NHL repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56500 AT1G56500 AT1G56500 |
| fragaria_vesca | FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 FvH4_6g07620 |
| malus_domestica | MD12G1204700.v1.1 |
| prunus_persica | Prupe.6G311900_v2.0.a1 |
| pyrus_communis | pycom12g19260 |
| rosa_chinensis | RchiOBHm_Chr3g0457281 |
| rosa_laevigata | RLG00000025237 |
| rosa_multiflora | Rmu_co8517633.1_g000003 Rmu_sc0005442.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00422020 Rroxscaffold_6G00422050 |
| rosa_rugosa | Rorug03G0019600 |
| rosa_samantha | Rh3AG079700 Rh3BG081400 Rh3CG081800 Rh3DG083400 |
| rosa_wichuraiana | Rw3G006870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 664 |
| AccB1I | GGYRCC | 1 cut(s) | 494 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 476 |
| AciI | CCGC | 4 cut(s) | 130, 591, 1648, 1846 |
| AclI | AACGTT | 1 cut(s) | 1197 |
| AcoI | YGGCCR | 4 cut(s) | 3, 285, 1583, 2182 |
| AcsI | RAATTY | 7 cut(s) | 472, 1271, 1463, 1873, 2307, 2523, 2688 |
| AcuI | CTGAAG | 2 cut(s) | 2493, 2931 |
| AcyI | GRCGYC | 1 cut(s) | 2499 |
| AdeI | CACNNNGTG | 1 cut(s) | 2516 |
| AfaI | GTAC | 7 cut(s) | 255, 994, 1897, 2053, 2110, 2590, 2907 |
| AfeI | AGCGCT | 1 cut(s) | 556 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 350, 476, 1005, 1614, 1852, 1947, 2061, 2996, 3239 |
| AjnI | CCWGG | 5 cut(s) | 490, 906, 1236, 1783, 2991 |
| AleI | CACNNNNGTG | 1 cut(s) | 1442 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1326, 1358 |
| Alw21I | GWGCWC | 1 cut(s) | 2512 |
| Alw26I | GTCTC | 2 cut(s) | 797, 3034 |
| Alw44I | GTGCAC | 1 cut(s) | 2508 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2003, 2909 |
| Aor51HI | AGCGCT | 1 cut(s) | 556 |
| AoxI | GGCC | 7 cut(s) | 3, 122, 285, 1583, 1604, 1949, 2182 |
| ApaI | GGGCCC | 1 cut(s) | 1608 |
| ApaLI | GTGCAC | 1 cut(s) | 2508 |
| ApeKI | GCWGC | 8 cut(s) | 386, 422, 587, 677, 749, 758, 815, 1676 |
| ApoI | RAATTY | 7 cut(s) | 472, 1271, 1463, 1873, 2307, 2523, 2688 |
| AseI | ATTAAT | 1 cut(s) | 3072 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 434, 853, 1491, 2478 |
| AspLEI | GCGC | 1 cut(s) | 557 |
| AspS9I | GGNCC | 6 cut(s) | 821, 911, 1234, 1359, 1604, 1605 |
| AsuC2I | CCSGG | 1 cut(s) | 1529 |
| AsuHPI | GGTGA | 9 cut(s) | 371, 1081, 1116, 1199, 1517, 1649, 2252, 2426, 2462 |
| AsuII | TTCGAA | 2 cut(s) | 835, 3132 |
| AsuNHI | GCTAGC | 2 cut(s) | 68, 2404 |
| AvaII | GGWCC | 4 cut(s) | 821, 911, 1234, 1359 |
| AxyI | CCTNAGG | 2 cut(s) | 417, 1953 |
| BaeGI | GKGCMC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| BalI | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| BamHI | GGATCC | 1 cut(s) | 2986 |
| BanI | GGYRCC | 1 cut(s) | 494 |
| BanII | GRGCYC | 1 cut(s) | 1608 |
| BbsI | GAAGAC | 2 cut(s) | 339, 2830 |
