAAGCAAAGTTATTTGTAGATACGTCCAAAGTAGGTGCTGAGGTGTTGGGTCACCTGGAGAATGCGGGTATTGAATTGAGGCCATATGACTCCATTCTTTCTGAAGTAGAAAGTCTGGCAGCAAAAGGAGCTAAAATTTGGTTGGATGCATCATCTGTGAATGCTGCGATTGTCCACACCTACAACACTGCTTGTGAGAAATATTACGAGAGCCTTGAAATAAAAAGAAAAAGTAAGACTAAGGCGTATGAGGACTCCAATGGTTGGTCTGAAGGACCCACCGGAATGTATAGGGTTTCCCCTATCTCTTTGGCAAAGGCTCTGAAAAATGATGCTGAGTTAGAAGGGATGCGAAATTGTCATTTAAGGGATGCTGCTGCTTTAACGCAGTTCTGGGTTTGGATCGAAGAGCAAATTAACAAAAATGTGAAACTAACTGAGGTAGAAGTTGCTGAAAAACTTCTTGAATTTCGTTCAACGCAGCCTGGTTTTCTAGATACAAGTTTTGACACCATCAGTGGCTCTGGTGCAAATGGTGCTATCATACATTATAAACCAGAACCAGATAGTTGCAGTGTTCTGGACAAAAAGAAACTCTTTCTTTTGGATAGTGGAGCCCAGTATGTGGATGGAACAACTGACATAACCCGCACCGTACATTTTGGTGAACCTACTGCACGTCAAAAAGATTGCTTCACCCGAGTTTTACAGGGTCATATAGCTCTTGATCAGGCAGTATTCCCTGAAAACACGCCTGGTTTTGTGTTAGATGCATTTGCTCGCTCTTTTCTTTGGAAGATCGGACTGGATTACCGACATGGAACTGGGCATGGTGTGGGAGCTGCATTAAATGTTCATGAGGGTCCTCAAAGTATTAGCTTTCGATATGGAAATACAACGCCCTTACAGAGTGGCATGATTGTTAGCAATGAACCTGGCTATTATGAAGACCATGCCTTCGGCATTCGAATTGAGAATCTTCTTGTCGTGAAAGAAGTTGACACGCCAAACCGTTTTGGAGGAATTGAATACCTGGGATTTGAAAAGCTCACATTTGTCCCCATTCAGGCCAAATTGATAGAGTTGTCTTTGCTATCTGCTGCGGAGTTTGATTGGCTTAATGATTATCATTCACAAGTTTGGGACAAGGTCTCACCATTGCTGGATGGTCCTGCTCGTCAATGGCTTTGGGACAACACAAGACCTTTAGTCAAGCAGTGA

Protein Analysis

535

Amino Acids

59.6

Weight (kDa)

