Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| JmjN | PF02375 | 146 - 179 | 4.6e-18 | jmjN domain |
| JmjC | PF02373 | 389 - 505 | 4.4e-46 | JmjC domain, hydroxylase |
| zf-C5HC2 | PF02928 | 612 - 664 | 1.7e-16 | C5HC2 zinc finger |
| FYRN | PF05964 | 992 - 1036 | 5.5e-11 | F/Y-rich N-terminus |
| FYRC | PF05965 | 1041 - 1125 | 2.1e-20 | F/Y rich C-terminus |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 267 |
| AarI | CACCTGC | 1 cut(s) | 2960 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 558 |
| Acc36I | ACCTGC | 3 cut(s) | 380, 2248, 2960 |
| Acc65I | GGTACC | 1 cut(s) | 1405 |
| AccB1I | GGYRCC | 4 cut(s) | 58, 1159, 1405, 3234 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 407, 3244 |
| AccI | GTMKAC | 2 cut(s) | 621, 2028 |
| AccII | CGCG | 3 cut(s) | 351, 609, 3360 |
| AciI | CCGC | 5 cut(s) | 235, 351, 946, 2941, 3489 |
| AclI | AACGTT | 1 cut(s) | 1512 |
| AclWI | GGATC | 8 cut(s) | 745, 1123, 1721, 2165, 2643, 2954, 3062, 3153 |
| AcsI | RAATTY | 6 cut(s) | 47, 310, 753, 1295, 1766, 2972 |
| AcuI | CTGAAG | 7 cut(s) | 231, 474, 614, 1041, 1679, 2319, 3453 |
| AcvI | CACGTG | 1 cut(s) | 1739 |
| AfeI | AGCGCT | 2 cut(s) | 905, 1948 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 407, 546, 728, 1200, 1570, 2777, 3244, 3375 |
| AflII | CTTAAG | 2 cut(s) | 1681, 3586 |
| AflIII | ACRYGT | 1 cut(s) | 1738 |
| AhlI | ACTAGT | 1 cut(s) | 3509 |
| Alw21I | GWGCWC | 4 cut(s) | 1255, 1650, 2144, 2988 |
| Alw26I | GTCTC | 5 cut(s) | 231, 544, 581, 2277, 3097 |
| AlwI | GGATC | 8 cut(s) | 745, 1123, 1721, 2165, 2643, 2954, 3062, 3153 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 147, 1871 |
| Ama87I | CYCGRG | 2 cut(s) | 1458, 3229 |
| Aor51HI | AGCGCT | 2 cut(s) | 905, 1948 |
| AoxI | GGCC | 8 cut(s) | 239, 416, 2058, 3015, 3117, 3486, 3535, 3616 |
| ApeKI | GCWGC | 5 cut(s) | 1616, 1868, 2495, 2525, 3271 |
| ApoI | RAATTY | 6 cut(s) | 47, 310, 753, 1295, 1766, 2972 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 3643 |
| AseI | ATTAAT | 1 cut(s) | 3498 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2232, 3645 |
| Asp718I | GGTACC | 1 cut(s) | 1405 |
| AspLEI | GCGC | 3 cut(s) | 906, 1616, 1949 |
| AspS9I | GGNCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| AsuC2I | CCSGG | 2 cut(s) | 66, 3044 |
| AsuHPI | GGTGA | 9 cut(s) | 115, 947, 1208, 2649, 2941, 3170, 3214, 3309, 3455 |
| AsuII | TTCGAA | 1 cut(s) | 593 |
