NHL repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56500 AT1G56500 AT1G56500 |
| fragaria_vesca | FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 |
| malus_domestica | MD12G1204700.v1.1 |
| prunus_persica | Prupe.6G311900_v2.0.a1 |
| pyrus_communis | pycom12g19260 |
| rosa_chinensis | RchiOBHm_Chr3g0457281 |
| rosa_laevigata | RLG00000025237 |
| rosa_multiflora | Rmu_co8517633.1_g000003 Rmu_sc0005442.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00422020 Rroxscaffold_6G00422050 |
| rosa_rugosa | Rorug03G0019600 |
| rosa_samantha | Rh3AG079700 Rh3BG081400 Rh3CG081800 Rh3DG083400 |
| rosa_wichuraiana | Rw3G006870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2755 |
| Acc65I | GGTACC | 1 cut(s) | 3133 |
| AccB1I | GGYRCC | 2 cut(s) | 500, 3133 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 482 |
| AccI | GTMKAC | 1 cut(s) | 1909 |
| AccII | CGCG | 2 cut(s) | 296, 2531 |
| AciI | CCGC | 7 cut(s) | 26, 294, 296, 1645, 1843, 2531, 2972 |
| AclI | AACGTT | 1 cut(s) | 195 |
| AclWI | GGATC | 9 cut(s) | 1329, 1659, 1742, 2272, 2398, 2408, 2558, 2978, 3022 |
| AcoI | YGGCCR | 5 cut(s) | 3, 1580, 1690, 2175, 2179 |
| AcsI | RAATTY | 6 cut(s) | 373, 1268, 1573, 1870, 2190, 2304 |
| AcuI | CTGAAG | 2 cut(s) | 2490, 2928 |
| AdeI | CACNNNGTG | 1 cut(s) | 2495 |
| AfeI | AGCGCT | 1 cut(s) | 2272 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 135, 356, 482, 1944, 2595, 2993 |
| AflII | CTTAAG | 1 cut(s) | 2731 |
| AjnI | CCWGG | 3 cut(s) | 1233, 1780, 1956 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1011, 1043 |
| Alw21I | GWGCWC | 1 cut(s) | 264 |
| Alw26I | GTCTC | 4 cut(s) | 235, 320, 2677, 3031 |
| AlwI | GGATC | 9 cut(s) | 1329, 1659, 1742, 2272, 2398, 2408, 2558, 2978, 3022 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 482, 1957, 2000, 3056 |
| Aor51HI | AGCGCT | 1 cut(s) | 2272 |
| ApaI | GGGCCC | 1 cut(s) | 1605 |
| ApeKI | GCWGC | 9 cut(s) | 428, 593, 596, 683, 755, 992, 1250, 1673, 3233 |
| ApoI | RAATTY | 6 cut(s) | 373, 1268, 1573, 1870, 2190, 2304 |
| AseI | ATTAAT | 1 cut(s) | 3069 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 440, 859, 1488, 2464, 2475 |
| Asp718I | GGTACC | 1 cut(s) | 3133 |
| AspLEI | GCGC | 2 cut(s) | 2273, 2826 |
| AspS9I | GGNCC | 9 cut(s) | 126, 291, 827, 917, 1356, 1601, 1602, 1954, 2449 |
| AsuC2I | CCSGG | 1 cut(s) | 498 |
| AsuHPI | GGTGA | 9 cut(s) | 15, 377, 1078, 1113, 1196, 1514, 1646, 2249, 2423 |
| AsuII | TTCGAA | 1 cut(s) | 841 |
| AsuNHI | GCTAGC | 2 cut(s) | 1789, 2401 |
| AvaII | GGWCC | 5 cut(s) | 126, 827, 917, 1356, 2449 |
| AxyI | CCTNAGG | 1 cut(s) | 1950 |
| BaeGI | GKGCMC | 2 cut(s) | 505, 1605 |
| BalI | TGGCCA | 2 cut(s) | 5, 1582 |
| BanI | GGYRCC | 2 cut(s) | 500, 3133 |
