Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Reverse (-)

4700645 .. 4701007

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATTATAGCCATGTGGTTTTCACCGTCATCGGCCTCTCTACCTCACTCATCTTCTTCGTGCCGACTGTGAAGAAGTGGCGCAGGCAACAAGTCATGACGGAGAAACTAAGGATCATCACTGAAGCGTTAGAGCAAGCCGACGAAAGAGCGGCCAAGTTTCAAGAAAGACATGACCGTATGTTGAGTCAAATGTGCACGTTTTACTTGACGAACAAGGAGCTCGAGGAGGCCTTGGCCGGTGCACGAGCTGCTGCGAATGAGGCCGTGGACTTTGCTGCTCGGTTGAGGAGGATGCAGTTGAGCGTCATCAGCTCTTTCCCAGGTGATCAGCTACTCAATTTATCACATACTTGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

120

Amino Acids

13.75

Weight (kDa)

7.83

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	153, 237
AcuI	CTGAAG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	4 cut(s)	223, 251, 315, 334
AluI	AGCT	4 cut(s)	223, 251, 315, 334
Alw21I	GWGCWC	3 cut(s)	200, 225, 247
Alw44I	GTGCAC	2 cut(s)	196, 243
AlwI	GGATC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	5 cut(s)	34, 153, 231, 237, 264
ApaLI	GTGCAC	2 cut(s)	196, 243
ApeKI	GCWGC	3 cut(s)	251, 254, 278
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	16, 338
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	2 cut(s)	200, 247
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	200, 225, 247
BbvI	GCAGC	3 cut(s)	238, 241, 265
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	1 cut(s)	328
BisI	GCNGC	4 cut(s)	153, 252, 255, 279
BlsI	GCNGC	4 cut(s)	154, 253, 256, 280
Bme1390I	CCNGG	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	234, 267, 322
Bse118I	RCCGGY	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	234, 267, 322
BseGI	GGATG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	242, 304
BseSI	GKGCMC	2 cut(s)	200, 247
BseXI	GCAGC	3 cut(s)	238, 241, 265
BshFI	GGCC	5 cut(s)	36, 155, 233, 239, 266
BsiHKAI	GWGCWC	3 cut(s)	200, 225, 247
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	240
BsnI	GGCC	5 cut(s)	36, 155, 233, 239, 266
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	200, 225, 247
Bsp143I	GATC	2 cut(s)	114, 328
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	5 cut(s)	36, 155, 233, 239, 266
BspHI	TCATGA	1 cut(s)	96
BspPI	GGATC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	239
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	234, 267, 322
BssMI	GATC	2 cut(s)	114, 328
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	28, 70, 179
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	86, 138
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	117, 331
BstMBI	GATC	2 cut(s)	114, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 263, 312
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstSLI	GKGCMC	2 cut(s)	200, 247
BstV1I	GCAGC	3 cut(s)	238, 241, 265
BsuRI	GGCC	5 cut(s)	36, 155, 233, 239, 266
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	86, 138
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	239
CseI	GACGC	1 cut(s)	295
CviAII	CATG	3 cut(s)	14, 97, 173
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	2 cut(s)	116, 330
DpnII	GATC	2 cut(s)	114, 328
EaeI	YGGCCR	2 cut(s)	153, 237
Ecl136II	GAGCTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	17, 100, 176
FaiI	YATR	8 cut(s)	9, 15, 98, 174, 182, 351, 359, 361
FatI	CATG	3 cut(s)	13, 96, 172
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	4 cut(s)	153, 252, 255, 279
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	153, 252, 255, 279
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	4 cut(s)	153, 252, 255, 279
HaeIII	GGCC	5 cut(s)	36, 155, 233, 239, 266
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	17, 100, 176
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	16, 338
Hpy166II	GTNNAC	3 cut(s)	198, 245, 271
Hpy188III	TCNNGA	2 cut(s)	97, 164
Hpy8I	GTNNAC	3 cut(s)	198, 245, 271
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	28, 70, 179
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	198, 245, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 263, 312
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	17, 100, 176
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	114, 328
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	4 cut(s)	70, 253, 309, 336
Lsp1109I	GCAGC	3 cut(s)	238, 241, 265
LweI	GCATC	1 cut(s)	285
MaeII	ACGT	1 cut(s)	200
MalI	GATC	2 cut(s)	116, 330
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	114, 328
MboII	GAAGA	3 cut(s)	46, 49, 85
MhlI	GDGCHC	3 cut(s)	200, 225, 247
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	47, 55, 220, 223, 256, 282, 285
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	251, 263, 312
NdeII	GATC	2 cut(s)	114, 328
NlaIII	CATG	3 cut(s)	17, 100, 176
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	154, 253, 256, 280
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspXI	VCTCGAGB	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	225
SatI	GCNGC	4 cut(s)	153, 252, 255, 279
Sau3AI	GATC	2 cut(s)	114, 328
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	200, 225, 247
SetI	ASST	7 cut(s)	47, 203, 225, 253, 317, 328, 336
SfaNI	GCATC	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	340
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	225
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	28, 70, 179
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	155
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	251, 254, 278
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	127
VneI	GTGCAC	2 cut(s)	196, 243
XhoI	CTCGAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.