| AvaI | CYCGRG | 2 cut(s) | 1458, 3229 |
| AvaII | GGWCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| BaeGI | GKGCMC | 1 cut(s) | 1639 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1397, 1430 |
| BanI | GGYRCC | 4 cut(s) | 58, 1159, 1405, 3234 |
| BanII | GRGCYC | 3 cut(s) | 1650, 2144, 2477 |
| BauI | CACGAG | 1 cut(s) | 1819 |
| BbrPI | CACGTG | 1 cut(s) | 1739 |
| BbsI | GAAGAC | 3 cut(s) | 42, 2286, 3256 |
| Bbv12I | GWGCWC | 4 cut(s) | 1255, 1650, 2144, 2988 |
| BbvCI | CCTCAGC | 1 cut(s) | 276 |
| BbvI | GCAGC | 5 cut(s) | 1603, 1880, 2482, 2537, 3283 |
| BceAI | ACGGC | 1 cut(s) | 248 |
| BciVI | GTATCC | 1 cut(s) | 1283 |
| BclI | TGATCA | 1 cut(s) | 304 |
| BcnI | CCSGG | 2 cut(s) | 66, 3044 |
| BcoDI | GTCTC | 5 cut(s) | 231, 544, 581, 2277, 3097 |
| BcuI | ACTAGT | 1 cut(s) | 3509 |
| BfaI | CTAG | 8 cut(s) | 1104, 2040, 2045, 2562, 2969, 3510, 3557, 3620 |
| BfmI | CTRYAG | 4 cut(s) | 1551, 2255, 2406, 2496 |
| BfoI | RGCGCY | 3 cut(s) | 907, 1617, 1950 |
| BfrI | CTTAAG | 2 cut(s) | 1681, 3586 |
| BfuAI | ACCTGC | 3 cut(s) | 380, 2248, 2960 |
| BfuI | GTATCC | 1 cut(s) | 1283 |
| BglII | AGATCT | 1 cut(s) | 2047 |
| BisI | GCNGC | 6 cut(s) | 1617, 1869, 2496, 2526, 3272, 3489 |
| BlsI | GCNGC | 6 cut(s) | 1618, 1870, 2497, 2527, 3273, 3490 |
| BmcAI | AGTACT | 4 cut(s) | 163, 2125, 3102, 3374 |
| Bme18I | GGWCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| BmeT110I | CYCGRG | 2 cut(s) | 1458, 3229 |
| BmgT120I | GGNCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| BmiI | GGNNCC | 8 cut(s) | 60, 912, 1161, 1407, 2919, 2920, 3041, 3236 |
| BmrI | ACTGGG | 2 cut(s) | 2226, 3385 |
| BmuI | ACTGGG | 2 cut(s) | 2226, 3385 |
| BpiI | GAAGAC | 3 cut(s) | 42, 2286, 3256 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2970, 3002 |
| BpmI | CTGGAG | 3 cut(s) | 420, 747, 1455 |
| Bpu10I | CCTNAGC | 1 cut(s) | 276 |
| Bpu14I | TTCGAA | 1 cut(s) | 593 |
| BpuEI | CTTGAG | 6 cut(s) | 551, 907, 1715, 2083, 2259, 3387 |
| BpuMI | CCSGG | 2 cut(s) | 66, 3044 |
| Bsa29I | ATCGAT | 1 cut(s) | 1977 |
| BsaAI | YACGTR | 1 cut(s) | 1739 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1857, 3354 |
| BsaI | GGTCTC | 2 cut(s) | 231, 544 |
| BsaJI | CCNNGG | 7 cut(s) | 242, 1163, 1276, 1785, 2177, 2730, 3278 |
| BsaWI | WCCGGW | 1 cut(s) | 1037 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1428, 1458 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 407, 546, 728, 1200, 1570, 2777, 3244, 3375 |