| BanII | GRGCYC | 1 cut(s) | 1605 |
| BbsI | GAAGAC | 1 cut(s) | 1618 |
| Bbv12I | GWGCWC | 1 cut(s) | 264 |
| BbvCI | CCTCAGC | 1 cut(s) | 3049 |
| BbvI | GCAGC | 9 cut(s) | 440, 580, 583, 670, 742, 979, 1237, 1685, 3220 |
| BceAI | ACGGC | 2 cut(s) | 1018, 1414 |
| BciT130I | CCWGG | 3 cut(s) | 1235, 1782, 1958 |
| BcnI | CCSGG | 1 cut(s) | 498 |
| BcoDI | GTCTC | 4 cut(s) | 235, 320, 2677, 3031 |
| BfoI | RGCGCY | 2 cut(s) | 2274, 2827 |
| BfrI | CTTAAG | 1 cut(s) | 2731 |
| BfuAI | ACCTGC | 1 cut(s) | 2755 |
| BlpI | GCTNAGC | 1 cut(s) | 2640 |
| BmcAI | AGTACT | 2 cut(s) | 2475, 3024 |
| Bme1390I | CCNGG | 4 cut(s) | 498, 1235, 1782, 1958 |
| Bme18I | GGWCC | 5 cut(s) | 126, 827, 917, 1356, 2449 |
| BmgT120I | GGNCC | 9 cut(s) | 126, 291, 827, 917, 1356, 1601, 1602, 1954, 2449 |
| BmiI | GGNNCC | 7 cut(s) | 128, 502, 918, 1603, 2068, 2450, 3135 |
| BmrFI | CCNGG | 4 cut(s) | 498, 1235, 1782, 1958 |
| BmrI | ACTGGG | 1 cut(s) | 1520 |
| BmsI | GCATC | 7 cut(s) | 613, 631, 695, 724, 959, 1127, 1921 |
| BmtI | GCTAGC | 2 cut(s) | 1793, 2405 |
| BmuI | ACTGGG | 1 cut(s) | 1520 |
| BpiI | GAAGAC | 1 cut(s) | 1618 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3028, 3060 |
| BpmI | CTGGAG | 1 cut(s) | 765 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2590, 3049 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2640 |
| Bpu14I | TTCGAA | 1 cut(s) | 841 |
| BpuMI | CCSGG | 1 cut(s) | 498 |
| BsaAI | YACGTR | 1 cut(s) | 1913 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1548, 1746 |
| BsaI | GGTCTC | 3 cut(s) | 235, 320, 3031 |
| BsaJI | CCNNGG | 7 cut(s) | 294, 333, 423, 496, 1781, 2126, 2988 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1011, 1041 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 135, 356, 482, 1944, 2595, 2993 |
| Bse118I | RCCGGY | 2 cut(s) | 2177, 2405 |
| Bse1I | ACTGG | 5 cut(s) | 367, 1103, 1526, 2147, 2417 |
| Bse21I | CCTNAGG | 1 cut(s) | 1950 |
| Bse3DI | GCAATG | 2 cut(s) | 1113, 2178 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1548, 1746 |
| BseBI | CCWGG | 3 cut(s) | 1235, 1782, 1958 |
| BseDI | CCNNGG | 7 cut(s) | 294, 333, 423, 496, 1781, 2126, 2988 |
| BseJI | GATNNNNATC | 2 cut(s) | 1548, 1746 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 135, 356, 482, 1944, 2595, 2993 |
| BseMI | GCAATG | 2 cut(s) | 1113, 2178 |
| BseMII | CTCAG | 8 cut(s) | 533, 892, 1964, 2123, 2654, 2830, 2949, 3063 |
| BseNI | ACTGG | 5 cut(s) | 367, 1103, 1526, 2147, 2417 |
| BseRI | GAGGAG | 2 cut(s) | 22, 1260 |
| BseSI | GKGCMC | 2 cut(s) | 505, 1605 |
| BseXI | GCAGC | 9 cut(s) | 440, 580, 583, 670, 742, 979, 1237, 1685, 3220 |
| BsgI | GTGCAG | 2 cut(s) | 770, 3219 |
| Bsh1236I | CGCG | 2 cut(s) | 296, 2531 |
| BshNI | GGYRCC | 2 cut(s) | 500, 3133 |
