Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Forward (+)

28433923 .. 28434626

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATCTCCATGGATTTCAGTCATGTAATTTTCGCCGTAATCGGTTTCTCTTCCTCCATCTTCTTCTTCGTGCCGAATATAAAGAAATGGCACATGCAACAAGTCACAACAGAAAAATTAAGGATTGTTAATGAAGCACTGGAGCAAGCTGAAGAGAGGGCAGCGAGGTTTCAAGAAAGGCATGACCGAATTCTAAGCCAGATATGCTCATTTTACTTGATAAATAAGGAGCTGGAGGATGCCTTGGCCGGTGCTCGGGCCACCATGAGGGAAGCATTGGAATTTGCTGCTAATTTGAGGAGGTTGCAAATGAAGATCATTACTTCTTTCCCAAGTGATCAGCTTATAGTCATGGCAGCAGAGTCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

124

Amino Acids

14.14

Weight (kDa)

6.29

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	189, 281
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	2 cut(s)	255, 267
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	3 cut(s)	149, 232, 343
AluI	AGCT	3 cut(s)	149, 232, 343
Alw21I	GWGCWC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	2 cut(s)	246, 258
ApeKI	GCWGC	3 cut(s)	161, 287, 356
ApoI	RAATTY	2 cut(s)	189, 281
AspS9I	GGNCC	1 cut(s)	258
AvaI	CYCGRG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	173, 274, 368
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	337
BisI	GCNGC	3 cut(s)	162, 288, 357
BlsI	GCNGC	3 cut(s)	163, 289, 358
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	161, 254
BsaJI	CCNNGG	2 cut(s)	9, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 267
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	9, 243
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	255, 267
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	173, 274, 368
BshFI	GGCC	2 cut(s)	248, 260
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	255, 267
BsnI	GGCC	2 cut(s)	248, 260
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	3, 315, 337
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	2 cut(s)	248, 260
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	9, 243
BssMI	GATC	3 cut(s)	3, 315, 337
BssT1I	CCWWGG	2 cut(s)	9, 243
Bst6I	CTCTTC	2 cut(s)	55, 147
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	3 cut(s)	6, 318, 340
BstMBI	GATC	3 cut(s)	3, 315, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	173, 274, 368
BsuRI	GGCC	2 cut(s)	248, 260
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	258
CviAII	CATG	6 cut(s)	10, 23, 94, 182, 265, 352
CviJI	RGCY	6 cut(s)	149, 198, 232, 248, 260, 343
CviKI_1	RGCY	6 cut(s)	149, 198, 232, 248, 260, 343
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	3 cut(s)	5, 317, 339
DpnII	GATC	3 cut(s)	3, 315, 337
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	55, 147
EarI	CTCTTC	2 cut(s)	55, 147
Eco130I	CCWWGG	2 cut(s)	9, 243
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	9, 243
ErhI	CCWWGG	2 cut(s)	9, 243
FaeI	CATG	6 cut(s)	13, 26, 97, 185, 268, 355
FaiI	YATR	9 cut(s)	11, 24, 80, 95, 183, 205, 266, 347, 353
FatI	CATG	6 cut(s)	9, 22, 93, 181, 264, 351
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	162, 288, 357
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	162, 288, 357
GluI	GCNGC	3 cut(s)	162, 288, 357
GsuI	CTGGAG	2 cut(s)	161, 254
HaeIII	GGCC	2 cut(s)	248, 260
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	6 cut(s)	13, 26, 97, 185, 268, 355
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	97, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	6 cut(s)	13, 26, 97, 185, 268, 355
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	3, 315, 337
LmnI	GCTCC	2 cut(s)	142, 229
LpnPI	CCDG	5 cut(s)	125, 212, 218, 262, 351
Lsp1109I	GCAGC	3 cut(s)	173, 274, 368
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	3 cut(s)	5, 317, 339
MboI	GATC	3 cut(s)	3, 315, 337
MboII	GAAGA	6 cut(s)	42, 52, 55, 58, 164, 325
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	5 cut(s)	27, 116, 189, 281, 292
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	7 cut(s)	64, 150, 159, 229, 261, 291, 294
MseI	TTAA	3 cut(s)	119, 129, 370
MspI	CCGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	3, 315, 337
NlaIII	CATG	6 cut(s)	13, 26, 97, 185, 268, 355
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	163, 289, 358
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	119, 129, 370
SatI	GCNGC	3 cut(s)	162, 288, 357
Sau3AI	GATC	3 cut(s)	3, 315, 337
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	6 cut(s)	151, 170, 234, 305, 345, 370
SfaNI	GCATC	1 cut(s)	229
Sse9I	AATT	5 cut(s)	27, 116, 189, 281, 292
StyI	CCWWGG	2 cut(s)	9, 243
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	27, 116, 189, 281, 292
Tru1I	TTAA	3 cut(s)	119, 129, 370
Tru9I	TTAA	3 cut(s)	119, 129, 370
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	161, 287, 356
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	147, 326
TspRI	CASTG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	189, 281
XceI	RCATGY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.