| Bse118I | RCCGGY | 1 cut(s) | 3491 |
| Bse3DI | GCAATG | 2 cut(s) | 2868, 3351 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1857, 3354 |
| BseCI | ATCGAT | 1 cut(s) | 1977 |
| BseDI | CCNNGG | 7 cut(s) | 242, 1163, 1276, 1785, 2177, 2730, 3278 |
| BseJI | GATNNNNATC | 2 cut(s) | 1857, 3354 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 407, 546, 728, 1200, 1570, 2777, 3244, 3375 |
| BseMI | GCAATG | 2 cut(s) | 2868, 3351 |
| BseMII | CTCAG | 3 cut(s) | 267, 2781, 3108 |
| BseRI | GAGGAG | 2 cut(s) | 473, 1774 |
| BseSI | GKGCMC | 1 cut(s) | 1639 |
| BseXI | GCAGC | 5 cut(s) | 1603, 1880, 2482, 2537, 3283 |
| BseYI | CCCAGC | 3 cut(s) | 906, 2687, 3192 |
| BsgI | GTGCAG | 3 cut(s) | 1518, 2043, 3428 |
| Bsh1236I | CGCG | 3 cut(s) | 351, 609, 3360 |
| BshFI | GGCC | 8 cut(s) | 241, 418, 2060, 3017, 3119, 3488, 3537, 3618 |
| BshNI | GGYRCC | 4 cut(s) | 58, 1159, 1405, 3234 |
| BshVI | ATCGAT | 1 cut(s) | 1977 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1255, 1650, 2144, 2988 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1458, 3229 |
| BsiSI | CCGG | 5 cut(s) | 65, 1038, 3043, 3120, 3492 |
| BslFI | GGGAC | 4 cut(s) | 19, 1587, 2904, 3372 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 407, 546, 728, 1200, 1570, 2777, 3244, 3375 |
| BsmAI | GTCTC | 5 cut(s) | 231, 544, 581, 2277, 3097 |
| BsmBI | CGTCTC | 1 cut(s) | 3097 |
| BsmFI | GGGAC | 4 cut(s) | 19, 1587, 2904, 3372 |
| BsmI | GAATGC | 2 cut(s) | 1838, 3481 |
| BsnI | GGCC | 8 cut(s) | 241, 418, 2060, 3017, 3119, 3488, 3537, 3618 |
| Bso31I | GGTCTC | 2 cut(s) | 231, 544 |
| BsoBI | CYCGRG | 2 cut(s) | 1458, 3229 |
| Bsp119I | TTCGAA | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1255, 1639, 1650, 2144, 2477, 2988 |
| Bsp1407I | TGTACA | 3 cut(s) | 1413, 3328, 3576 |
| Bsp19I | CCATGG | 2 cut(s) | 242, 1163 |
| BspACI | CCGC | 5 cut(s) | 235, 351, 946, 2941, 3489 |
| BspANI | GGCC | 8 cut(s) | 241, 418, 2060, 3017, 3119, 3488, 3537, 3618 |
| BspCNI | CTCAG | 3 cut(s) | 268, 2782, 3107 |
| BspDI | ATCGAT | 1 cut(s) | 1977 |
| BspFNI | CGCG | 3 cut(s) | 351, 609, 3360 |
| BspHI | TCATGA | 2 cut(s) | 15, 3481 |
| BspLI | GGNNCC | 8 cut(s) | 60, 912, 1161, 1407, 2919, 2920, 3041, 3236 |
| BspMAI | CTGCAG | 2 cut(s) | 2259, 2500 |
| BspMI | ACCTGC | 3 cut(s) | 380, 2248, 2960 |
