Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Forward (+)

20048502 .. 20048882

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACACCAACTCCATGGATTTCGGCCGCGTAATTTTCGCCCTAATCGGCTTCTCCTCCTCGCTCTTCTTCTTCGTGCCAAACGTCAAGAGTTGGCGTACGCAACAAGTAACGACTGAAAAACTGAGGATCATCGGTGAAGCATTGAAGCAAGCGGAAAAAAGGGCGACGAGGTTTCAAGAGAGGCACGACCGAATTTTACGTCAGATATCCTCGTTCTACTTGATAAATAAGGAGCTCGAGGGGGCGTTGGCCGATGCTCGGGCTGCGATGAATGAAGCTTTGGAGTTTGCTGCAAATTTGAGGAAGTTGCAGATGAAGATCATTAGCTCTTTCCCAAGCGATGATCAGATTGTAGACATGACAACACATGCAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

127

Amino Acids

14.39

Weight (kDa)

9.51

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	28, 155
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	2 cut(s)	25, 252
AcsI	RAATTY	2 cut(s)	195, 298
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	148, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	238, 281, 330
AluI	AGCT	3 cut(s)	238, 281, 330
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	2 cut(s)	239, 261
AoxI	GGCC	2 cut(s)	25, 252
ApeKI	GCWGC	2 cut(s)	266, 293
ApoI	RAATTY	2 cut(s)	195, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	239, 261
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	253, 280
BclI	TGATCA	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	28, 267, 294
BlsI	GCNGC	3 cut(s)	29, 268, 295
BmeT110I	CYCGRG	2 cut(s)	239, 261
BmsI	GCATC	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	15
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	46, 49
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	253, 280
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	2 cut(s)	28, 193
BshFI	GGCC	2 cut(s)	27, 254
BsiEI	CGRYCG	2 cut(s)	28, 193
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	239, 261
BsiWI	CGTACG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	261
BsnI	GGCC	2 cut(s)	27, 254
BsoBI	CYCGRG	2 cut(s)	239, 261
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	129, 321, 346
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	28, 155
BspANI	GGCC	2 cut(s)	27, 254
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	129, 321, 346
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	132, 324, 349
BstMBI	GATC	3 cut(s)	129, 321, 346
BstMCI	CGRYCG	2 cut(s)	28, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	374
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	253, 280
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	27, 254
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	2 cut(s)	284, 357
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	3 cut(s)	16, 361, 371
CviJI	RGCY	7 cut(s)	27, 51, 238, 254, 266, 281, 330
CviKI_1	RGCY	7 cut(s)	27, 51, 238, 254, 266, 281, 330
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	131, 323, 348
DpnII	GATC	3 cut(s)	129, 321, 346
EaeI	YGGCCR	2 cut(s)	25, 252
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	239, 261
EcoICRI	GAGCTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	19, 364, 374
FaiI	YATR	3 cut(s)	17, 362, 372
FatI	CATG	3 cut(s)	15, 360, 370
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	28, 267, 294
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	28, 267, 294
GluI	GCNGC	3 cut(s)	28, 267, 294
HaeIII	GGCC	2 cut(s)	27, 254
Hin1II	CATG	3 cut(s)	19, 364, 374
HindIII	AAGCTT	1 cut(s)	279
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	207, 351
Hpy188III	TCNNGA	2 cut(s)	88, 179
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	172
HpyCH4IV	ACGT	2 cut(s)	84, 202
HpyCH4V	TGCA	3 cut(s)	296, 313, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	84, 202
Hsp92II	CATG	3 cut(s)	19, 364, 374
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	129, 321, 346
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	253, 280
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	84, 202
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	131, 323, 348
MboI	GATC	3 cut(s)	129, 321, 346
MboII	GAAGA	4 cut(s)	58, 61, 64, 331
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	3 cut(s)	33, 195, 298
MnlI	CCTC	8 cut(s)	67, 70, 120, 165, 177, 223, 235, 297
MseI	TTAA	1 cut(s)	379
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	129, 321, 346
NlaIII	CATG	3 cut(s)	19, 364, 374
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
Pfl23II	CGTACG	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	29, 268, 295
Psp124BI	GAGCTC	1 cut(s)	240
PspLI	CGTACG	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	239
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	379
SatI	GCNGC	3 cut(s)	28, 267, 294
Sau3AI	GATC	3 cut(s)	129, 321, 346
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	87, 176, 205, 240, 283, 332, 379
SfaNI	GCATC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	33, 195, 298
SsiI	CCGC	2 cut(s)	28, 155
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	2 cut(s)	87, 205
TaqI	TCGA	1 cut(s)	240
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	33, 195, 298
TauI	GCSGC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseI	GCWGC	2 cut(s)	266, 293
TspDTI	ATGAA	4 cut(s)	17, 287, 291, 332
XapI	RAATTY	2 cut(s)	195, 298
XceI	RCATGY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.