| Bbv12I | GWGCWC | 1 cut(s) | 2512 |
| BbvI | GCAGC | 8 cut(s) | 373, 434, 574, 664, 736, 745, 802, 1688 |
| BceAI | ACGGC | 1 cut(s) | 1417 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1639, 1673 |
| BciT130I | CCWGG | 5 cut(s) | 492, 908, 1238, 1785, 2993 |
| BciVI | GTATCC | 1 cut(s) | 1642 |
| BcnI | CCSGG | 1 cut(s) | 1529 |
| BcoDI | GTCTC | 2 cut(s) | 797, 3034 |
| BfmI | CTRYAG | 2 cut(s) | 2592, 2973 |
| BfoI | RGCGCY | 1 cut(s) | 558 |
| BfuAI | ACCTGC | 1 cut(s) | 664 |
| BfuI | GTATCC | 1 cut(s) | 1642 |
| BglII | AGATCT | 1 cut(s) | 687 |
| BlpI | GCTNAGC | 1 cut(s) | 2643 |
| BmcAI | AGTACT | 4 cut(s) | 255, 1897, 2110, 2590 |
| Bme1390I | CCNGG | 6 cut(s) | 492, 908, 1238, 1529, 1785, 2993 |
| Bme18I | GGWCC | 4 cut(s) | 821, 911, 1234, 1359 |
| BmgT120I | GGNCC | 6 cut(s) | 821, 911, 1234, 1359, 1604, 1605 |
| BmiI | GGNNCC | 6 cut(s) | 496, 912, 1606, 1619, 2071, 2988 |
| BmrFI | CCNGG | 6 cut(s) | 492, 908, 1238, 1529, 1785, 2993 |
| BmsI | GCATC | 9 cut(s) | 607, 625, 689, 718, 761, 1130, 1527, 1924, 2125 |
| BmtI | GCTAGC | 2 cut(s) | 72, 2408 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2830 |
| BpiI | GAAGAC | 2 cut(s) | 339, 2830 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2345, 2377 |
| BpmI | CTGGAG | 2 cut(s) | 1430, 1920 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2643 |
| Bpu14I | TTCGAA | 2 cut(s) | 835, 3132 |
| BpuEI | CTTGAG | 1 cut(s) | 2312 |
| BpuMI | CCSGG | 1 cut(s) | 1529 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1551, 3000 |
| BsaHI | GRCGYC | 1 cut(s) | 2499 |
| BsaI | GGTCTC | 1 cut(s) | 3034 |
| BsaJI | CCNNGG | 7 cut(s) | 490, 907, 2089, 2129, 2175, 2982, 2991 |
| BsaWI | WCCGGW | 1 cut(s) | 1634 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 350, 476, 1005, 1614, 1852, 1947, 2061, 2996, 3239 |
| Bse118I | RCCGGY | 1 cut(s) | 287 |
| Bse1I | ACTGG | 7 cut(s) | 361, 994, 1106, 1903, 2150, 2420, 3233 |
| Bse21I | CCTNAGG | 2 cut(s) | 417, 1953 |
| Bse3DI | GCAATG | 2 cut(s) | 1116, 1504 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1551, 3000 |
| BseBI | CCWGG | 5 cut(s) | 492, 908, 1238, 1785, 2993 |
| BseDI | CCNNGG | 7 cut(s) | 490, 907, 2089, 2129, 2175, 2982, 2991 |
| BseGI | GGATG | 9 cut(s) | 253, 700, 824, 903, 2140, 2146, 2488, 2870, 3001 |
| BseJI | GATNNNNATC | 2 cut(s) | 1551, 3000 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 350, 476, 1005, 1614, 1852, 1947, 2061, 2996, 3239 |
| BseMI | GCAATG | 2 cut(s) | 1116, 1504 |
| BseNI | ACTGG | 7 cut(s) | 361, 994, 1106, 1903, 2150, 2420, 3233 |
| BseRI | GAGGAG | 2 cut(s) | 1976, 2108 |
| BseSI | GKGCMC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| BseXI | GCAGC | 8 cut(s) | 373, 434, 574, 664, 736, 745, 802, 1688 |
| BseYI | CCCAGC | 2 cut(s) | 2060, 3061 |