| BspPI | GGATC | 8 cut(s) | 745, 1123, 1721, 2165, 2643, 2954, 3062, 3153 |
| BspT104I | TTCGAA | 1 cut(s) | 593 |
| BspT107I | GGYRCC | 4 cut(s) | 58, 1159, 1405, 3234 |
| BspTI | CTTAAG | 2 cut(s) | 1681, 3586 |
| BspTNI | GGTCTC | 2 cut(s) | 231, 544 |
| BsrDI | GCAATG | 2 cut(s) | 2868, 3351 |
| BsrFI | RCCGGY | 1 cut(s) | 3491 |
| BsrGI | TGTACA | 3 cut(s) | 1413, 3328, 3576 |
| BssAI | RCCGGY | 1 cut(s) | 3491 |
| BssECI | CCNNGG | 7 cut(s) | 242, 1163, 1276, 1785, 2177, 2730, 3278 |
| BssNAI | GTATAC | 1 cut(s) | 2029 |
| BssSI | CACGAG | 1 cut(s) | 1819 |
| BssT1I | CCWWGG | 3 cut(s) | 242, 1163, 2730 |
| Bst1107I | GTATAC | 1 cut(s) | 2029 |
| Bst2BI | CACGAG | 1 cut(s) | 1819 |
| Bst4CI | ACNGT | 7 cut(s) | 177, 261, 1484, 2780, 3076, 3576, 3607 |
| Bst6I | CTCTTC | 5 cut(s) | 450, 547, 1296, 1967, 3636 |
| BstAFI | CTTAAG | 2 cut(s) | 1681, 3586 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1842 |
| BstAUI | TGTACA | 3 cut(s) | 1413, 3328, 3576 |
| BstBAI | YACGTR | 1 cut(s) | 1739 |
| BstBI | TTCGAA | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 5 cut(s) | 490, 1202, 1873, 1906, 3493 |
| BstDEI | CTNAG | 7 cut(s) | 276, 1717, 1950, 2237, 2357, 2790, 3094 |
| BstDSI | CCRYGG | 2 cut(s) | 242, 1163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 726 |
| BstFNI | CGCG | 3 cut(s) | 351, 609, 3360 |
| BstH2I | RGCGCY | 3 cut(s) | 907, 1617, 1950 |
| BstHHI | GCGC | 3 cut(s) | 906, 1616, 1949 |
| BstMAI | GTCTC | 5 cut(s) | 231, 544, 581, 2277, 3097 |
| BstNSI | RCATGY | 3 cut(s) | 1208, 1243, 1908 |
| BstSFI | CTRYAG | 4 cut(s) | 1551, 2255, 2406, 2496 |
| BstSLI | GKGCMC | 1 cut(s) | 1639 |
| BstUI | CGCG | 3 cut(s) | 351, 609, 3360 |
| BstV1I | GCAGC | 5 cut(s) | 1603, 1880, 2482, 2537, 3283 |
| BstV2I | GAAGAC | 3 cut(s) | 42, 2286, 3256 |
| BstX2I | RGATCY | 5 cut(s) | 737, 1115, 1713, 2047, 2170 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2449 |
| BstYI | RGATCY | 5 cut(s) | 737, 1115, 1713, 2047, 2170 |
| BstZ17I | GTATAC | 1 cut(s) | 2029 |
| Bsu15I | ATCGAT | 1 cut(s) | 1977 |
| BsuI | GTATCC | 1 cut(s) | 1283 |
| BsuRI | GGCC | 8 cut(s) | 241, 418, 2060, 3017, 3119, 3488, 3537, 3618 |
| BsuTUI | ATCGAT | 1 cut(s) | 1977 |
| BtgI | CCRYGG | 2 cut(s) | 242, 1163 |
| BtsI | GCAGTG | 2 cut(s) | 1144, 2241 |
| BtsIMutI | CAGTG | 6 cut(s) | 1144, 1416, 2003, 2241, 3155, 3572 |
| BveI | ACCTGC | 3 cut(s) | 380, 2248, 2960 |