| BsiHKAI | GWGCWC | 1 cut(s) | 264 |
| BsiSI | CCGG | 3 cut(s) | 498, 2178, 2406 |
| BslFI | GGGAC | 4 cut(s) | 89, 930, 2462, 2611 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 135, 356, 482, 1944, 2595, 2993 |
| BsmAI | GTCTC | 4 cut(s) | 235, 320, 2677, 3031 |
| BsmFI | GGGAC | 4 cut(s) | 89, 930, 2462, 2611 |
| BsmI | GAATGC | 1 cut(s) | 1501 |
| Bso31I | GGTCTC | 3 cut(s) | 235, 320, 3031 |
| Bsp119I | TTCGAA | 1 cut(s) | 841 |
| Bsp120I | GGGCCC | 1 cut(s) | 1601 |
| Bsp1286I | GDGCHC | 3 cut(s) | 264, 505, 1605 |
| Bsp1407I | TGTACA | 1 cut(s) | 2504 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2640 |
| Bsp19I | CCATGG | 1 cut(s) | 2126 |
| BspACI | CCGC | 7 cut(s) | 26, 294, 296, 1645, 1843, 2531, 2972 |
| BspCNI | CTCAG | 8 cut(s) | 532, 891, 1963, 2122, 2653, 2829, 2950, 3062 |
| BspFNI | CGCG | 2 cut(s) | 296, 2531 |
| BspHI | TCATGA | 1 cut(s) | 3142 |
| BspLI | GGNNCC | 7 cut(s) | 128, 502, 918, 1603, 2068, 2450, 3135 |
| BspMI | ACCTGC | 1 cut(s) | 2755 |
| BspOI | GCTAGC | 2 cut(s) | 1793, 2405 |
| BspPI | GGATC | 9 cut(s) | 1329, 1659, 1742, 2272, 2398, 2408, 2558, 2978, 3022 |
| BspQI | GCTCTTC | 3 cut(s) | 270, 1683, 1823 |
| BspT104I | TTCGAA | 1 cut(s) | 841 |
| BspT107I | GGYRCC | 2 cut(s) | 500, 3133 |
| BspTI | CTTAAG | 1 cut(s) | 2731 |
| BspTNI | GGTCTC | 3 cut(s) | 235, 320, 3031 |
| BsrDI | GCAATG | 2 cut(s) | 1113, 2178 |
| BsrFI | RCCGGY | 2 cut(s) | 2177, 2405 |
| BsrGI | TGTACA | 1 cut(s) | 2504 |
| BsrI | ACTGG | 5 cut(s) | 367, 1103, 1526, 2147, 2417 |
| BssAI | RCCGGY | 2 cut(s) | 2177, 2405 |
| BssECI | CCNNGG | 7 cut(s) | 294, 333, 423, 496, 1781, 2126, 2988 |
| BssT1I | CCWWGG | 1 cut(s) | 2126 |
| Bst2UI | CCWGG | 3 cut(s) | 1235, 1782, 1958 |
| Bst6I | CTCTTC | 9 cut(s) | 40, 122, 180, 270, 431, 1683, 1823, 2693, 2904 |
| BstAFI | CTTAAG | 1 cut(s) | 2731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1387 |
| BstAUI | TGTACA | 1 cut(s) | 2504 |
| BstBAI | YACGTR | 1 cut(s) | 1913 |
| BstBI | TTCGAA | 1 cut(s) | 841 |
| BstC8I | GCNNGC | 6 cut(s) | 753, 1791, 2179, 2403, 2935, 3238 |
| BstDSI | CCRYGG | 3 cut(s) | 294, 333, 2126 |
| BstFNI | CGCG | 2 cut(s) | 296, 2531 |
| BstH2I | RGCGCY | 2 cut(s) | 2274, 2827 |
| BstHHI | GCGC | 2 cut(s) | 2273, 2826 |
| BstMAI | GTCTC | 4 cut(s) | 235, 320, 2677, 3031 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 560, 590, 764, 894, 1387, 2277, 2636, 2650 |
| BstNI | CCWGG | 3 cut(s) | 1235, 1782, 1958 |
| BstNSI | RCATGY | 1 cut(s) | 1385 |
| BstSCI | CCNGG | 4 cut(s) | 496, 1233, 1780, 1956 |
| BstSLI | GKGCMC | 2 cut(s) | 505, 1605 |
| BstUI | CGCG | 2 cut(s) | 296, 2531 |
| BstV1I | GCAGC | 9 cut(s) | 440, 580, 583, 670, 742, 979, 1237, 1685, 3220 |
| BstV2I | GAAGAC | 1 cut(s) | 1618 |
