FvH4_6g06431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018052
Physical Location & Seq
Reverse (-)
3748255 .. 3749400
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06431.t1

Sequence Viewer

Length: 525 bp
ATGATTCAATACAGCAATTATTCATATCAAAGTTTCCCATCTTATGGTTATTTGTTAATATGGCAAACCCCCATGAGTGATCCAAAAGAATTGAACCTTCATCCATCAAAGGAAGCATCTTGTTCTCATTTTATATCTCATCTCCACCAAACTAAACAGGAATTCATGAACAACTCCATGGATTTTGGCCGTGTGGTTTTCGCCGCCATCGGCTTCTCTACGTCACTCGTCCTCTTCGTGCCGAATGTGAAGAAGTGGCACAGGCAACAAGTCACAACGGAGAAACTAAGGATCATCACCGAAGCGTTGGAGCATGCTGAAGAAAGGGCGGCCAAGTTTCAAGAGAGGCATGACCGTATGCTGAGTCAAATGTGCTCGTTTTACTTGACGAACAAGGAGCTCGAGGAGGCCTTGGCGGGTGCTCGAGCCGCCTCGAATGAGGCCTTGGACTTTGCTACTCAGTTGAGGAGGATGCAGTTGAAGATCATTACCTCTTTCCCAGGTGATCTGCTACTTAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.14

Weight (kDa)