| Cac8I | GCNNGC | 5 cut(s) | 490, 1202, 1873, 1906, 3493 |
| CaiI | CAGNNNCTG | 2 cut(s) | 147, 1871 |
| CciI | TCATGA | 2 cut(s) | 15, 3481 |
| CfoI | GCGC | 3 cut(s) | 906, 1616, 1949 |
| Cfr10I | RCCGGY | 1 cut(s) | 3491 |
| Cfr13I | GGNCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| ClaI | ATCGAT | 1 cut(s) | 1977 |
| CseI | GACGC | 3 cut(s) | 598, 2395, 2531 |
| CsiI | ACCWGGT | 1 cut(s) | 784 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2823, 2858 |
| DdeI | CTNAG | 7 cut(s) | 276, 1717, 1950, 2237, 2357, 2790, 3094 |
| DraI | TTTAAA | 2 cut(s) | 1233, 2167 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 558 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 558 |
| Eam1104I | CTCTTC | 5 cut(s) | 450, 547, 1296, 1967, 3636 |
| EarI | CTCTTC | 5 cut(s) | 450, 547, 1296, 1967, 3636 |
| EciI | GGCGGA | 2 cut(s) | 250, 961 |
| Ecl136II | GAGCTC | 2 cut(s) | 1648, 2142 |
| Eco130I | CCWWGG | 3 cut(s) | 242, 1163, 2730 |
| Eco147I | AGGCCT | 3 cut(s) | 418, 3537, 3618 |
| Eco24I | GRGCYC | 3 cut(s) | 1650, 2144, 2477 |
| Eco31I | GGTCTC | 2 cut(s) | 231, 544 |
| Eco32I | GATATC | 2 cut(s) | 1035, 2415 |
| Eco47I | GGWCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| Eco47III | AGCGCT | 2 cut(s) | 905, 1948 |
| Eco53kI | GAGCTC | 2 cut(s) | 1648, 2142 |
| Eco57I | CTGAAG | 7 cut(s) | 231, 474, 614, 1041, 1679, 2319, 3453 |
| Eco72I | CACGTG | 1 cut(s) | 1739 |
| Eco88I | CYCGRG | 2 cut(s) | 1458, 3229 |
| EcoICRI | GAGCTC | 2 cut(s) | 1648, 2142 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 726 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2918 |
| EcoRV | GATATC | 2 cut(s) | 1035, 2415 |
| EcoT14I | CCWWGG | 3 cut(s) | 242, 1163, 2730 |
| EcoT22I | ATGCAT | 2 cut(s) | 1245, 1906 |
| EcoT38I | GRGCYC | 3 cut(s) | 1650, 2144, 2477 |
| ErhI | CCWWGG | 3 cut(s) | 242, 1163, 2730 |
| Esp3I | CGTCTC | 1 cut(s) | 3097 |
| FaqI | GGGAC | 4 cut(s) | 19, 1587, 2904, 3372 |
| FauNDI | CATATG | 2 cut(s) | 514, 2290 |
| FbaI | TGATCA | 1 cut(s) | 304 |
| FblI | GTMKAC | 2 cut(s) | 621, 2028 |
| Fnu4HI | GCNGC | 6 cut(s) | 1617, 1869, 2496, 2526, 3272, 3489 |
| FriOI | GRGCYC | 3 cut(s) | 1650, 2144, 2477 |
| Fsp4HI | GCNGC | 6 cut(s) | 1617, 1869, 2496, 2526, 3272, 3489 |
| FspBI | CTAG | 8 cut(s) | 1104, 2040, 2045, 2562, 2969, 3510, 3557, 3620 |
| GlaI | GCGC | 3 cut(s) | 905, 1615, 1948 |
| GluI | GCNGC | 6 cut(s) | 1617, 1869, 2496, 2526, 3272, 3489 |