| BstX2I | RGATCY | 3 cut(s) | 1321, 1651, 2563 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 157 |
| BstYI | RGATCY | 3 cut(s) | 1321, 1651, 2563 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1950 |
| BtgI | CCRYGG | 3 cut(s) | 294, 333, 2126 |
| BtsIMutI | CAGTG | 5 cut(s) | 527, 608, 886, 2049, 2154 |
| BveI | ACCTGC | 1 cut(s) | 2755 |
| Cac8I | GCNNGC | 6 cut(s) | 753, 1791, 2179, 2403, 2935, 3238 |
| CaiI | CAGNNNCTG | 4 cut(s) | 482, 1957, 2000, 3056 |
| CciI | TCATGA | 1 cut(s) | 3142 |
| CfoI | GCGC | 2 cut(s) | 2273, 2826 |
| Cfr10I | RCCGGY | 2 cut(s) | 2177, 2405 |
| Cfr13I | GGNCC | 9 cut(s) | 126, 291, 827, 917, 1356, 1601, 1602, 1954, 2449 |
| Cfr42I | CCGCGG | 1 cut(s) | 297 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 597, 632, 1707, 1742 |
| CviAII | CATG | 8 cut(s) | 7, 964, 1382, 1578, 2009, 2127, 2453, 3143 |
| DraIII | CACNNNGTG | 1 cut(s) | 2495 |
| EaeI | YGGCCR | 5 cut(s) | 3, 1580, 1690, 2175, 2179 |
| Eam1104I | CTCTTC | 9 cut(s) | 40, 122, 180, 270, 431, 1683, 1823, 2693, 2904 |
| EarI | CTCTTC | 9 cut(s) | 40, 122, 180, 270, 431, 1683, 1823, 2693, 2904 |
| Eco130I | CCWWGG | 1 cut(s) | 2126 |
| Eco147I | AGGCCT | 1 cut(s) | 537 |
| Eco24I | GRGCYC | 1 cut(s) | 1605 |
| Eco31I | GGTCTC | 3 cut(s) | 235, 320, 3031 |
| Eco32I | GATATC | 2 cut(s) | 673, 2999 |
| Eco47I | GGWCC | 5 cut(s) | 126, 827, 917, 1356, 2449 |
| Eco47III | AGCGCT | 1 cut(s) | 2272 |
| Eco57I | CTGAAG | 2 cut(s) | 2490, 2928 |
| Eco81I | CCTNAGG | 1 cut(s) | 1950 |
| EcoO109I | RGGNCCY | 2 cut(s) | 917, 1954 |
| EcoRI | GAATTC | 1 cut(s) | 1573 |
| EcoRII | CCWGG | 3 cut(s) | 1233, 1780, 1956 |
| EcoRV | GATATC | 2 cut(s) | 673, 2999 |
| EcoT14I | CCWWGG | 1 cut(s) | 2126 |
| EcoT22I | ATGCAT | 2 cut(s) | 1120, 1383 |
| EcoT38I | GRGCYC | 1 cut(s) | 1605 |
| ErhI | CCWWGG | 1 cut(s) | 2126 |
| FaeI | CATG | 8 cut(s) | 10, 967, 1385, 1581, 2012, 2130, 2456, 3146 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 428, 460, 2463, 2495, 2628, 2660 |
| FaqI | GGGAC | 4 cut(s) | 89, 930, 2462, 2611 |
| FatI | CATG | 8 cut(s) | 6, 963, 1381, 1577, 2008, 2126, 2452, 3142 |
| FblI | GTMKAC | 1 cut(s) | 1909 |
| FriOI | GRGCYC | 1 cut(s) | 1605 |
| FseI | GGCCGGCC | 1 cut(s) | 2181 |
| GlaI | GCGC | 2 cut(s) | 2272, 2825 |
| GsuI | CTGGAG | 1 cut(s) | 765 |
| HaeII | RGCGCY | 2 cut(s) | 2274, 2827 |
| HapII | CCGG | 3 cut(s) | 498, 2178, 2406 |
| HhaI | GCGC | 2 cut(s) | 2273, 2826 |
| Hin1II | CATG | 8 cut(s) | 10, 967, 1385, 1581, 2012, 2130, 2456, 3146 |
| Hin6I | GCGC | 2 cut(s) | 2271, 2824 |
| HinP1I | GCGC | 2 cut(s) | 2271, 2824 |
| HincII | GTYRAC | 1 cut(s) | 1156 |
| HindII | GTYRAC | 1 cut(s) | 1156 |
| HindIII | AAGCTT | 3 cut(s) | 11, 168, 1054 |
