Rroxscaffold_7G00210610

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001197
Physical Location & Seq
Forward (+)
61116469 .. 61117695
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210610.1

Sequence Viewer

Length: 264 bp
ATGCATTTTCAGTTGAACAAAGATAGTAGATGGGATGAGATTGTATCCTCTTTGAAATTGAATTGGGGGAATCTCAATTTTCTGGATTTTCTTCTAACGCTTTATGCACTCTCTCTGTTTCATTATGAACATATTTACTTTTATAGGGGACCTAATAAATTGGCTTCACTGTTAGGTTTAGGAGTTAATCCAATAGGTTACCCAAGCCTTTTGGATACTACATTCATATGTTTGGCAAAATTTACGCAAACCGTGTGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

87

Amino Acids

10.15

Weight (kDa)

6.8

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 239
AgsI TTSAA 3 cut(s) 16, 55, 61
ApoI RAATTY 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 149
AvaII GGWCC 1 cut(s) 149
BccI CCATC 1 cut(s) 24
BciVI GTATCC 2 cut(s) 55, 208
BfuI GTATCC 2 cut(s) 55, 208
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 150
BseGI GGATG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 171, 253
BstEII GGTNACC 1 cut(s) 197
BstF5I GGATG 1 cut(s) 40
BstPI GGTNACC 1 cut(s) 197
BsuI GTATCC 2 cut(s) 55, 208
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 149
CspCI CAANNNNNGTGG 1 cut(s) 236
CviJI RGCY 2 cut(s) 164, 207
CviKI_1 RGCY 2 cut(s) 164, 207
Eco47I GGWCC 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 6 cut(s) 105, 126, 132, 144, 227, 229
FaqI GGGAC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 227
FokI GGATG 1 cut(s) 47
HinfI GANTC 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 171, 253
HpyCH4V TGCA 2 cut(s) 4, 107
LpnPI CCDG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 1 cut(s) 83
MluCI AATT 5 cut(s) 56, 61, 76, 158, 239
MnlI CCTC 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 186, 262
MslI CAYNNNNRTG 1 cut(s) 226
NdeI CATATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 150
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
PspEI GGTNACC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 149
PspPPI RGGWCCY 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 226
SaqAI TTAA 2 cut(s) 186, 262
Sau96I GGNCC 1 cut(s) 149
SetI ASST 3 cut(s) 154, 178, 199
SgeI CNNG 2 cut(s) 95, 216
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 5 cut(s) 56, 61, 76, 158, 239
TaaI ACNGT 2 cut(s) 171, 253
TasI AATT 5 cut(s) 56, 61, 76, 158, 239
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 186, 262
Tru9I TTAA 2 cut(s) 186, 262
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 110, 141, 214
TspRI CASTG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.