| GsaI | CCCAGC | 3 cut(s) | 910, 2691, 3196 |
| GsuI | CTGGAG | 3 cut(s) | 420, 747, 1455 |
| HaeII | RGCGCY | 3 cut(s) | 907, 1617, 1950 |
| HaeIII | GGCC | 8 cut(s) | 241, 418, 2060, 3017, 3119, 3488, 3537, 3618 |
| HapII | CCGG | 5 cut(s) | 65, 1038, 3043, 3120, 3492 |
| HgaI | GACGC | 3 cut(s) | 598, 2395, 2531 |
| HhaI | GCGC | 3 cut(s) | 906, 1616, 1949 |
| Hin6I | GCGC | 3 cut(s) | 904, 1614, 1947 |
| HinP1I | GCGC | 3 cut(s) | 904, 1614, 1947 |
| HincII | GTYRAC | 4 cut(s) | 622, 1510, 2214, 2341 |
| HindII | GTYRAC | 4 cut(s) | 622, 1510, 2214, 2341 |
| HpaI | GTTAAC | 1 cut(s) | 1510 |
| HpaII | CCGG | 5 cut(s) | 65, 1038, 3043, 3120, 3492 |
| HphI | GGTGA | 9 cut(s) | 115, 947, 1208, 2649, 2941, 3170, 3214, 3309, 3455 |
| Hpy166II | GTNNAC | 8 cut(s) | 622, 798, 1414, 1510, 2029, 2214, 2341, 2726 |
| Hpy8I | GTNNAC | 8 cut(s) | 622, 798, 1414, 1510, 2029, 2214, 2341, 2726 |
| Hpy99I | CGWCG | 3 cut(s) | 3469, 3611, 3660 |
| HpyAV | CCTTC | 6 cut(s) | 2003, 2003, 2908, 3269, 3465, 3541 |
| HpyCH4III | ACNGT | 7 cut(s) | 177, 261, 1484, 2780, 3076, 3576, 3607 |
| HpyCH4IV | ACGT | 3 cut(s) | 1512, 1738, 3090 |
| HpyF3I | CTNAG | 7 cut(s) | 276, 1717, 1950, 2237, 2357, 2790, 3094 |
| HpySE526I | ACGT | 3 cut(s) | 1512, 1738, 3090 |
| HspAI | GCGC | 3 cut(s) | 904, 1614, 1947 |
| KflI | GGGWCCC | 1 cut(s) | 2918 |
| KpnI | GGTACC | 1 cut(s) | 1409 |
| KroI | GCCGGC | 1 cut(s) | 3491 |
| KroNI | GCCGGC | 1 cut(s) | 3493 |
| Ksp22I | TGATCA | 1 cut(s) | 304 |
| KspAI | GTTAAC | 1 cut(s) | 1510 |
| Lsp1109I | GCAGC | 5 cut(s) | 1603, 1880, 2482, 2537, 3283 |
| MabI | ACCWGGT | 1 cut(s) | 784 |
| MaeI | CTAG | 8 cut(s) | 1104, 2040, 2045, 2562, 2969, 3510, 3557, 3620 |
| MaeII | ACGT | 3 cut(s) | 1512, 1738, 3090 |
| MaeIII | GTNAC | 8 cut(s) | 881, 1366, 2515, 2750, 2774, 3005, 3590, 3622 |
| MfeI | CAATTG | 2 cut(s) | 1492, 2158 |
| MflI | RGATCY | 5 cut(s) | 737, 1115, 1713, 2047, 2170 |
| MhlI | GDGCHC | 6 cut(s) | 1255, 1639, 1650, 2144, 2477, 2988 |
| MlyI | GAGTC | 5 cut(s) | 83, 627, 2988, 3222, 3292 |
| Mph1103I | ATGCAT | 2 cut(s) | 1245, 1906 |
| MroNI | GCCGGC | 1 cut(s) | 3491 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2232, 3645 |
| MslI | CAYNNNNRTG | 4 cut(s) | 704, 1248, 2721, 2770 |
| MspA1I | CMGCKG | 2 cut(s) | 1871, 2528 |
| MspCI | CTTAAG | 2 cut(s) | 1681, 3586 |
| MspI | CCGG | 5 cut(s) | 65, 1038, 3043, 3120, 3492 |
