Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

34336317 .. 34337958

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCAGTAATGGAGAGAGAGATATATTACCTTTCGCGAAGGCACTGGAGGAGATGTTGATGTTATATGATGAAGACTTGAAAGGATTACTAATTCAAAGAACACAGGTTGTAGACTGTTTGGTACAGTTTTTCATGATTGATCTCTGTCGAGTTGTTGGGTTGTGCGAGTTGTTTGAAGATAGGAGATGGGATGAGATTGTATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTTTCCGGATTTTCTTCTAAAGCTTGATGAACTCTCTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGATAAATTGGCTTCAGTGCCAGATCTCACTATTAATATTGAGGATAACCTACAAATGGAAATGAAGTGCACAAGCTATTCGTCTCAAATGGTAACAAATGTTAATGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID

Protein Analysis

153

Amino Acids

17.8

Weight (kDa)

4.49

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	82, 98, 179, 214
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	3 cut(s)	259, 387, 453
AluI	AGCT	3 cut(s)	259, 387, 453
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	2 cut(s)	3, 422
ApaLI	GTGCAC	1 cut(s)	379
AseI	ATTAAT	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	308, 422
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	383
BccI	CCATC	3 cut(s)	183, 215, 413
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	214
BglII	AGATCT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	308, 422
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	68, 447
BpuEI	CTTGAG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	6, 51
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	199, 226
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	6, 51
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	5, 424
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	5, 424
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	142, 334
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	2 cut(s)	5, 424
BspEI	TCCGGA	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	6, 51
BssMI	GATC	2 cut(s)	142, 334
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	119, 129
BstF5I	GGATG	2 cut(s)	199, 226
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	145, 337
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	142, 334
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstSLI	GKGCMC	1 cut(s)	383
BstUI	CGCG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	5, 424
BtsCI	GGATG	2 cut(s)	199, 226
BtsIMutI	CAGTG	2 cut(s)	44, 333
BtuMI	TCGCGA	1 cut(s)	38
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	308, 422
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	5, 259, 323, 387, 424, 453
CviKI_1	RGCY	6 cut(s)	5, 259, 323, 387, 424, 453
CviQI	GTAC	1 cut(s)	125
DpnI	GATC	2 cut(s)	144, 336
DpnII	GATC	2 cut(s)	142, 334
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	1 cut(s)	139
FaiI	YATR	6 cut(s)	26, 67, 69, 137, 285, 303
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	2 cut(s)	206, 233
GsuI	CTGGAG	2 cut(s)	68, 447
HaeIII	GGCC	2 cut(s)	5, 424
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	115, 381
Hpy188III	TCNNGA	3 cut(s)	37, 136, 242
Hpy8I	GTNNAC	2 cut(s)	115, 381
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	119, 129
HpyCH4V	TGCA	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	139
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	142, 334
LpnPI	CCDG	8 cut(s)	19, 32, 92, 255, 324, 345, 411, 438
LweI	GCATC	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	2 cut(s)	144, 336
MboI	GATC	2 cut(s)	142, 334
MboII	GAAGA	5 cut(s)	86, 191, 242, 445, 448
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	93, 215, 235, 317
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	43, 217, 219, 346
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	345, 414, 460
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	38
NdeII	GATC	2 cut(s)	142, 334
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	309
NruI	TCGCGA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	308, 422
PspPPI	RGGWCCY	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	334
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	345, 414, 460
Sau3AI	GATC	2 cut(s)	142, 334
Sau96I	GGNCC	2 cut(s)	308, 422
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	7 cut(s)	34, 111, 261, 313, 363, 389, 455
SfaNI	GCATC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	4 cut(s)	93, 215, 235, 317
SspI	AATATT	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	119, 129
TaqI	TCGA	1 cut(s)	151
TasI	AATT	4 cut(s)	93, 215, 235, 317
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	3 cut(s)	345, 414, 460
Tru9I	TTAA	3 cut(s)	345, 414, 460
TscAI	CASTG	2 cut(s)	51, 333
TspDTI	ATGAA	6 cut(s)	87, 124, 269, 279, 300, 389
TspRI	CASTG	2 cut(s)	51, 333
VneI	GTGCAC	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.