Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Forward (+)

45392621 .. 45392989

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00424200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCATGCATGAAGAACTCCATGGATTATAGCCATGTGGTTTTCACCGTCATCGGCTTCTCTACCTCACTCATCTTCTTCGTGCCGACTGTGAAGAAGTGGCGCAGGCAACAAGTCATGACGGAGAAACTAAGGATCATCACTGAAGCGTTAGAGCAAGCCGAAGAAAGGGCGGCCAAGTTTCAAGAAAGACATGACCGTATGTTGAGTCAAATGTGCACGTTTTACTTGACGAACAAGGAGCTCGAGGCGGCCTTGGCCGGTGCTCGAGCCGCTGCGAATGAGGCCGTGGACTTTGCTGCTCAGTTGAGGAGGATGCAGTTGAGCGTCATCAGCTCTTTCCCAGGTGATCAGCTACTTAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

8.68

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	173, 251, 273
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	2 cut(s)	174, 258
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	3 cut(s)	244, 336, 355
AluI	AGCT	3 cut(s)	244, 336, 355
Alw21I	GWGCWC	3 cut(s)	221, 246, 268
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	2 cut(s)	245, 267
AoxI	GGCC	4 cut(s)	174, 252, 258, 285
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	275, 299
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	37, 359
AvaI	CYCGRG	2 cut(s)	245, 267
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	221, 246, 268
BbvI	GCAGC	2 cut(s)	262, 286
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	349
BisI	GCNGC	5 cut(s)	174, 252, 273, 276, 300
BlsI	GCNGC	5 cut(s)	175, 253, 274, 277, 301
Bme1390I	CCNGG	1 cut(s)	345
BmeT110I	CYCGRG	2 cut(s)	245, 267
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	21, 255, 288, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	21, 255, 288, 343
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	262, 286
BshFI	GGCC	4 cut(s)	176, 254, 260, 287
BsiHKAI	GWGCWC	3 cut(s)	221, 246, 268
BsiHKCI	CYCGRG	2 cut(s)	245, 267
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	168
BsnI	GGCC	4 cut(s)	176, 254, 260, 287
BsoBI	CYCGRG	2 cut(s)	245, 267
Bsp1286I	GDGCHC	3 cut(s)	221, 246, 268
Bsp143I	GATC	2 cut(s)	135, 349
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	173, 251, 273
BspANI	GGCC	4 cut(s)	176, 254, 260, 287
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	117
BspPI	GGATC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	4 cut(s)	21, 255, 288, 343
BssMI	GATC	2 cut(s)	135, 349
BssT1I	CCWWGG	2 cut(s)	21, 255
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	49, 91, 200
BstC8I	GCNNGC	2 cut(s)	107, 159
BstDEI	CTNAG	2 cut(s)	131, 303
BstDSI	CCRYGG	2 cut(s)	21, 288
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	138, 352
BstMBI	GATC	2 cut(s)	135, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 272, 284, 333
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	262, 286
BsuRI	GGCC	4 cut(s)	176, 254, 260, 287
BtgI	CCRYGG	2 cut(s)	21, 288
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	107, 159
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	260
CseI	GACGC	1 cut(s)	316
CviAII	CATG	6 cut(s)	6, 10, 22, 35, 118, 194
DdeI	CTNAG	2 cut(s)	131, 303
DpnI	GATC	2 cut(s)	137, 351
DpnII	GATC	2 cut(s)	135, 349
EaeI	YGGCCR	2 cut(s)	174, 258
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	21, 255
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	245, 267
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	21, 255
EcoT22I	ATGCAT	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	21, 255
FaeI	CATG	6 cut(s)	9, 13, 25, 38, 121, 197
FaiI	YATR	9 cut(s)	7, 11, 23, 30, 36, 119, 195, 203, 367
FatI	CATG	6 cut(s)	5, 9, 21, 34, 117, 193
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	174, 252, 273, 276, 300
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	5 cut(s)	174, 252, 273, 276, 300
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	5 cut(s)	174, 252, 273, 276, 300
HaeIII	GGCC	4 cut(s)	176, 254, 260, 287
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	9, 13, 25, 38, 121, 197
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	37, 359
Hpy166II	GTNNAC	2 cut(s)	219, 292
Hpy188III	TCNNGA	2 cut(s)	118, 185
Hpy8I	GTNNAC	2 cut(s)	219, 292
HpyCH4III	ACNGT	3 cut(s)	49, 91, 200
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	9, 219, 319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 272, 284, 333
HpyF3I	CTNAG	2 cut(s)	131, 303
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	6 cut(s)	9, 13, 25, 38, 121, 197
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	135, 349
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	4 cut(s)	91, 274, 330, 357
Lsp1109I	GCAGC	2 cut(s)	262, 286
LweI	GCATC	1 cut(s)	306
MaeII	ACGT	1 cut(s)	221
MalI	GATC	2 cut(s)	137, 351
MboI	GATC	2 cut(s)	135, 349
MboII	GAAGA	5 cut(s)	25, 67, 70, 106, 176
MhlI	GDGCHC	3 cut(s)	221, 246, 268
MluCI	AATT	1 cut(s)	361
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	76, 241, 277, 303, 306
Mph1103I	ATGCAT	1 cut(s)	11
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	4 cut(s)	257, 272, 284, 333
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	135, 349
NlaIII	CATG	6 cut(s)	9, 13, 25, 38, 121, 197
NsiI	ATGCAT	1 cut(s)	11
PaeR7I	CTCGAG	2 cut(s)	245, 267
PagI	TCATGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	175, 253, 274, 277, 301
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspXI	VCTCGAGB	2 cut(s)	245, 267
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	174, 252, 273, 276, 300
Sau3AI	GATC	2 cut(s)	135, 349
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	3 cut(s)	221, 246, 268
SetI	ASST	6 cut(s)	68, 224, 246, 338, 349, 357
SfaNI	GCATC	1 cut(s)	306
Sfr274I	CTCGAG	2 cut(s)	245, 267
SlaI	CTCGAG	2 cut(s)	245, 267
SmlI	CTYRAG	2 cut(s)	245, 267
SmoI	CTYRAG	2 cut(s)	245, 267
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	3 cut(s)	173, 251, 273
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	21, 255
TaaI	ACNGT	3 cut(s)	49, 91, 200
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	246, 268
TasI	AATT	1 cut(s)	361
TauI	GCSGC	3 cut(s)	176, 254, 275
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	275, 299
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	217
XhoI	CTCGAG	2 cut(s)	245, 267
Zsp2I	ATGCAT	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.