| MunI | CAATTG | 2 cut(s) | 1492, 2158 |
| Mva1269I | GAATGC | 2 cut(s) | 1838, 3481 |
| MvnI | CGCG | 3 cut(s) | 351, 609, 3360 |
| NaeI | GCCGGC | 1 cut(s) | 3493 |
| NciI | CCSGG | 2 cut(s) | 66, 3044 |
| NcoI | CCATGG | 2 cut(s) | 242, 1163 |
| NdeI | CATATG | 2 cut(s) | 514, 2290 |
| NgoMIV | GCCGGC | 1 cut(s) | 3491 |
| NlaIV | GGNNCC | 8 cut(s) | 60, 912, 1161, 1407, 2919, 2920, 3041, 3236 |
| NmeAIII | GCCGAG | 1 cut(s) | 2282 |
| NmuCI | GTSAC | 5 cut(s) | 2515, 2750, 2774, 3590, 3622 |
| NsiI | ATGCAT | 2 cut(s) | 1245, 1906 |
| NspI | RCATGY | 3 cut(s) | 1208, 1243, 1908 |
| NspV | TTCGAA | 1 cut(s) | 593 |
| PaeI | GCATGC | 1 cut(s) | 1908 |
| PaeR7I | CTCGAG | 2 cut(s) | 1458, 3229 |
| PagI | TCATGA | 2 cut(s) | 15, 3481 |
| PaqCI | CACCTGC | 1 cut(s) | 2960 |
| PceI | AGGCCT | 3 cut(s) | 418, 3537, 3618 |
| PctI | GAATGC | 2 cut(s) | 1838, 3481 |
| PdiI | GCCGGC | 1 cut(s) | 3493 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2232, 3645 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 407, 3244 |
| PfoI | TCCNGGA | 3 cut(s) | 426, 1432, 2744 |
| PkrI | GCNGC | 6 cut(s) | 1618, 1870, 2497, 2527, 3273, 3490 |
| PleI | GAGTC | 5 cut(s) | 82, 626, 2987, 3221, 3291 |
| PmaCI | CACGTG | 1 cut(s) | 1739 |
| PmlI | CACGTG | 1 cut(s) | 1739 |
| PpsI | GAGTC | 5 cut(s) | 82, 626, 2987, 3221, 3291 |
| Ppu21I | YACGTR | 1 cut(s) | 1739 |
| PpuMI | RGGWCCY | 1 cut(s) | 2918 |
| PshBI | ATTAAT | 1 cut(s) | 3498 |
| PsiI | TTATAA | 1 cut(s) | 267 |
| Psp124BI | GAGCTC | 2 cut(s) | 1650, 2144 |
| Psp1406I | AACGTT | 1 cut(s) | 1512 |
| Psp5II | RGGWCCY | 1 cut(s) | 2918 |
| PspCI | CACGTG | 1 cut(s) | 1739 |
| PspFI | CCCAGC | 3 cut(s) | 906, 2687, 3192 |
| PspN4I | GGNNCC | 8 cut(s) | 60, 912, 1161, 1407, 2919, 2920, 3041, 3236 |
| PspPI | GGNCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| PspPPI | RGGWCCY | 1 cut(s) | 2918 |
| PspXI | VCTCGAGB | 1 cut(s) | 1458 |
| PstI | CTGCAG | 2 cut(s) | 2259, 2500 |
| PstNI | CAGNNNCTG | 2 cut(s) | 147, 1871 |
| PsuI | RGATCY | 5 cut(s) | 737, 1115, 1713, 2047, 2170 |
| PvuII | CAGCTG | 2 cut(s) | 1871, 2528 |
| RseI | CAYNNNNRTG | 4 cut(s) | 704, 1248, 2721, 2770 |
| SacI | GAGCTC | 2 cut(s) | 1650, 2144 |
| SalI | GTCGAC | 1 cut(s) | 620 |
| SatI | GCNGC | 6 cut(s) | 1617, 1869, 2496, 2526, 3272, 3489 |
| Sau96I | GGNCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| ScaI | AGTACT | 4 cut(s) | 163, 2125, 3102, 3374 |
