RchiOBHm_Chr3g0457251

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001197
Physical Location & Seq
Forward (+)
6454997 .. 6458199
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42400

Sequence Viewer

Length: 1167 bp
ATGCCAATGAAGAATGTGAGAGAGGACACCAGAGATAGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGCAAACTGATCAATCCCAATGAGCCCAATTCTGGGTTTCAGGGGAAAATCATGTTTGACAGCTCTGATAGTGAGAGTTTCTATGAAAGGCTAGGCAAGTTGAATGAGTCACTTGGATACAATCTTGTCTTTGATGTCAGACAAACCAAACTGAATCTGCATCTCTTTTACAAGGAAGTCACTCTCAGGGGAGGCTTTAATCAGGTGAACAAAGATAGGAGATGGGATGAGATTGCATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTATCCAGATATTCTTCTAAAGCTTTATGCACTCTTTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGAGAAAGTGGCTTCAACACCAGATCTCACTATTGATATTGAGGATAGCCCCCGAATGGAAATGAAGTGCACCAATCATTCATCTCAAATGGTAACAAATGTTGAAGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTGTTCTCAATCAATGTCGACAGGTTCGGCGTCTGCAGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGATATGCACTCATCGGCAGAAAACCAACTAGCAGTACCCGAAGCAGCACAGGAGCAGACCCCCAAGCTGCACCCGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAATTCAATCTAATAAAGGCCAGAATCTCCGACAACTGGCCAATGATGCATGGAATCAGCTATCTGAGGCTGAGAAACAGCCCTTCCTTGAGCAAAGTATCAAGGAAAAGGAAAGCTTAGCTAACAAAGTGGCTGTTGATGATGAACAAAACCATGTCATGGAAAGTGCTGATTTGGAGAACAAGCAGGCTTCGCCGGATGGTGACTACCATGTGATTTTGGATCCAAGTGATGCAGAAAAATCTATTGAGGTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

388

Amino Acids

44.05

Weight (kDa)