| BsgI | GTGCAG | 1 cut(s) | 764 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2831 |
| BshFI | GGCC | 7 cut(s) | 5, 124, 287, 1585, 1606, 1951, 2184 |
| BshNI | GGYRCC | 1 cut(s) | 494 |
| BsiEI | CGRYCG | 1 cut(s) | 2831 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2512 |
| BsiSI | CCGG | 3 cut(s) | 288, 1529, 1635 |
| BslFI | GGGAC | 2 cut(s) | 924, 1971 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 350, 476, 1005, 1614, 1852, 1947, 2061, 2996, 3239 |
| BsmAI | GTCTC | 2 cut(s) | 797, 3034 |
| BsmFI | GGGAC | 2 cut(s) | 924, 1971 |
| BsnI | GGCC | 7 cut(s) | 5, 124, 287, 1585, 1606, 1951, 2184 |
| Bso31I | GGTCTC | 1 cut(s) | 3034 |
| Bsp119I | TTCGAA | 2 cut(s) | 835, 3132 |
| Bsp120I | GGGCCC | 1 cut(s) | 1604 |
| Bsp1286I | GDGCHC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2643 |
| Bsp19I | CCATGG | 3 cut(s) | 2129, 2175, 2982 |
| BspACI | CCGC | 4 cut(s) | 130, 591, 1648, 1846 |
| BspANI | GGCC | 7 cut(s) | 5, 124, 287, 1585, 1606, 1951, 2184 |
| BspLI | GGNNCC | 6 cut(s) | 496, 912, 1606, 1619, 2071, 2988 |
| BspMAI | CTGCAG | 1 cut(s) | 2977 |
| BspMI | ACCTGC | 1 cut(s) | 664 |
| BspOI | GCTAGC | 2 cut(s) | 72, 2408 |
| BspQI | GCTCTTC | 4 cut(s) | 264, 1686, 1826, 2281 |
| BspT104I | TTCGAA | 2 cut(s) | 835, 3132 |
| BspT107I | GGYRCC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 3034 |
| BsrDI | GCAATG | 2 cut(s) | 1116, 1504 |
| BsrFI | RCCGGY | 1 cut(s) | 287 |
| BsrI | ACTGG | 7 cut(s) | 361, 994, 1106, 1903, 2150, 2420, 3233 |
| BssAI | RCCGGY | 1 cut(s) | 287 |
| BssECI | CCNNGG | 7 cut(s) | 490, 907, 2089, 2129, 2175, 2982, 2991 |
| BssNI | GRCGYC | 1 cut(s) | 2499 |
| BssT1I | CCWWGG | 3 cut(s) | 2129, 2175, 2982 |
| Bst2UI | CCWGG | 5 cut(s) | 492, 908, 1238, 1785, 2993 |
| BstACI | GRCGYC | 1 cut(s) | 2499 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1390 |
| BstBI | TTCGAA | 2 cut(s) | 835, 3132 |
| BstDSI | CCRYGG | 3 cut(s) | 2129, 2175, 2982 |
| BstEII | GGTNACC | 2 cut(s) | 1855, 2450 |
| BstF5I | GGATG | 9 cut(s) | 253, 700, 824, 903, 2140, 2146, 2488, 2870, 3001 |
| BstH2I | RGCGCY | 1 cut(s) | 558 |
| BstHHI | GCGC | 1 cut(s) | 557 |
| BstMAI | GTCTC | 2 cut(s) | 797, 3034 |
| BstMCI | CGRYCG | 1 cut(s) | 2831 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 554, 584, 755, 758, 888, 1390, 2280, 2653 |
| BstNI | CCWGG | 5 cut(s) | 492, 908, 1238, 1785, 2993 |
| BstNSI | RCATGY | 1 cut(s) | 1388 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2830 |
| BstPI | GGTNACC | 2 cut(s) | 1855, 2450 |
| BstSCI | CCNGG | 6 cut(s) | 490, 906, 1236, 1527, 1783, 2991 |
| BstSFI | CTRYAG | 2 cut(s) | 2592, 2973 |
| BstSLI | GKGCMC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| BstV1I | GCAGC | 8 cut(s) | 373, 434, 574, 664, 736, 745, 802, 1688 |
| BstV2I | GAAGAC | 2 cut(s) | 339, 2830 |