| SchI | GAGTC | 5 cut(s) | 83, 627, 2988, 3222, 3292 |
| SduI | GDGCHC | 6 cut(s) | 1255, 1639, 1650, 2144, 2477, 2988 |
| SexAI | ACCWGGT | 1 cut(s) | 784 |
| SfcI | CTRYAG | 4 cut(s) | 1551, 2255, 2406, 2496 |
| Sfr274I | CTCGAG | 2 cut(s) | 1458, 3229 |
| SfuI | TTCGAA | 1 cut(s) | 593 |
| SinI | GGWCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| SlaI | CTCGAG | 2 cut(s) | 1458, 3229 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 704, 1248, 2721, 2770 |
| SpeI | ACTAGT | 1 cut(s) | 3509 |
| SphI | GCATGC | 1 cut(s) | 1908 |
| SseBI | AGGCCT | 3 cut(s) | 418, 3537, 3618 |
| SsiI | CCGC | 5 cut(s) | 235, 351, 946, 2941, 3489 |
| SspI | AATATT | 3 cut(s) | 928, 941, 2347 |
| SspMI | CTAG | 8 cut(s) | 1104, 2040, 2045, 2562, 2969, 3510, 3557, 3620 |
| SstI | GAGCTC | 2 cut(s) | 1650, 2144 |
| StuI | AGGCCT | 3 cut(s) | 418, 3537, 3618 |
| StyI | CCWWGG | 3 cut(s) | 242, 1163, 2730 |
| TaaI | ACNGT | 7 cut(s) | 177, 261, 1484, 2780, 3076, 3576, 3607 |
| TaiI | ACGT | 3 cut(s) | 1515, 1741, 3093 |
| TaqI | TCGA | 8 cut(s) | 593, 621, 637, 1459, 1977, 1998, 3066, 3230 |
| TatI | WGTACW | 9 cut(s) | 161, 1224, 1413, 2123, 3051, 3100, 3328, 3372, 3576 |
| TauI | GCSGC | 1 cut(s) | 3491 |
| TscAI | CASTG | 6 cut(s) | 1144, 1416, 2010, 2248, 3155, 3579 |
| TseFI | GTSAC | 5 cut(s) | 2515, 2750, 2774, 3590, 3622 |
| TseI | GCWGC | 5 cut(s) | 1616, 1868, 2495, 2525, 3271 |
| Tsp45I | GTSAC | 5 cut(s) | 2515, 2750, 2774, 3590, 3622 |
| TspGWI | ACGGA | 3 cut(s) | 980, 1955, 2544 |
| TspRI | CASTG | 6 cut(s) | 1144, 1416, 2010, 2248, 3155, 3579 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 407, 3244 |
| Vha464I | CTTAAG | 2 cut(s) | 1681, 3586 |
| VpaK11BI | GGWCC | 5 cut(s) | 788, 2201, 2702, 2918, 3122 |
| VspI | ATTAAT | 1 cut(s) | 3498 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 726 |
| XapI | RAATTY | 6 cut(s) | 47, 310, 753, 1295, 1766, 2972 |
| XbaI | TCTAGA | 1 cut(s) | 2968 |
| XceI | RCATGY | 3 cut(s) | 1208, 1243, 1908 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2449, 3179 |
| XhoI | CTCGAG | 2 cut(s) | 1458, 3229 |
| XmiI | GTMKAC | 2 cut(s) | 621, 2028 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2232, 3645 |
| XspI | CTAG | 8 cut(s) | 1104, 2040, 2045, 2562, 2969, 3510, 3557, 3620 |
| ZrmI | AGTACT | 4 cut(s) | 163, 2125, 3102, 3374 |
| Zsp2I | ATGCAT | 2 cut(s) | 1245, 1906 |