6.41

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 51 - 134 7.1e-11 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1066
AccI GTMKAC 1 cut(s) 584
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 1124, 1137
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 1 cut(s) 909
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 2 cut(s) 717, 813
AfiI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1066
AgsI TTSAA 5 cut(s) 184, 328, 441, 530, 914
AjnI CCWGG 3 cut(s) 538, 815, 838
AloI GAACNNNNNNTCC 2 cut(s) 766, 798
AluBI AGCT 9 cut(s) 144, 373, 567, 649, 748, 794, 967, 1023, 1028
AluI AGCT 9 cut(s) 144, 373, 567, 649, 748, 794, 967, 1023, 1028
Alw21I GWGCWC 2 cut(s) 497, 847
Alw44I GTGCAC 1 cut(s) 493
AlwI GGATC 2 cut(s) 1124, 1137
AoxI GGCC 3 cut(s) 536, 925, 945
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 649, 725, 748
ApoI RAATTY 1 cut(s) 909
AspS9I GGNCC 2 cut(s) 422, 536
AsuHPI GGTGA 2 cut(s) 298, 1121
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 497
BalI TGGCCA 1 cut(s) 947
BamHI GGATCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 497, 847
BbvI GCAGC 3 cut(s) 636, 735, 737
BccI CCATC 4 cut(s) 297, 329, 527, 1100
BciT130I CCWGG 3 cut(s) 540, 817, 840
BciVI GTATCC 2 cut(s) 191, 849
BclI TGATCA 1 cut(s) 90
BfaI CTAG 2 cut(s) 173, 710
BfmI CTRYAG 1 cut(s) 600
BfuI GTATCC 2 cut(s) 191, 849
BglII AGATCT 1 cut(s) 448
BisI GCNGC 4 cut(s) 49, 650, 726, 749
BlpI GCTNAGC 1 cut(s) 1024
BlsI GCNGC 4 cut(s) 50, 651, 727, 750
Bme1390I CCNGG 3 cut(s) 540, 817, 840
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 422, 536
BmiI GGNNCC 2 cut(s) 423, 1131
BmrFI CCNGG 3 cut(s) 540, 817, 840
BmsI GCATC 6 cut(s) 250, 326, 543, 797, 943, 1129
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 561
Bpu1102I GCTNAGC 1 cut(s) 1024
BpuEI CTTGAG 2 cut(s) 542, 1016
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 815
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1066
Bse1I ACTGG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 540, 817, 840
BseDI CCNNGG 1 cut(s) 815
BseGI GGATG 5 cut(s) 313, 317, 340, 834, 1111
BseLI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1066
BseMII CTCAG 6 cut(s) 48, 280, 417, 669, 963, 969
BseNI ACTGG 1 cut(s) 948
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 3 cut(s) 636, 735, 737
BseYI CCCAGC 1 cut(s) 645
BsgI GTGCAG 2 cut(s) 635, 734
BshFI GGCC 3 cut(s) 538, 927, 947
BsiHKAI GWGCWC 2 cut(s) 497, 847
BsiSI CCGG 1 cut(s) 1103
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1066
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 3 cut(s) 538, 927, 947
Bsp1286I GDGCHC 3 cut(s) 108, 497, 847
Bsp143I GATC 4 cut(s) 42, 90, 448, 1129
Bsp1720I GCTNAGC 1 cut(s) 1024
BspACI CCGC 1 cut(s) 48
BspANI GGCC 3 cut(s) 538, 927, 947
BspCNI CTCAG 6 cut(s) 49, 279, 418, 668, 964, 970
BspLI GGNNCC 2 cut(s) 423, 1131
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 2 cut(s) 1124, 1137
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 1 cut(s) 815
BssMI GATC 4 cut(s) 42, 90, 448, 1129
BssNI GRCGYC 1 cut(s) 596
Bst2UI CCWGG 3 cut(s) 540, 817, 840
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 7 cut(s) 57, 266, 426, 655, 972, 978, 1024
BstEII GGTNACC 1 cut(s) 866
BstF5I GGATG 5 cut(s) 313, 317, 340, 834, 1111
BstKTI GATC 4 cut(s) 45, 93, 451, 1132
BstMBI GATC 4 cut(s) 42, 90, 448, 1129
BstMWI GCNNNNNNNGC 4 cut(s) 45, 623, 953, 1099
BstNI CCWGG 3 cut(s) 540, 817, 840
BstPI GGTNACC 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 538, 815, 838
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 636, 735, 737
BstX2I RGATCY 2 cut(s) 448, 1129
BstYI RGATCY 2 cut(s) 448, 1129
BsuI GTATCC 2 cut(s) 191, 849
BsuRI GGCC 3 cut(s) 538, 927, 947
BtsCI GGATG 5 cut(s) 313, 317, 340, 834, 1111
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 868
Cac8I GCNNGC 1 cut(s) 1095
Cfr13I GGNCC 2 cut(s) 422, 536
CseI GACGC 1 cut(s) 585
Csp6I GTAC 2 cut(s) 716, 812
CviAII CATG 5 cut(s) 133, 957, 1061, 1066, 1118
CviQI GTAC 2 cut(s) 716, 812
DdeI CTNAG 7 cut(s) 57, 266, 426, 655, 972, 978, 1024
DpnI GATC 4 cut(s) 44, 92, 450, 1131
DpnII GATC 4 cut(s) 42, 90, 448, 1129
EaeI YGGCCR 1 cut(s) 945
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 866
EcoRII CCWGG 3 cut(s) 538, 815, 838