| BstX2I | RGATCY | 6 cut(s) | 197, 687, 1324, 1654, 2566, 2986 |
| BstYI | RGATCY | 6 cut(s) | 197, 687, 1324, 1654, 2566, 2986 |
| Bsu36I | CCTNAGG | 2 cut(s) | 417, 1953 |
| BsuI | GTATCC | 1 cut(s) | 1642 |
| BsuRI | GGCC | 7 cut(s) | 5, 124, 287, 1585, 1606, 1951, 2184 |
| BtgI | CCRYGG | 3 cut(s) | 2129, 2175, 2982 |
| BtsCI | GGATG | 9 cut(s) | 253, 700, 824, 903, 2140, 2146, 2488, 2870, 3001 |
| BtsI | GCAGTG | 1 cut(s) | 1509 |
| BtsIMutI | CAGTG | 7 cut(s) | 333, 521, 602, 880, 1437, 1509, 2052 |
| BveI | ACCTGC | 1 cut(s) | 664 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2003, 2909 |
| CfoI | GCGC | 1 cut(s) | 557 |
| Cfr10I | RCCGGY | 1 cut(s) | 287 |
| Cfr13I | GGNCC | 6 cut(s) | 821, 911, 1234, 1359, 1604, 1605 |
| CseI | GACGC | 2 cut(s) | 537, 2488 |
| Csp6I | GTAC | 7 cut(s) | 254, 993, 1896, 2052, 2109, 2589, 2906 |
| CviQI | GTAC | 7 cut(s) | 254, 993, 1896, 2052, 2109, 2589, 2906 |
| DraIII | CACNNNGTG | 1 cut(s) | 2516 |
| EaeI | YGGCCR | 4 cut(s) | 3, 285, 1583, 2182 |
| Eco130I | CCWWGG | 3 cut(s) | 2129, 2175, 2982 |
| Eco24I | GRGCYC | 1 cut(s) | 1608 |
| Eco31I | GGTCTC | 1 cut(s) | 3034 |
| Eco32I | GATATC | 3 cut(s) | 667, 2726, 3002 |
| Eco47I | GGWCC | 4 cut(s) | 821, 911, 1234, 1359 |
| Eco47III | AGCGCT | 1 cut(s) | 556 |
| Eco57I | CTGAAG | 2 cut(s) | 2493, 2931 |
| Eco81I | CCTNAGG | 2 cut(s) | 417, 1953 |
| Eco91I | GGTNACC | 2 cut(s) | 1855, 2450 |
| EcoO109I | RGGNCCY | 1 cut(s) | 911 |
| EcoO65I | GGTNACC | 2 cut(s) | 1855, 2450 |
| EcoRII | CCWGG | 5 cut(s) | 490, 906, 1236, 1783, 2991 |
| EcoRV | GATATC | 3 cut(s) | 667, 2726, 3002 |
| EcoT14I | CCWWGG | 3 cut(s) | 2129, 2175, 2982 |
| EcoT22I | ATGCAT | 3 cut(s) | 776, 1123, 1386 |
| EcoT38I | GRGCYC | 1 cut(s) | 1608 |
| ErhI | CCWWGG | 3 cut(s) | 2129, 2175, 2982 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 422, 454, 2466, 2498, 2631, 2663, 2739, 2771 |
| FaqI | GGGAC | 2 cut(s) | 924, 1971 |
| FauNDI | CATATG | 1 cut(s) | 3190 |
| FokI | GGATG | 9 cut(s) | 260, 707, 811, 890, 2133, 2147, 2475, 2857, 3008 |
| FriOI | GRGCYC | 1 cut(s) | 1608 |
| GlaI | GCGC | 1 cut(s) | 556 |
| GsaI | CCCAGC | 2 cut(s) | 2064, 3065 |
| GsuI | CTGGAG | 2 cut(s) | 1430, 1920 |
| HaeII | RGCGCY | 1 cut(s) | 558 |
| HaeIII | GGCC | 7 cut(s) | 5, 124, 287, 1585, 1606, 1951, 2184 |
| HapII | CCGG | 3 cut(s) | 288, 1529, 1635 |
| HgaI | GACGC | 2 cut(s) | 537, 2488 |
| HhaI | GCGC | 1 cut(s) | 557 |
| Hin1I | GRCGYC | 1 cut(s) | 2499 |
| Hin6I | GCGC | 1 cut(s) | 555 |
| HinP1I | GCGC | 1 cut(s) | 555 |
| HindIII | AAGCTT | 4 cut(s) | 162, 1057, 1790, 3207 |
| HinfI | GANTC | 8 cut(s) | 408, 486, 805, 1190, 1206, 1449, 2664, 3161 |
| HpaII | CCGG | 3 cut(s) | 288, 1529, 1635 |
| HphI | GGTGA | 9 cut(s) | 371, 1081, 1116, 1199, 1517, 1649, 2252, 2426, 2462 |
| Hpy166II | GTNNAC | 3 cut(s) | 1222, 1437, 2510 |
