Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010428.1

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Forward (+)

12366 .. 12725

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010428.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaagaactccatggattatagccatgtggttttcaccgtcatcggcttctctacctcactcatcttcttcgtgccgactgtgaagaagtggcgcaggcaacaagtcatgacggagaaactagggatcatcactgaagcgttagagcaagccgaagaaagagcggccaagtttcaagaaagacatgaccgtgtgttgagccaaatgtgcacgttttacttgacgaacaaggagctcgaggaggccttggccggtgctcgagctgctgcgaatgaggccgtggactttgctgctcagttgaggaggatgcagttgagcgtcatcagctctttcccaggtgatcagctacttaatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

119

Amino Acids

13.56

Weight (kDa)

6.73

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	165, 249
AcuI	CTGAAG	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	235, 263, 327, 346
AluI	AGCT	4 cut(s)	235, 263, 327, 346
Alw21I	GWGCWC	3 cut(s)	212, 237, 259
Alw44I	GTGCAC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	2 cut(s)	236, 258
AoxI	GGCC	4 cut(s)	165, 243, 249, 276
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	263, 266, 290
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	28, 350
AvaI	CYCGRG	2 cut(s)	236, 258
BaeGI	GKGCMC	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	237
Bbv12I	GWGCWC	3 cut(s)	212, 237, 259
BbvI	GCAGC	3 cut(s)	250, 253, 277
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	4 cut(s)	165, 264, 267, 291
BlsI	GCNGC	4 cut(s)	166, 265, 268, 292
Bme1390I	CCNGG	1 cut(s)	336
BmeT110I	CYCGRG	2 cut(s)	236, 258
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	12, 246, 279, 334
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	4 cut(s)	12, 246, 279, 334
BseGI	GGATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	254, 316
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	250, 253, 277
BshFI	GGCC	4 cut(s)	167, 245, 251, 278
BsiHKAI	GWGCWC	3 cut(s)	212, 237, 259
BsiHKCI	CYCGRG	2 cut(s)	236, 258
BsiSI	CCGG	1 cut(s)	252
BsnI	GGCC	4 cut(s)	167, 245, 251, 278
BsoBI	CYCGRG	2 cut(s)	236, 258
Bsp1286I	GDGCHC	3 cut(s)	212, 237, 259
Bsp143I	GATC	2 cut(s)	126, 340
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	4 cut(s)	167, 245, 251, 278
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	108
BspPI	GGATC	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	12, 246, 279, 334
BssMI	GATC	2 cut(s)	126, 340
BssT1I	CCWWGG	2 cut(s)	12, 246
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	40, 82, 191
BstC8I	GCNNGC	2 cut(s)	98, 150
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	12, 279
BstF5I	GGATG	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	129, 343
BstMBI	GATC	2 cut(s)	126, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 263, 275, 324
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	250, 253, 277
BsuRI	GGCC	4 cut(s)	167, 245, 251, 278
BtgI	CCRYGG	2 cut(s)	12, 279
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	98, 150
CciI	TCATGA	1 cut(s)	108
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	251
CseI	GACGC	1 cut(s)	307
CviAII	CATG	4 cut(s)	13, 26, 109, 185
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	128, 342
DpnII	GATC	2 cut(s)	126, 340
EaeI	YGGCCR	2 cut(s)	165, 249
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	12, 246
Eco147I	AGGCCT	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	2 cut(s)	236, 258
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	12, 246
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	12, 246
FaeI	CATG	4 cut(s)	16, 29, 112, 188
FaiI	YATR	6 cut(s)	14, 21, 27, 110, 186, 358
FatI	CATG	4 cut(s)	12, 25, 108, 184
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	165, 264, 267, 291
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	165, 264, 267, 291
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	165, 264, 267, 291
HaeIII	GGCC	4 cut(s)	167, 245, 251, 278
HapII	CCGG	1 cut(s)	252
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	16, 29, 112, 188
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	28, 350
Hpy166II	GTNNAC	2 cut(s)	210, 283
Hpy188III	TCNNGA	2 cut(s)	109, 176
Hpy8I	GTNNAC	2 cut(s)	210, 283
HpyCH4III	ACNGT	3 cut(s)	40, 82, 191
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	210, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 263, 275, 324
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	16, 29, 112, 188
HspAI	GCGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	126, 340
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	4 cut(s)	82, 265, 321, 348
Lsp1109I	GCAGC	3 cut(s)	250, 253, 277
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	212
MalI	GATC	2 cut(s)	128, 342
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	126, 340
MboII	GAAGA	5 cut(s)	16, 58, 61, 97, 167
MhlI	GDGCHC	3 cut(s)	212, 237, 259
MluCI	AATT	1 cut(s)	352
MnlI	CCTC	6 cut(s)	67, 232, 235, 268, 294, 297
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	207, 263, 275, 324
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	126, 340
NlaIII	CATG	4 cut(s)	16, 29, 112, 188
PaeR7I	CTCGAG	2 cut(s)	236, 258
PagI	TCATGA	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	245
PkrI	GCNGC	4 cut(s)	166, 265, 268, 292
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspXI	VCTCGAGB	2 cut(s)	236, 258
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	4 cut(s)	165, 264, 267, 291
Sau3AI	GATC	2 cut(s)	126, 340
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	3 cut(s)	212, 237, 259
SetI	ASST	7 cut(s)	59, 215, 237, 265, 329, 340, 348
SfaNI	GCATC	1 cut(s)	297
Sfr274I	CTCGAG	2 cut(s)	236, 258
SlaI	CTCGAG	2 cut(s)	236, 258
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	236, 258
SmoI	CTYRAG	2 cut(s)	236, 258
Sse9I	AATT	1 cut(s)	352
SseBI	AGGCCT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	12, 246
TaaI	ACNGT	3 cut(s)	40, 82, 191
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	237, 259
TasI	AATT	1 cut(s)	352
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	263, 266, 290
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	208
XhoI	CTCGAG	2 cut(s)	236, 258
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.