5.13

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Creatinase_N_2 PF16189 55 - 241 1.3e-46 Creatinase/Prolidase N-terminal domain
Peptidase_M24 PF00557 243 - 460 1.2e-52 Metallopeptidase family M24
Peptidase_M24_C PF16188 471 - 531 9.2e-25 C-terminal region of peptidase_M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AccB7I CCANNNNNTGG 2 cut(s) 648, 1009
AciI CCGC 3 cut(s) 449, 1033, 1487
AclWI GGATC 2 cut(s) 51, 794
AcsI RAATTY 3 cut(s) 319, 519, 851
AcuI CTGAAG 2 cut(s) 507, 675
AfaI GTAC 2 cut(s) 195, 1041
AfiI CCNNNNNNNGG 4 cut(s) 20, 648, 1009, 1450
AgsI TTSAA 9 cut(s) 162, 231, 319, 458, 602, 851, 861, 1412, 1427
AhdI GACNNNNNGTC 1 cut(s) 1592
AjiI CACGTC 1 cut(s) 1064
AjnI CCWGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 7 cut(s) 266, 379, 515, 1106, 1226, 1263, 1432
AluI AGCT 7 cut(s) 266, 379, 515, 1106, 1226, 1263, 1432
Alw26I GTCTC 1 cut(s) 1540
AlwI GGATC 2 cut(s) 51, 794
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 1083
AoxI GGCC 3 cut(s) 11, 464, 1452
ApoI RAATTY 3 cut(s) 319, 519, 851
ArsI GACNNNNNNTTYG 2 cut(s) 1325, 1357
Asp700I GAANNNNTTC 1 cut(s) 843
AspS9I GGNCC 4 cut(s) 12, 659, 1247, 1553
AsuHPI GGTGA 5 cut(s) 339, 428, 1061, 1072, 1530
AsuII TTCGAA 1 cut(s) 1351
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 3 cut(s) 659, 1247, 1553
BanII GRGCYC 1 cut(s) 1003
BbsI GAAGAC 1 cut(s) 1338
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 905, 1007, 1544
BciT130I CCWGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
BclI TGATCA 1 cut(s) 1111
BcoDI GTCTC 1 cut(s) 1540
BfaI CTAG 1 cut(s) 878
BfmI CTRYAG 2 cut(s) 69, 261
Bme1390I CCNGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
Bme18I GGWCC 3 cut(s) 659, 1247, 1553
BmeRI GACNNNNNGTC 1 cut(s) 1592
BmeT110I CYCGRG 1 cut(s) 1083
BmgBI CACGTC 1 cut(s) 1064
BmgT120I GGNCC 4 cut(s) 12, 659, 1247, 1553
BmiI GGNNCC 4 cut(s) 14, 661, 1000, 1248
BmrFI CCNGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
BmrI ACTGGG 2 cut(s) 997, 1218
BmsI GCATC 7 cut(s) 55, 520, 542, 706, 723, 745, 1144
BmuI ACTGGG 2 cut(s) 997, 1218
BpiI GAAGAC 1 cut(s) 1338
BpmI CTGGAG 1 cut(s) 461
Bpu10I CCTNAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 1351
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 1540
BsaJI CCNNGG 3 cut(s) 15, 39, 1417
BsaWI WCCGGW 1 cut(s) 665
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 648, 1009, 1450
Bse1I ACTGG 3 cut(s) 1003, 1194, 1213
Bse3DI GCAATG 3 cut(s) 90, 1318, 1541
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
BseDI CCNNGG 3 cut(s) 15, 39, 1417
BseGI GGATG 6 cut(s) 148, 535, 738, 760, 1018, 1555
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 4 cut(s) 20, 648, 1009, 1450
BseMI GCAATG 3 cut(s) 90, 1318, 1541
BseMII CTCAG 4 cut(s) 194, 414, 711, 813
BseNI ACTGG 3 cut(s) 1003, 1194, 1213
BsgI GTGCAG 1 cut(s) 1044
BshFI GGCC 3 cut(s) 13, 466, 1454
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 1 cut(s) 666
BslFI GGGAC 3 cut(s) 1427, 1541, 1589
BslI CCNNNNNNNGG 4 cut(s) 20, 648, 1009, 1450
BsmAI GTCTC 1 cut(s) 1540
BsmFI GGGAC 3 cut(s) 1427, 1541, 1589
BsmI GAATGC 3 cut(s) 451, 550, 1347
BsnI GGCC 3 cut(s) 13, 466, 1454
Bso31I GGTCTC 1 cut(s) 1540
BsoBI CYCGRG 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 1351
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 43, 786, 1111, 1182
BspACI CCGC 3 cut(s) 449, 1033, 1487
BspANI GGCC 3 cut(s) 13, 466, 1454
