Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

43279794 .. 43282399

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGAATGTGAGAGAGGACACCAGAGATGGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGTAAACTGATCAATCCCAATGTGCCCAATTCTGGGTTTCAGGGGAAAAGCATGTTTGACAGCTCTGATAATGAGAGTTTCTATGAAAGGCTAAGCAAGTTGAATGAGTCACTTGGGTACAATCTTGTCTTTGATGTCAGACAAACCAAACTGAATCTGCATCTCTTTTACAAGGAAGTCACTCTCAGGGGAGGCTTTAATCAGGTGAACAAAGATAGGAGATGGGATGAGATTGCATCCTCTTTGAAATTGGATGGGAGGAATCTCAATTATCCAGATATTCTTCTAAAGCTTTATGCACTCTTTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGAGAAAGTGGCTTCAACGCCAGATCTCACTATTGATATTGAGGATAACCCCCGAATGGAAATGAAGTGCACCAATCATTCATCTCAAATGGTAAGAAATGTTGAAGATGGGCCTGGAGAGAAGAAGATGCTCAAGGAGAGCTGTTCTCAATCAATGTCGACAGGTTCGGCGTCTGCAGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGATATGCACTCATCACCAGAAAACCAACTAGCAGTACCCGAAGCAGCACAGGAGCAGACCCCCCAGCTGCACTTGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAATTCAATCTAATAAAGGCCAGAATCTCCGACAAATGGCCAATGAAGCATGGAATCAGCTATCTGAGGCTGAGAAACAGCCCTTCCTTGAGCAAAGTATCAAGGAAAAGGAAAGCTTTGCTAACAAAGTGGCTGTTGATGATGAACAAAACCATGTCATGGAAAGTGCTGATTTGGAGAACAAGCAGGCTTCGCCGGATGGTGACTACCATGTGATTTTGGATCCAAGTGATGCAGCAAAATCTGTTGAGGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID

Protein Analysis

387

Amino Acids

43.91

Weight (kDa)

