Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Forward (+)

59346303 .. 59351770

Gene Structure 5468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAACGCGAAGAACACCCCCACAGAGACCACCGGCGAGTCTCGATTCTTGGGAACTATCTCCGCCTCATCGATTCAAAACCTCCACCCCAGATCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCGCATCAATTGCCCCAAAATTGCTCGCCCTCGAAAGCGTTTCGCCGAGCTCGTTAAAGGACAAGGTTTATAGGGTCTTCTGCAGGGAAAAGCGTAAGCTCGCCGGTAGAAAGGTACATGGTGACATGCATATTCTAGACATTGCTGTGGATTTGCCTTCTGTGACTGAAATTTTCAGGTCAAAATATTCAACTACTCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

114

Amino Acids

12.56

Weight (kDa)

10.07

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	63, 141
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	77, 330
AluBI	AGCT	2 cut(s)	189, 238
AluI	AGCT	2 cut(s)	189, 238
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	20, 45
AlwI	GGATC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	191
BccI	CCATC	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	20, 45
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	220
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	20
Bse118I	RCCGGY	2 cut(s)	32, 242
Bse3DI	GCAATG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	33, 243
BsmAI	GTCTC	2 cut(s)	20, 45
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	2 cut(s)	63, 141
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	8
BspMAI	CTGCAG	1 cut(s)	224
BspPI	GGATC	1 cut(s)	87
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	2 cut(s)	32, 242
BssAI	RCCGGY	2 cut(s)	32, 242
BssMI	GATC	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	165, 240
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	2 cut(s)	20, 45
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	165, 240
Cfr10I	RCCGGY	2 cut(s)	32, 242
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	257, 265
CviJI	RGCY	3 cut(s)	129, 189, 238
CviKI_1	RGCY	3 cut(s)	129, 189, 238
CviQI	GTAC	1 cut(s)	254
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	2 cut(s)	260, 268
FaiI	YATR	4 cut(s)	210, 258, 266, 270
FatI	CATG	2 cut(s)	256, 264
Fnu4HI	GCNGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	141
HapII	CCGG	2 cut(s)	33, 243
Hin1II	CATG	2 cut(s)	260, 268
HinfI	GANTC	3 cut(s)	38, 45, 73
HpaII	CCGG	2 cut(s)	33, 243
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	2 cut(s)	42, 275
HpyAV	CCTTC	2 cut(s)	130, 306
HpyCH4V	TGCA	2 cut(s)	222, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	260, 268
Kzo9I	GATC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	46, 103, 208, 256, 301
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	260, 301
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	4 cut(s)	22, 115, 208, 329
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	4 cut(s)	135, 147, 158, 309
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	76, 92, 179
Mph1103I	ATGCAT	1 cut(s)	270
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	2 cut(s)	33, 243
MunI	CAATTG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	260, 268
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	260, 301
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	45, 73
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	191
PstI	CTGCAG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	84, 191, 207, 240, 255, 320
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	220
SgrAI	CRCCGGYG	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	135, 147, 158, 309
SsiI	CCGC	2 cut(s)	63, 141
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	191
TaqI	TCGA	3 cut(s)	43, 71, 171
TasI	AATT	4 cut(s)	135, 147, 158, 309
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	2 cut(s)	45, 73
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	260, 301
Tsp45I	GTSAC	2 cut(s)	260, 301
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	126
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	274
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.