BspCNI CTCAG 4 cut(s) 195, 415, 712, 814
BspHI TCATGA 2 cut(s) 106, 1240
BspLI GGNNCC 4 cut(s) 14, 661, 1000, 1248
BspMAI CTGCAG 2 cut(s) 73, 265
BspPI GGATC 2 cut(s) 51, 794
BspQI GCTCTTC 1 cut(s) 786
BspT104I TTCGAA 1 cut(s) 1351
BspTNI GGTCTC 1 cut(s) 1540
BsrDI GCAATG 3 cut(s) 90, 1318, 1541
BsrI ACTGG 3 cut(s) 1003, 1194, 1213
BssECI CCNNGG 3 cut(s) 15, 39, 1417
BssMI GATC 4 cut(s) 43, 786, 1111, 1182
Bst2UI CCWGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
Bst4CI ACNGT 2 cut(s) 1039, 1397
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 1351
BstC8I GCNNGC 1 cut(s) 1165
BstDEI CTNAG 6 cut(s) 96, 203, 423, 624, 720, 822
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 6 cut(s) 148, 535, 738, 760, 1018, 1555
BstKTI GATC 4 cut(s) 46, 789, 1114, 1185
BstMAI GTCTC 1 cut(s) 1540
BstMBI GATC 4 cut(s) 43, 786, 1111, 1182
BstMWI GCNNNNNNNGC 2 cut(s) 512, 920
BstNI CCWGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
BstSFI CTRYAG 2 cut(s) 69, 261
BstV2I GAAGAC 1 cut(s) 1338
BsuRI GGCC 3 cut(s) 13, 466, 1454
BtrI CACGTC 1 cut(s) 1064
BtsCI GGATG 6 cut(s) 148, 535, 738, 760, 1018, 1555
BtsI GCAGTG 2 cut(s) 570, 964
BtsIMutI CAGTG 3 cut(s) 570, 907, 964
Cac8I GCNNGC 1 cut(s) 1165
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 2 cut(s) 106, 1240
Cfr13I GGNCC 4 cut(s) 12, 659, 1247, 1553
Csp6I GTAC 2 cut(s) 194, 1040
CviAII CATG 7 cut(s) 107, 197, 1202, 1214, 1241, 1300, 1337
CviQI GTAC 2 cut(s) 194, 1040
DdeI CTNAG 6 cut(s) 96, 203, 423, 624, 720, 822
DpnI GATC 4 cut(s) 45, 788, 1113, 1184
DpnII GATC 4 cut(s) 43, 786, 1111, 1182
DriI GACNNNNNGTC 1 cut(s) 1592
Eam1104I CTCTTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 1592
EarI CTCTTC 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 1003
Eco31I GGTCTC 1 cut(s) 1540
Eco47I GGWCC 3 cut(s) 659, 1247, 1553
Eco57I CTGAAG 2 cut(s) 507, 675
Eco88I CYCGRG 1 cut(s) 1083
Eco91I GGTNACC 1 cut(s) 434
EcoO109I RGGNCCY 2 cut(s) 659, 1247
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
EcoT22I ATGCAT 2 cut(s) 535, 1159
EcoT38I GRGCYC 1 cut(s) 1003
FaeI CATG 7 cut(s) 110, 200, 1205, 1217, 1244, 1303, 1340
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FaqI GGGAC 3 cut(s) 1427, 1541, 1589
FatI CATG 7 cut(s) 106, 196, 1201, 1213, 1240, 1299, 1336
FauI CCCGC 2 cut(s) 442, 1040
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 1111
FokI GGATG 6 cut(s) 155, 542, 745, 767, 1025, 1562
FriOI GRGCYC 1 cut(s) 1003
FspBI CTAG 1 cut(s) 878
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 3 cut(s) 13, 466, 1454
HapII CCGG 1 cut(s) 666
Hin1II CATG 7 cut(s) 110, 200, 1205, 1217, 1244, 1303, 1340
HincII GTYRAC 1 cut(s) 1384
HindII GTYRAC 1 cut(s) 1384
HinfI GANTC 4 cut(s) 158, 473, 638, 1360
HpaII CCGG 1 cut(s) 666
HphI GGTGA 5 cut(s) 339, 428, 1061, 1072, 1530
Hpy166II GTNNAC 3 cut(s) 559, 1052, 1384
Hpy188I TCNGA 6 cut(s) 64, 369, 487, 655, 708, 1187
Hpy188III TCNNGA 8 cut(s) 107, 162, 848, 878, 965, 1109, 1241, 1372
Hpy8I GTNNAC 3 cut(s) 559, 1052, 1384
HpyAV CCTTC 3 cut(s) 650, 722, 1351
HpyCH4III ACNGT 2 cut(s) 1039, 1397
HpyCH4IV ACGT 2 cut(s) 407, 1063
HpyCH4V TGCA 8 cut(s) 71, 263, 533, 914, 957, 1061, 1157, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 920
HpyF3I CTNAG 6 cut(s) 96, 203, 423, 624, 720, 822
HpySE526I ACGT 2 cut(s) 407, 1063
Hsp92II CATG 7 cut(s) 110, 200, 1205, 1217, 1244, 1303, 1340
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 4 cut(s) 43, 786, 1111, 1182