EcoT22I ATGCAT 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 5 cut(s) 136, 960, 1064, 1069, 1121
FalI AAGNNNNNCTT 2 cut(s) 1007, 1039
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 132, 956, 1060, 1065, 1117
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 4 cut(s) 49, 650, 726, 749
FokI GGATG 5 cut(s) 304, 320, 347, 841, 1118
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 49, 650, 726, 749
FspBI CTAG 2 cut(s) 173, 710
GluI GCNGC 4 cut(s) 49, 650, 726, 749
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 538, 927, 947
HapII CCGG 1 cut(s) 1103
HgaI GACGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 5 cut(s) 136, 960, 1064, 1069, 1121
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 2 cut(s) 371, 1021
HinfI GANTC 5 cut(s) 188, 235, 343, 931, 961
HpaII CCGG 1 cut(s) 1103
HphI GGTGA 2 cut(s) 298, 1121
Hpy166II GTNNAC 3 cut(s) 289, 495, 585
Hpy188I TCNGA 6 cut(s) 58, 148, 221, 658, 938, 973
Hpy188III TCNNGA 2 cut(s) 356, 883
Hpy8I GTNNAC 3 cut(s) 289, 495, 585
HpyAV CCTTC 1 cut(s) 1000
HpyCH4III ACNGT 1 cut(s) 804
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 623, 953, 1099
HpyF3I CTNAG 7 cut(s) 57, 266, 426, 655, 972, 978, 1024
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 5 cut(s) 136, 960, 1064, 1069, 1121
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 42, 90, 448, 1129
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 3 cut(s) 636, 735, 737
LweI GCATC 6 cut(s) 250, 326, 543, 797, 943, 1129
MaeI CTAG 2 cut(s) 173, 710
MaeIII GTNAC 5 cut(s) 189, 259, 517, 866, 1109
MalI GATC 4 cut(s) 44, 92, 450, 1131
MboI GATC 4 cut(s) 42, 90, 448, 1129
MboII GAAGA 8 cut(s) 22, 356, 542, 559, 562, 677, 769, 844
MflI RGATCY 2 cut(s) 448, 1129
MhlI GDGCHC 3 cut(s) 108, 497, 847
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 5 cut(s) 109, 329, 349, 909, 1162
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 961
MnlI CCTC 9 cut(s) 16, 266, 331, 333, 460, 765, 773, 967, 1150
Mox20I TGGCCA 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 958
MscI TGGCCA 1 cut(s) 947
MseI TTAA 3 cut(s) 279, 902, 1165
Msp20I TGGCCA 1 cut(s) 947
MspA1I CMGCKG 3 cut(s) 48, 649, 794
MspI CCGG 1 cut(s) 1103
MspR9I CCNGG 3 cut(s) 540, 817, 840
MvaI CCWGG 3 cut(s) 540, 817, 840
MwoI GCNNNNNNNGC 4 cut(s) 45, 623, 953, 1099
NdeII GATC 4 cut(s) 42, 90, 448, 1129
NlaIII CATG 5 cut(s) 136, 960, 1064, 1069, 1121
NlaIV GGNNCC 2 cut(s) 423, 1131
NmuCI GTSAC 3 cut(s) 189, 259, 1109
NsiI ATGCAT 1 cut(s) 958
PfeI GAWTC 4 cut(s) 235, 343, 931, 961
PflMI CCANNNNNTGG 1 cut(s) 1066
PkrI GCNGC 4 cut(s) 50, 651, 727, 750
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 538, 815, 838
PspEI GGTNACC 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 3 cut(s) 538, 815, 838
PspN4I GGNNCC 2 cut(s) 423, 1131
PspPI GGNCC 2 cut(s) 422, 536
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 448, 1129
PvuII CAGCTG 2 cut(s) 649, 794
RsaI GTAC 2 cut(s) 717, 813
RsaNI GTAC 2 cut(s) 716, 812
SalI GTCGAC 1 cut(s) 583
SaqAI TTAA 3 cut(s) 279, 902, 1165
SatI GCNGC 4 cut(s) 49, 650, 726, 749
Sau3AI GATC 4 cut(s) 42, 90, 448, 1129
Sau96I GGNCC 2 cut(s) 422, 536
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 540, 817, 840
SduI GDGCHC 3 cut(s) 108, 497, 847
SfaNI GCATC 6 cut(s) 250, 326, 543, 797, 943, 1129
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 557, 995
SmoI CTYRAG 2 cut(s) 557, 995
Sse9I AATT 5 cut(s) 109, 329, 349, 909, 1162
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 173, 710
StyD4I CCNGG 3 cut(s) 538, 815, 838
TaaI ACNGT 1 cut(s) 804
TaqI TCGA 2 cut(s) 584, 847
TasI AATT 5 cut(s) 109, 329, 349, 909, 1162
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 4 cut(s) 235, 343, 931, 961
Tru1I TTAA 3 cut(s) 279, 902, 1165
Tru9I TTAA 3 cut(s) 279, 902, 1165
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 3 cut(s) 189, 259, 1109
TseI GCWGC 3 cut(s) 649, 725, 748
Tsp45I GTSAC 3 cut(s) 189, 259, 1109
TspDTI ATGAA 8 cut(s) 23, 180, 383, 414, 495, 503, 845, 1065
TspRI CASTG 1 cut(s) 868
Van91I CCANNNNNTGG 1 cut(s) 1066
VneI GTGCAC 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 909
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 2 cut(s) 173, 710
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.