Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Forward (+)

3799482 .. 3802105

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAACCCGAAGAACACCCCCACAGAGACCACCGCGAGTCCCGATTCCCGGGAACCATCTCCGCCTCATCAATTCGAAACCTCCACCCCGCAGCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCCCACCAAATGTTGAAAAAGCCCCTTTCACCTAACCCTCGCATCCAAGCCGACCACGATTCAGCTTTCGCTACTAAGCCGCTATCGCACCGTTCGATTTGCCCAAATCTCCGACCTCGCCTCTCGAACATTCCGGTGAAGGCTAGGGAACTGGCAAAGGATTTCGTTGTTGCTGGCACTGCATCAGCGTGCGTATATGGTGCTTGTGAGGCGATGTTCAAGCCTGACATGGCTATGGTGGGTATTCTTATCTCTTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0016020 GO:0019774 GO:0031090 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

133

Amino Acids

14.37

Weight (kDa)

8.91

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	4 cut(s)	33, 62, 89, 218
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	154, 358
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	91
AsuC2I	CCSGG	2 cut(s)	49, 50
AsuHPI	GGTGA	2 cut(s)	159, 286
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	64, 103
BcnI	CCSGG	2 cut(s)	49, 50
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	92, 218
BlsI	GCNGC	2 cut(s)	93, 219
Bme1390I	CCNGG	2 cut(s)	49, 50
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	49, 50
BmsI	GCATC	2 cut(s)	189, 329
Bpu14I	TTCGAA	1 cut(s)	75
BpuMI	CCSGG	2 cut(s)	49, 50
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	49, 272
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	33, 62, 89, 218
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	313, 328
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 317, 347
BstSCI	CCNGG	2 cut(s)	47, 48
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	313, 328
Cfr9I	CCCGGG	1 cut(s)	48
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	9 cut(s)	94, 128, 160, 188, 203, 217, 281, 361, 371
CviKI_1	RGCY	9 cut(s)	94, 128, 160, 188, 203, 217, 281, 361, 371
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	48
FaeI	CATG	1 cut(s)	370
FaiI	YATR	4 cut(s)	334, 336, 368, 374
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	92, 218
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	92, 218
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	92, 218
HapII	CCGG	2 cut(s)	49, 272
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	3 cut(s)	37, 44, 197
HpaII	CCGG	2 cut(s)	49, 272
HphI	GGTGA	2 cut(s)	159, 286
Hpy188I	TCNGA	2 cut(s)	251, 401
Hpy188III	TCNNGA	2 cut(s)	41, 262
HpyAV	CCTTC	2 cut(s)	129, 271
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 317, 347
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	396
LpnPI	CCDG	5 cut(s)	62, 275, 285, 297, 375
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	189, 329
MaeI	CTAG	1 cut(s)	282
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	2 cut(s)	22, 114
MluCI	AATT	2 cut(s)	71, 134
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	75, 91, 186, 264, 269, 340
MslI	CAYNNNNRTG	3 cut(s)	272, 325, 371
MspI	CCGG	2 cut(s)	49, 272
MspR9I	CCNGG	2 cut(s)	49, 50
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	223, 317, 347
NciI	CCSGG	2 cut(s)	49, 50
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	44, 197
PkrI	GCNGC	2 cut(s)	93, 219
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	54
RseI	CAYNNNNRTG	3 cut(s)	272, 325, 371
SatI	GCNGC	2 cut(s)	92, 218
Sau3AI	GATC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	49, 50
SetI	ASST	4 cut(s)	83, 172, 205, 256
SfaNI	GCATC	2 cut(s)	189, 329
SfuI	TTCGAA	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	50
SmiMI	CAYNNNNRTG	3 cut(s)	272, 325, 371
Sse9I	AATT	2 cut(s)	71, 134
SsiI	CCGC	4 cut(s)	33, 62, 89, 218
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	47, 48
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	75, 233, 263
TasI	AATT	2 cut(s)	71, 134
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	44, 197
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	125
TspMI	CCCGGG	1 cut(s)	48
TspRI	CASTG	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	48
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.