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 4 cut(s) 376, 512, 998, 1223
LweI GCATC 7 cut(s) 55, 520, 542, 706, 723, 745, 1144
MaeI CTAG 1 cut(s) 878
MaeII ACGT 2 cut(s) 407, 1063
MaeIII GTNAC 1 cut(s) 434
MalI GATC 4 cut(s) 45, 788, 1113, 1184
MboI GATC 4 cut(s) 43, 786, 1111, 1182
MboII GAAGA 6 cut(s) 51, 167, 803, 1192, 1343, 1355
MhlI GDGCHC 1 cut(s) 1003
MlyI GAGTC 2 cut(s) 467, 632
MmeI TCCRAC 1 cut(s) 507
Mph1103I ATGCAT 2 cut(s) 535, 1159
MroXI GAANNNNTTC 1 cut(s) 843
MseI TTAA 6 cut(s) 80, 749, 767, 801, 1232, 1503
MslI CAYNNNNRTG 2 cut(s) 668, 1047
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 666
MspR9I CCNGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
Mva1269I GAATGC 3 cut(s) 451, 550, 1347
MvaI CCWGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
MwoI GCNNNNNNNGC 2 cut(s) 512, 920
NdeI CATATG 1 cut(s) 469
NdeII GATC 4 cut(s) 43, 786, 1111, 1182
NlaIII CATG 7 cut(s) 110, 200, 1205, 1217, 1244, 1303, 1340
NlaIV GGNNCC 4 cut(s) 14, 661, 1000, 1248
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 535, 1159
NspV TTCGAA 1 cut(s) 1351
PagI TCATGA 2 cut(s) 106, 1240
PciSI GCTCTTC 1 cut(s) 786
PctI GAATGC 3 cut(s) 451, 550, 1347
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 2 cut(s) 158, 1360
PflFI GACNNNGTC 1 cut(s) 1532
PflMI CCANNNNNTGG 2 cut(s) 648, 1009
PleI GAGTC 2 cut(s) 467, 632
PpsI GAGTC 2 cut(s) 467, 632
PpuMI RGGWCCY 2 cut(s) 659, 1247
PsiI TTATAA 1 cut(s) 936
Psp5II RGGWCCY 2 cut(s) 659, 1247
Psp6I CCWGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
PspEI GGTNACC 1 cut(s) 434
PspGI CCWGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
PspN4I GGNNCC 4 cut(s) 14, 661, 1000, 1248
PspPI GGNCC 4 cut(s) 12, 659, 1247, 1553
PspPPI RGGWCCY 2 cut(s) 659, 1247
PstI CTGCAG 2 cut(s) 73, 265
PstNI CAGNNNCTG 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 1532
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 195, 1041
RsaNI GTAC 2 cut(s) 194, 1040
RseI CAYNNNNRTG 2 cut(s) 668, 1047
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 6 cut(s) 80, 749, 767, 801, 1232, 1503
Sau3AI GATC 4 cut(s) 43, 786, 1111, 1182
Sau96I GGNCC 4 cut(s) 12, 659, 1247, 1553
SchI GAGTC 2 cut(s) 467, 632
ScrFI CCNGG 8 cut(s) 17, 41, 310, 440, 870, 1140, 1320, 1418
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 7 cut(s) 55, 520, 542, 706, 723, 745, 1144
SfcI CTRYAG 2 cut(s) 69, 261
SfuI TTCGAA 1 cut(s) 1351
SinI GGWCC 3 cut(s) 659, 1247, 1553
SmiMI CAYNNNNRTG 2 cut(s) 668, 1047
SsiI CCGC 3 cut(s) 449, 1033, 1487
SspI AATATT 1 cut(s) 587
SspMI CTAG 1 cut(s) 878
StyD4I CCNGG 8 cut(s) 15, 39, 308, 438, 868, 1138, 1318, 1416
TaaI ACNGT 2 cut(s) 1039, 1397
TaiI ACGT 2 cut(s) 410, 1066
TaqI TCGA 3 cut(s) 789, 1267, 1351
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 2 cut(s) 158, 1360
Tru1I TTAA 6 cut(s) 80, 749, 767, 801, 1232, 1503
Tru9I TTAA 6 cut(s) 80, 749, 767, 801, 1232, 1503
TscAI CASTG 3 cut(s) 577, 907, 964
TseFI GTSAC 1 cut(s) 434
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 8 cut(s) 159, 213, 261, 267, 315, 1229, 1329, 1344
TspRI CASTG 3 cut(s) 577, 907, 964
Tth111I GACNNNGTC 1 cut(s) 1532
Van91I CCANNNNNTGG 2 cut(s) 648, 1009
VpaK11BI GGWCC 3 cut(s) 659, 1247, 1553
XapI RAATTY 3 cut(s) 319, 519, 851
XbaI TCTAGA 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 1 cut(s) 878
Zsp2I ATGCAT 2 cut(s) 535, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.