7.06

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018052)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06431
prunus_persica Prupe.6G321900_v2.0.a1
pyrus_communis pycom04g17790
rosa_laevigata RLG00000025353
rosa_multiflora Rmu_sc0010428.1_g000002
rosa_roxburghii Rroxscaffold_6G00424200
rosa_rugosa Rorug03G0008300
rosa_samantha Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 44
AciI CCGC 4 cut(s) 204, 329, 416, 429
AclWI GGATC 2 cut(s) 74, 299
AcoI YGGCCR 2 cut(s) 187, 330
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 8, 94, 341, 481
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw21I GWGCWC 3 cut(s) 377, 402, 424
AlwI GGATC 2 cut(s) 74, 299
Ama87I CYCGRG 2 cut(s) 401, 423
AoxI GGCC 4 cut(s) 187, 330, 408, 441
ApoI RAATTY 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 289, 515
AvaI CYCGRG 2 cut(s) 401, 423
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 3 cut(s) 377, 402, 424
BccI CCATC 3 cut(s) 46, 112, 215
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 501
BisI GCNGC 3 cut(s) 204, 330, 429
BlsI GCNGC 3 cut(s) 205, 331, 430
Bme1390I CCNGG 1 cut(s) 501
BmeT110I CYCGRG 2 cut(s) 401, 423
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 2 cut(s) 125, 462
BsaJI CCNNGG 4 cut(s) 177, 411, 444, 499
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 4 cut(s) 177, 411, 444, 499
BseGI GGATG 2 cut(s) 100, 477
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 2 cut(s) 353, 473
BseRI GAGGAG 2 cut(s) 419, 481
BshFI GGCC 4 cut(s) 189, 332, 410, 443
BsiHKAI GWGCWC 3 cut(s) 377, 402, 424
BsiHKCI CYCGRG 2 cut(s) 401, 423
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 4 cut(s) 189, 332, 410, 443
BsoBI CYCGRG 2 cut(s) 401, 423
Bsp1286I GDGCHC 3 cut(s) 377, 402, 424
Bsp143I GATC 4 cut(s) 79, 291, 483, 505
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 4 cut(s) 204, 329, 416, 429
BspANI GGCC 4 cut(s) 189, 332, 410, 443
BspCNI CTCAG 2 cut(s) 354, 472
BspHI TCATGA 1 cut(s) 165
BspPI GGATC 2 cut(s) 74, 299
BssECI CCNNGG 4 cut(s) 177, 411, 444, 499
BssMI GATC 4 cut(s) 79, 291, 483, 505
BssT1I CCWWGG 3 cut(s) 177, 411, 444
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 287, 362, 459
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 100, 477
BstKTI GATC 4 cut(s) 82, 294, 486, 508
BstMBI GATC 4 cut(s) 79, 291, 483, 505
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 499
BsuRI GGCC 4 cut(s) 189, 332, 410, 443
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 100, 477
Cac8I GCNNGC 1 cut(s) 315
CciI TCATGA 1 cut(s) 165
CviAII CATG 5 cut(s) 73, 166, 178, 314, 350
CviJI RGCY 7 cut(s) 189, 213, 332, 400, 410, 428, 443
CviKI_1 RGCY 7 cut(s) 189, 213, 332, 400, 410, 428, 443
DdeI CTNAG 3 cut(s) 287, 362, 459
DpnI GATC 4 cut(s) 81, 293, 485, 507
DpnII GATC 4 cut(s) 79, 291, 483, 505
EaeI YGGCCR 2 cut(s) 187, 330
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 3 cut(s) 177, 411, 444
Eco147I AGGCCT 2 cut(s) 410, 443
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 401, 423
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 3 cut(s) 177, 411, 444
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 3 cut(s) 177, 411, 444
FaeI CATG 5 cut(s) 76, 169, 181, 317, 353
FatI CATG 5 cut(s) 72, 165, 177, 313, 349
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 204, 330, 429
FokI GGATG 2 cut(s) 87, 484
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 204, 330, 429
GluI GCNGC 3 cut(s) 204, 330, 429
HaeIII GGCC 4 cut(s) 189, 332, 410, 443
Hin1II CATG 5 cut(s) 76, 169, 181, 317, 353
HinfI GANTC 2 cut(s) 4, 364
HphI GGTGA 2 cut(s) 289, 515
Hpy188III TCNNGA 2 cut(s) 166, 341
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 3 cut(s) 287, 362, 459
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 5 cut(s) 76, 169, 181, 317, 353
Kzo9I GATC 4 cut(s) 79, 291, 483, 505
LmnI GCTCC 2 cut(s) 310, 397
LpnPI CCDG 4 cut(s) 143, 247, 486, 513
LweI GCATC 2 cut(s) 125, 462
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 222, 271
MalI GATC 4 cut(s) 81, 293, 485, 507
MboI GATC 4 cut(s) 79, 291, 483, 505
MboII GAAGA 4 cut(s) 226, 262, 332, 493
MhlI GDGCHC 3 cut(s) 377, 402, 424
MluCI AATT 4 cut(s) 16, 89, 161, 517
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 9 cut(s) 242, 339, 397, 400, 433, 442, 459, 462, 502
MseI TTAA 2 cut(s) 56, 516
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 428
NcoI CCATGG 1 cut(s) 177
NdeII GATC 4 cut(s) 79, 291, 483, 505
NlaIII CATG 5 cut(s) 76, 169, 181, 317, 353
NmuCI GTSAC 2 cut(s) 222, 271
NspI RCATGY 1 cut(s) 317
PaeI GCATGC 1 cut(s) 317
PaeR7I CTCGAG 2 cut(s) 401, 423
PagI TCATGA 1 cut(s) 165
PceI AGGCCT 2 cut(s) 410, 443
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 3 cut(s) 205, 331, 430
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspXI VCTCGAGB 2 cut(s) 401, 423
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 56, 516
SatI GCNGC 3 cut(s) 204, 330, 429
Sau3AI GATC 4 cut(s) 79, 291, 483, 505
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 3 cut(s) 377, 402, 424
SetI ASST 5 cut(s) 99, 224, 402, 494, 505
SfaNI GCATC 2 cut(s) 125, 462
Sfr274I CTCGAG 2 cut(s) 401, 423
SlaI CTCGAG 2 cut(s) 401, 423
SmlI CTYRAG 2 cut(s) 401, 423
SmoI CTYRAG 2 cut(s) 401, 423
SphI GCATGC 1 cut(s) 317
Sse9I AATT 4 cut(s) 16, 89, 161, 517
SseBI AGGCCT 2 cut(s) 410, 443
SsiI CCGC 4 cut(s) 204, 329, 416, 429
SstI GAGCTC 1 cut(s) 402
StuI AGGCCT 2 cut(s) 410, 443
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 3 cut(s) 177, 411, 444
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 402, 424, 434
TasI AATT 4 cut(s) 16, 89, 161, 517
TauI GCSGC 3 cut(s) 206, 332, 431
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 56, 516
Tru9I TTAA 2 cut(s) 56, 516
TseFI GTSAC 2 cut(s) 222, 271
Tsp45I GTSAC 2 cut(s) 222, 271
TspDTI ATGAA 4 cut(s) 12, 89, 154, 182
TspGWI ACGGA 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 317
XhoI CTCGAG 2 cut(s) 401, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.