| HpaII | CCGG | 3 cut(s) | 498, 2178, 2406 |
| HphI | GGTGA | 9 cut(s) | 15, 377, 1078, 1113, 1196, 1514, 1646, 2249, 2423 |
| Hpy166II | GTNNAC | 7 cut(s) | 1156, 1219, 1761, 1910, 2035, 2505, 3082 |
| Hpy8I | GTNNAC | 7 cut(s) | 1156, 1219, 1761, 1910, 2035, 2505, 3082 |
| HpyCH4IV | ACGT | 2 cut(s) | 195, 1912 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 560, 590, 764, 894, 1387, 2277, 2636, 2650 |
| HpySE526I | ACGT | 2 cut(s) | 195, 1912 |
| Hsp92II | CATG | 8 cut(s) | 10, 967, 1385, 1581, 2012, 2130, 2456, 3146 |
| HspAI | GCGC | 2 cut(s) | 2271, 2824 |
| KpnI | GGTACC | 1 cut(s) | 3137 |
| KroI | GCCGGC | 1 cut(s) | 2177 |
| KroNI | GCCGGC | 1 cut(s) | 2179 |
| KspI | CCGCGG | 1 cut(s) | 297 |
| LguI | GCTCTTC | 3 cut(s) | 270, 1683, 1823 |
| LmnI | GCTCC | 5 cut(s) | 1247, 1258, 1306, 2329, 2764 |
| Lsp1109I | GCAGC | 9 cut(s) | 440, 580, 583, 670, 742, 979, 1237, 1685, 3220 |
| LweI | GCATC | 7 cut(s) | 613, 631, 695, 724, 959, 1127, 1921 |
| MaeII | ACGT | 2 cut(s) | 195, 1912 |
| MaeIII | GTNAC | 4 cut(s) | 514, 1852, 2218, 2848 |
| MflI | RGATCY | 3 cut(s) | 1321, 1651, 2563 |
| MhlI | GDGCHC | 3 cut(s) | 264, 505, 1605 |
| MlsI | TGGCCA | 2 cut(s) | 5, 1582 |
| MluNI | TGGCCA | 2 cut(s) | 5, 1582 |
| MlyI | GAGTC | 2 cut(s) | 2589, 2679 |
| MmeI | TCCRAC | 3 cut(s) | 99, 1231, 3186 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 1582 |
| Mph1103I | ATGCAT | 2 cut(s) | 1120, 1383 |
| MroNI | GCCGGC | 1 cut(s) | 2177 |
| MroXI | GAANNNNTTC | 5 cut(s) | 440, 859, 1488, 2464, 2475 |
| MscI | TGGCCA | 2 cut(s) | 5, 1582 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 1582 |
| MspA1I | CMGCKG | 3 cut(s) | 296, 2834, 3233 |
| MspCI | CTTAAG | 1 cut(s) | 2731 |
| MspI | CCGG | 3 cut(s) | 498, 2178, 2406 |
| MspR9I | CCNGG | 4 cut(s) | 498, 1235, 1782, 1958 |
| Mva1269I | GAATGC | 1 cut(s) | 1501 |
| MvaI | CCWGG | 3 cut(s) | 1235, 1782, 1958 |
| MvnI | CGCG | 2 cut(s) | 296, 2531 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 560, 590, 764, 894, 1387, 2277, 2636, 2650 |
| NaeI | GCCGGC | 1 cut(s) | 2179 |
| NciI | CCSGG | 1 cut(s) | 498 |
| NcoI | CCATGG | 1 cut(s) | 2126 |
| NgoMIV | GCCGGC | 1 cut(s) | 2177 |
| NheI | GCTAGC | 2 cut(s) | 1789, 2401 |
| NlaIII | CATG | 8 cut(s) | 10, 967, 1385, 1581, 2012, 2130, 2456, 3146 |
| NlaIV | GGNNCC | 7 cut(s) | 128, 502, 918, 1603, 2068, 2450, 3135 |
| NsiI | ATGCAT | 2 cut(s) | 1120, 1383 |
| NspI | RCATGY | 1 cut(s) | 1385 |
| NspV | TTCGAA | 1 cut(s) | 841 |
| PagI | TCATGA | 1 cut(s) | 3142 |
| PceI | AGGCCT | 1 cut(s) | 537 |
| PciSI | GCTCTTC | 3 cut(s) | 270, 1683, 1823 |
| PctI | GAATGC | 1 cut(s) | 1501 |
| PdiI | GCCGGC | 1 cut(s) | 2179 |
| PdmI | GAANNNNTTC | 5 cut(s) | 440, 859, 1488, 2464, 2475 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 482 |