| Hpy8I | GTNNAC | 3 cut(s) | 1222, 1437, 2510 |
| Hpy99I | CGWCG | 1 cut(s) | 1664 |
| HpyCH4IV | ACGT | 2 cut(s) | 1197, 2762 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 554, 584, 755, 758, 888, 1390, 2280, 2653 |
| HpySE526I | ACGT | 2 cut(s) | 1197, 2762 |
| Hsp92I | GRCGYC | 1 cut(s) | 2499 |
| HspAI | GCGC | 1 cut(s) | 555 |
| LguI | GCTCTTC | 4 cut(s) | 264, 1686, 1826, 2281 |
| LmnI | GCTCC | 7 cut(s) | 664, 1261, 1309, 1623, 2121, 2332, 2366 |
| Lsp1109I | GCAGC | 8 cut(s) | 373, 434, 574, 664, 736, 745, 802, 1688 |
| LweI | GCATC | 9 cut(s) | 607, 625, 689, 718, 761, 1130, 1527, 1924, 2125 |
| MaeII | ACGT | 2 cut(s) | 1197, 2762 |
| MaeIII | GTNAC | 6 cut(s) | 1506, 1762, 1855, 2221, 2450, 3136 |
| MfeI | CAATTG | 1 cut(s) | 1797 |
| MflI | RGATCY | 6 cut(s) | 197, 687, 1324, 1654, 2566, 2986 |
| MhlI | GDGCHC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| MlsI | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| MluNI | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| MlyI | GAGTC | 2 cut(s) | 799, 1458 |
| MmeI | TCCRAC | 4 cut(s) | 1234, 1689, 1870, 3189 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| Mph1103I | ATGCAT | 3 cut(s) | 776, 1123, 1386 |
| MroXI | GAANNNNTTC | 4 cut(s) | 434, 853, 1491, 2478 |
| MscI | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1442 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 1585, 2184 |
| MspA1I | CMGCKG | 1 cut(s) | 2837 |
| MspI | CCGG | 3 cut(s) | 288, 1529, 1635 |
| MspR9I | CCNGG | 6 cut(s) | 492, 908, 1238, 1529, 1785, 2993 |
| MunI | CAATTG | 1 cut(s) | 1797 |
| MvaI | CCWGG | 5 cut(s) | 492, 908, 1238, 1785, 2993 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 554, 584, 755, 758, 888, 1390, 2280, 2653 |
| NciI | CCSGG | 1 cut(s) | 1529 |
| NcoI | CCATGG | 3 cut(s) | 2129, 2175, 2982 |
| NdeI | CATATG | 1 cut(s) | 3190 |
| NheI | GCTAGC | 2 cut(s) | 68, 2404 |
| NlaIV | GGNNCC | 6 cut(s) | 496, 912, 1606, 1619, 2071, 2988 |
| NmuCI | GTSAC | 1 cut(s) | 2450 |
| NsiI | ATGCAT | 3 cut(s) | 776, 1123, 1386 |
| NspI | RCATGY | 1 cut(s) | 1388 |
| NspV | TTCGAA | 2 cut(s) | 835, 3132 |
| OliI | CACNNNNGTG | 1 cut(s) | 1442 |
| PciSI | GCTCTTC | 4 cut(s) | 264, 1686, 1826, 2281 |
| PdmI | GAANNNNTTC | 4 cut(s) | 434, 853, 1491, 2478 |
| PfeI | GAWTC | 6 cut(s) | 408, 486, 1190, 1206, 2664, 3161 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 476 |
| PfoI | TCCNGGA | 1 cut(s) | 1783 |
| Ple19I | CGATCG | 1 cut(s) | 2831 |
| PleI | GAGTC | 2 cut(s) | 799, 1457 |
| PpsI | GAGTC | 2 cut(s) | 799, 1457 |
| PpuMI | RGGWCCY | 1 cut(s) | 911 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2830 |
| PshBI | ATTAAT | 1 cut(s) | 3072 |
| Psp1406I | AACGTT | 1 cut(s) | 1197 |
| Psp5II | RGGWCCY | 1 cut(s) | 911 |
| Psp6I | CCWGG | 5 cut(s) | 490, 906, 1236, 1783, 2991 |
