Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018052

Physical Location & Seq

Genomic Coordinates Forward (+)

45239872 .. 45240324

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGTAATCCAAAAGAATTGAACCTCCATCCATTAAAGGAAGCATCTTGTTCTCATTTTATATCTCATCTCCACCAAACTAAACCGGATGTCATGAAGAACTCCATGGATTATAGCCATGTGGTTTTCGCCGCCATTGGCTTCTCTGCCTCACTCATCCTCTTGGTGCCGAATGTGAAGAAGTGGCACAGGCAACAAGTCACGACGGAGAAACTAAGGATCATTACTGAAGCGTTAGAGCAAGCCGAAGAAAGGGCGGCCAAGTTTCAAGAAAGACATGACCGTATGTTGAGTCAAATGTGCTCGTTTTACTTGACGAACAAGGAGCTCGAGGAGGCCTTGGCCGGTGCTCGAGCCGCCGCGAATGAGGCAGTGGACTTTGCTGCTCAGCTGAGGAAGATGCAGTTGAGAGTCATTAGCTCTTTCCCAGGTGATCAGCTACTTAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

151

Amino Acids

17.04

Weight (kDa)

7.79

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018052)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g06431
prunus_persica	Prupe.6G321900_v2.0.a1
pyrus_communis	pycom04g17790
rosa_laevigata	RLG00000025353
rosa_multiflora	Rmu_sc0010428.1_g000002
rosa_roxburghii	Rroxscaffold_6G00424200
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067600 Rh3BG070000 Rh3CG068500 Rh3DG070100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	362
AciI	CCGC	4 cut(s)	132, 257, 357, 360
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	2 cut(s)	258, 342
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	22, 269
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	4 cut(s)	328, 391, 420, 439
AluI	AGCT	4 cut(s)	328, 391, 420, 439
Alw21I	GWGCWC	3 cut(s)	305, 330, 352
AlwI	GGATC	1 cut(s)	227
Ama87I	CYCGRG	2 cut(s)	329, 351
AoxI	GGCC	3 cut(s)	258, 336, 342
ApeKI	GCWGC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	443
AvaI	CYCGRG	2 cut(s)	329, 351
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	3 cut(s)	305, 330, 352
BbvCI	CCTCAGC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	1 cut(s)	433
BisI	GCNGC	5 cut(s)	132, 258, 357, 360, 384
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	5 cut(s)	133, 259, 358, 361, 385
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	2 cut(s)	329, 351
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	53, 390
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	3 cut(s)	105, 339, 427
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	105, 339, 427
BseGI	GGATG	3 cut(s)	28, 94, 156
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	383, 401
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	3 cut(s)	260, 338, 344
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	3 cut(s)	305, 330, 352
BsiHKCI	CYCGRG	2 cut(s)	329, 351
BsiSI	CCGG	2 cut(s)	86, 345
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	3 cut(s)	260, 338, 344
BsoBI	CYCGRG	2 cut(s)	329, 351
Bsp1286I	GDGCHC	3 cut(s)	305, 330, 352
Bsp143I	GATC	2 cut(s)	219, 433
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	4 cut(s)	132, 257, 357, 360
BspANI	GGCC	3 cut(s)	260, 338, 344
BspCNI	CTCAG	2 cut(s)	384, 400
BspFNI	CGCG	1 cut(s)	362
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	105, 339, 427
BssMI	GATC	2 cut(s)	219, 433
BssT1I	CCWWGG	2 cut(s)	105, 339
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	215, 387, 392
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	28, 94, 156
BstFNI	CGCG	1 cut(s)	362
BstKTI	GATC	2 cut(s)	222, 436
BstMBI	GATC	2 cut(s)	219, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 368
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	370
BsuRI	GGCC	3 cut(s)	260, 338, 344
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	28, 94, 156
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	344
CviAII	CATG	4 cut(s)	94, 106, 119, 278
DdeI	CTNAG	3 cut(s)	215, 387, 392
DpnI	GATC	2 cut(s)	221, 435
DpnII	GATC	2 cut(s)	219, 433
EaeI	YGGCCR	2 cut(s)	258, 342
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	105, 339
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	329, 351
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	2 cut(s)	105, 339
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	105, 339
FaeI	CATG	4 cut(s)	97, 109, 122, 281
FaiI	YATR	7 cut(s)	62, 95, 107, 114, 120, 279, 287
FatI	CATG	4 cut(s)	93, 105, 118, 277
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	5 cut(s)	132, 258, 357, 360, 384
FokI	GGATG	3 cut(s)	15, 101, 143
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	5 cut(s)	132, 258, 357, 360, 384
GluI	GCNGC	5 cut(s)	132, 258, 357, 360, 384
HaeIII	GGCC	3 cut(s)	260, 338, 344
HapII	CCGG	2 cut(s)	86, 345
Hin1II	CATG	4 cut(s)	97, 109, 122, 281
HinfI	GANTC	2 cut(s)	292, 411
HpaII	CCGG	2 cut(s)	86, 345
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188III	TCNNGA	3 cut(s)	94, 202, 269
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 368
HpyF3I	CTNAG	3 cut(s)	215, 387, 392
Hsp92II	CATG	4 cut(s)	97, 109, 122, 281
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	219, 433
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	99, 175, 358, 414, 441
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	53, 390
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	221, 435
MboI	GATC	2 cut(s)	219, 433
MboII	GAAGA	4 cut(s)	109, 190, 260, 409
MhlI	GDGCHC	3 cut(s)	305, 330, 352
MluCI	AATT	2 cut(s)	17, 445
MlyI	GAGTC	2 cut(s)	301, 420
MnlI	CCTC	7 cut(s)	35, 160, 170, 325, 328, 361, 387
MseI	TTAA	2 cut(s)	35, 444
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	2 cut(s)	86, 345
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	356, 368
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	219, 433
NlaIII	CATG	4 cut(s)	97, 109, 122, 281
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	199
PaeR7I	CTCGAG	2 cut(s)	329, 351
PagI	TCATGA	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	133, 259, 358, 361, 385
PleI	GAGTC	2 cut(s)	300, 419
PpsI	GAGTC	2 cut(s)	300, 419
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	168
PspXI	VCTCGAGB	2 cut(s)	329, 351
PvuII	CAGCTG	1 cut(s)	391
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	35, 444
SatI	GCNGC	5 cut(s)	132, 258, 357, 360, 384
Sau3AI	GATC	2 cut(s)	219, 433
SchI	GAGTC	2 cut(s)	301, 420
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	3 cut(s)	305, 330, 352
SetI	ASST	6 cut(s)	27, 330, 393, 422, 433, 441
SfaNI	GCATC	2 cut(s)	53, 390
Sfr274I	CTCGAG	2 cut(s)	329, 351
SlaI	CTCGAG	2 cut(s)	329, 351
SmlI	CTYRAG	2 cut(s)	329, 351
SmoI	CTYRAG	2 cut(s)	329, 351
Sse9I	AATT	2 cut(s)	17, 445
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	4 cut(s)	132, 257, 357, 360
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	2 cut(s)	105, 339
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	330, 352
TasI	AATT	2 cut(s)	17, 445
TauI	GCSGC	4 cut(s)	134, 260, 359, 362
Tru1I	TTAA	2 cut(s)	35, 444
Tru9I	TTAA	2 cut(s)	35, 444
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	378
XhoI	CTCGAG	2 cut(s)	329, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.