| PleI | GAGTC | 2 cut(s) | 2588, 2679 |
| PpsI | GAGTC | 2 cut(s) | 2588, 2679 |
| Ppu21I | YACGTR | 1 cut(s) | 1913 |
| PpuMI | RGGWCCY | 1 cut(s) | 917 |
| PshBI | ATTAAT | 1 cut(s) | 3069 |
| Psp1406I | AACGTT | 1 cut(s) | 195 |
| Psp5II | RGGWCCY | 1 cut(s) | 917 |
| Psp6I | CCWGG | 3 cut(s) | 1233, 1780, 1956 |
| PspGI | CCWGG | 3 cut(s) | 1233, 1780, 1956 |
| PspN4I | GGNNCC | 7 cut(s) | 128, 502, 918, 1603, 2068, 2450, 3135 |
| PspOMI | GGGCCC | 1 cut(s) | 1601 |
| PspPI | GGNCC | 9 cut(s) | 126, 291, 827, 917, 1356, 1601, 1602, 1954, 2449 |
| PspPPI | RGGWCCY | 1 cut(s) | 917 |
| PstNI | CAGNNNCTG | 4 cut(s) | 482, 1957, 2000, 3056 |
| PsuI | RGATCY | 3 cut(s) | 1321, 1651, 2563 |
| PvuII | CAGCTG | 2 cut(s) | 2834, 3233 |
| RigI | GGCCGGCC | 1 cut(s) | 2181 |
| SacII | CCGCGG | 1 cut(s) | 297 |
| SapI | GCTCTTC | 3 cut(s) | 270, 1683, 1823 |
| Sau96I | GGNCC | 9 cut(s) | 126, 291, 827, 917, 1356, 1601, 1602, 1954, 2449 |
| ScaI | AGTACT | 2 cut(s) | 2475, 3024 |
| SchI | GAGTC | 2 cut(s) | 2589, 2679 |
| ScrFI | CCNGG | 4 cut(s) | 498, 1235, 1782, 1958 |
| SduI | GDGCHC | 3 cut(s) | 264, 505, 1605 |
| SfaNI | GCATC | 7 cut(s) | 613, 631, 695, 724, 959, 1127, 1921 |
| Sfr303I | CCGCGG | 1 cut(s) | 297 |
| SfuI | TTCGAA | 1 cut(s) | 841 |
| SgrBI | CCGCGG | 1 cut(s) | 297 |
| SinI | GGWCC | 5 cut(s) | 126, 827, 917, 1356, 2449 |
| SmlI | CTYRAG | 1 cut(s) | 2731 |
| SmoI | CTYRAG | 1 cut(s) | 2731 |
| SseBI | AGGCCT | 1 cut(s) | 537 |
| SsiI | CCGC | 7 cut(s) | 26, 294, 296, 1645, 1843, 2531, 2972 |
| SspI | AATATT | 1 cut(s) | 859 |
| StuI | AGGCCT | 1 cut(s) | 537 |
| StyD4I | CCNGG | 4 cut(s) | 496, 1233, 1780, 1956 |
| StyI | CCWWGG | 1 cut(s) | 2126 |
| TaiI | ACGT | 2 cut(s) | 198, 1915 |
| TaqI | TCGA | 7 cut(s) | 417, 841, 867, 1803, 2393, 2798, 3129 |
| TatI | WGTACW | 7 cut(s) | 1384, 1683, 1892, 2473, 2504, 3022, 3081 |
| TauI | GCSGC | 2 cut(s) | 296, 1647 |
| TscAI | CASTG | 5 cut(s) | 527, 615, 886, 2049, 2154 |
| TseI | GCWGC | 9 cut(s) | 428, 593, 596, 683, 755, 992, 1250, 1673, 3233 |
| TspGWI | ACGGA | 2 cut(s) | 339, 2342 |
| TspRI | CASTG | 5 cut(s) | 527, 615, 886, 2049, 2154 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 482 |
| Vha464I | CTTAAG | 1 cut(s) | 2731 |
| VpaK11BI | GGWCC | 5 cut(s) | 126, 827, 917, 1356, 2449 |
| VspI | ATTAAT | 1 cut(s) | 3069 |
| XapI | RAATTY | 6 cut(s) | 373, 1268, 1573, 1870, 2190, 2304 |
| XbaI | TCTAGA | 1 cut(s) | 284 |
| XceI | RCATGY | 1 cut(s) | 1385 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1131, 1284 |
| XmiI | GTMKAC | 1 cut(s) | 1909 |
| XmnI | GAANNNNTTC | 5 cut(s) | 440, 859, 1488, 2464, 2475 |
| ZrmI | AGTACT | 2 cut(s) | 2475, 3024 |
| Zsp2I | ATGCAT | 2 cut(s) | 1120, 1383 |