| PspEI | GGTNACC | 2 cut(s) | 1855, 2450 |
| PspFI | CCCAGC | 2 cut(s) | 2060, 3061 |
| PspGI | CCWGG | 5 cut(s) | 490, 906, 1236, 1783, 2991 |
| PspN4I | GGNNCC | 6 cut(s) | 496, 912, 1606, 1619, 2071, 2988 |
| PspOMI | GGGCCC | 1 cut(s) | 1604 |
| PspPI | GGNCC | 6 cut(s) | 821, 911, 1234, 1359, 1604, 1605 |
| PspPPI | RGGWCCY | 1 cut(s) | 911 |
| PstI | CTGCAG | 1 cut(s) | 2977 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2003, 2909 |
| PsuI | RGATCY | 6 cut(s) | 197, 687, 1324, 1654, 2566, 2986 |
| PvuI | CGATCG | 1 cut(s) | 2831 |
| PvuII | CAGCTG | 1 cut(s) | 2837 |
| RsaI | GTAC | 7 cut(s) | 255, 994, 1897, 2053, 2110, 2590, 2907 |
| RsaNI | GTAC | 7 cut(s) | 254, 993, 1896, 2052, 2109, 2589, 2906 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1442 |
| SapI | GCTCTTC | 4 cut(s) | 264, 1686, 1826, 2281 |
| Sau96I | GGNCC | 6 cut(s) | 821, 911, 1234, 1359, 1604, 1605 |
| ScaI | AGTACT | 4 cut(s) | 255, 1897, 2110, 2590 |
| SchI | GAGTC | 2 cut(s) | 799, 1458 |
| ScrFI | CCNGG | 6 cut(s) | 492, 908, 1238, 1529, 1785, 2993 |
| SduI | GDGCHC | 5 cut(s) | 499, 702, 1608, 2374, 2512 |
| SfaNI | GCATC | 9 cut(s) | 607, 625, 689, 718, 761, 1130, 1527, 1924, 2125 |
| SfcI | CTRYAG | 2 cut(s) | 2592, 2973 |
| SfuI | TTCGAA | 2 cut(s) | 835, 3132 |
| SinI | GGWCC | 4 cut(s) | 821, 911, 1234, 1359 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1442 |
| SmlI | CTYRAG | 1 cut(s) | 2327 |
| SmoI | CTYRAG | 1 cut(s) | 2327 |
| SsiI | CCGC | 4 cut(s) | 130, 591, 1648, 1846 |
| StyD4I | CCNGG | 6 cut(s) | 490, 906, 1236, 1527, 1783, 2991 |
| StyI | CCWWGG | 3 cut(s) | 2129, 2175, 2982 |
| TaiI | ACGT | 2 cut(s) | 1200, 2765 |
| TaqI | TCGA | 8 cut(s) | 135, 294, 411, 835, 1659, 2396, 3132, 3212 |
| TatI | WGTACW | 4 cut(s) | 253, 1895, 2108, 2588 |
| TauI | GCSGC | 2 cut(s) | 593, 1650 |
| TfiI | GAWTC | 6 cut(s) | 408, 486, 1190, 1206, 2664, 3161 |
| TscAI | CASTG | 7 cut(s) | 333, 521, 609, 880, 1444, 1509, 2052 |
| TseFI | GTSAC | 1 cut(s) | 2450 |
| TseI | GCWGC | 8 cut(s) | 386, 422, 587, 677, 749, 758, 815, 1676 |
| Tsp45I | GTSAC | 1 cut(s) | 2450 |
| TspGWI | ACGGA | 3 cut(s) | 1761, 2280, 2640 |
| TspRI | CASTG | 7 cut(s) | 333, 521, 609, 880, 1444, 1509, 2052 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 476 |
| VneI | GTGCAC | 1 cut(s) | 2508 |
| VpaK11BI | GGWCC | 4 cut(s) | 821, 911, 1234, 1359 |
| VspI | ATTAAT | 1 cut(s) | 3072 |
| XapI | RAATTY | 7 cut(s) | 472, 1271, 1463, 1873, 2307, 2523, 2688 |
| XbaI | TCTAGA | 4 cut(s) | 278, 451, 2635, 2728 |
| XceI | RCATGY | 1 cut(s) | 1388 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2989 |
| XmnI | GAANNNNTTC | 4 cut(s) | 434, 853, 1491, 2478 |
| ZrmI | AGTACT | 4 cut(s) | 255, 1897, 2110, 2590 |
| Zsp2I | ATGCAT | 3 cut(s) | 776, 1123, 1386 |