6.41

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	49 - 132	2.8e-11	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1060
AccI	GTMKAC	1 cut(s)	578
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	2 cut(s)	1118, 1131
AcoI	YGGCCR	2 cut(s)	31, 939
AcsI	RAATTY	1 cut(s)	903
AcyI	GRCGYC	1 cut(s)	590
AfaI	GTAC	3 cut(s)	194, 711, 807
AfiI	CCNNNNNNNGG	5 cut(s)	107, 108, 475, 937, 1060
AgsI	TTSAA	6 cut(s)	178, 322, 435, 524, 751, 908
AjnI	CCWGG	3 cut(s)	532, 809, 832
AloI	GAACNNNNNNTCC	2 cut(s)	760, 792
AluBI	AGCT	8 cut(s)	138, 367, 561, 643, 742, 788, 961, 1017
AluI	AGCT	8 cut(s)	138, 367, 561, 643, 742, 788, 961, 1017
Alw21I	GWGCWC	2 cut(s)	491, 841
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	1118, 1131
AoxI	GGCC	4 cut(s)	31, 530, 919, 939
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	4 cut(s)	643, 719, 742, 1136
ApoI	RAATTY	1 cut(s)	903
AspS9I	GGNCC	2 cut(s)	416, 530
AsuHPI	GGTGA	3 cut(s)	292, 681, 1115
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	2 cut(s)	102, 491
BalI	TGGCCA	2 cut(s)	33, 941
BamHI	GGATCC	1 cut(s)	1123
Bbv12I	GWGCWC	2 cut(s)	491, 841
BbvI	GCAGC	4 cut(s)	630, 729, 731, 1148
BccI	CCATC	5 cut(s)	23, 291, 323, 521, 1094
BciT130I	CCWGG	3 cut(s)	534, 811, 834
BciVI	GTATCC	1 cut(s)	843
BclI	TGATCA	1 cut(s)	84
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	843
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	5 cut(s)	43, 644, 720, 743, 1137
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	5 cut(s)	44, 645, 721, 744, 1138
Bme1390I	CCNGG	3 cut(s)	534, 811, 834
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	416, 530
BmiI	GGNNCC	2 cut(s)	417, 1125
BmrFI	CCNGG	3 cut(s)	534, 811, 834
BmsI	GCATC	5 cut(s)	244, 320, 537, 791, 1123
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
BpmI	CTGGAG	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	2 cut(s)	536, 1010
BsaHI	GRCGYC	1 cut(s)	590
BsaJI	CCNNGG	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 108, 475, 937, 1060
BseBI	CCWGG	3 cut(s)	534, 811, 834
BseDI	CCNNGG	1 cut(s)	809
BseGI	GGATG	5 cut(s)	307, 311, 334, 828, 1105
BseLI	CCNNNNNNNGG	5 cut(s)	107, 108, 475, 937, 1060
BseMII	CTCAG	6 cut(s)	42, 274, 411, 663, 957, 963
BseSI	GKGCMC	2 cut(s)	102, 491
BseXI	GCAGC	4 cut(s)	630, 729, 731, 1148
BseYI	CCCAGC	2 cut(s)	639, 738
BsgI	GTGCAG	2 cut(s)	629, 728
BshFI	GGCC	4 cut(s)	33, 532, 921, 941
BsiHKAI	GWGCWC	2 cut(s)	491, 841
BsiSI	CCGG	1 cut(s)	1097
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	5 cut(s)	107, 108, 475, 937, 1060
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	4 cut(s)	33, 532, 921, 941
Bsp1286I	GDGCHC	3 cut(s)	102, 491, 841
Bsp143I	GATC	4 cut(s)	36, 84, 442, 1123
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	4 cut(s)	33, 532, 921, 941
BspCNI	CTCAG	6 cut(s)	43, 273, 412, 662, 958, 964
BspLI	GGNNCC	2 cut(s)	417, 1125
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	2 cut(s)	1118, 1131
BssECI	CCNNGG	1 cut(s)	809
BssMI	GATC	4 cut(s)	36, 84, 442, 1123
BssNI	GRCGYC	1 cut(s)	590
Bst2UI	CCWGG	3 cut(s)	534, 811, 834
Bst4CI	ACNGT	1 cut(s)	798
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	1089
BstDEI	CTNAG	7 cut(s)	51, 167, 260, 420, 649, 966, 972
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	5 cut(s)	307, 311, 334, 828, 1105
BstKTI	GATC	4 cut(s)	39, 87, 445, 1126
BstMBI	GATC	4 cut(s)	36, 84, 442, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 617, 947, 1093
BstNI	CCWGG	3 cut(s)	534, 811, 834
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	3 cut(s)	532, 809, 832
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	2 cut(s)	102, 491
BstV1I	GCAGC	4 cut(s)	630, 729, 731, 1148
BstX2I	RGATCY	2 cut(s)	442, 1123
BstYI	RGATCY	2 cut(s)	442, 1123
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	4 cut(s)	33, 532, 921, 941
BtsCI	GGATG	5 cut(s)	307, 311, 334, 828, 1105
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
Cac8I	GCNNGC	1 cut(s)	1089
Cfr13I	GGNCC	2 cut(s)	416, 530
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	193, 710, 806
CviAII	CATG	5 cut(s)	127, 951, 1055, 1060, 1112
CviQI	GTAC	3 cut(s)	193, 710, 806
DdeI	CTNAG	7 cut(s)	51, 167, 260, 420, 649, 966, 972
DpnI	GATC	4 cut(s)	38, 86, 444, 1125
DpnII	GATC	4 cut(s)	36, 84, 442, 1123
EaeI	YGGCCR	2 cut(s)	31, 939
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	860
EcoO109I	RGGNCCY	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	860
EcoRII	CCWGG	3 cut(s)	532, 809, 832
FaeI	CATG	5 cut(s)	130, 954, 1058, 1063, 1115
FalI	AAGNNNNNCTT	2 cut(s)	1001, 1033
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	5 cut(s)	126, 950, 1054, 1059, 1111
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	5 cut(s)	43, 644, 720, 743, 1137
FokI	GGATG	5 cut(s)	298, 314, 341, 835, 1112
Fsp4HI	GCNGC	5 cut(s)	43, 644, 720, 743, 1137
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	5 cut(s)	43, 644, 720, 743, 1137
GsaI	CCCAGC	2 cut(s)	643, 742
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	4 cut(s)	33, 532, 921, 941
HapII	CCGG	1 cut(s)	1097
HgaI	GACGC	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	5 cut(s)	130, 954, 1058, 1063, 1115
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HindIII	AAGCTT	2 cut(s)	365, 1015
HinfI	GANTC	5 cut(s)	182, 229, 337, 925, 955
HpaII	CCGG	1 cut(s)	1097
HphI	GGTGA	3 cut(s)	292, 681, 1115
Hpy166II	GTNNAC	4 cut(s)	80, 283, 489, 579
Hpy188I	TCNGA	6 cut(s)	52, 142, 215, 652, 932, 967
Hpy188III	TCNNGA	2 cut(s)	350, 877
Hpy8I	GTNNAC	4 cut(s)	80, 283, 489, 579
HpyAV	CCTTC	1 cut(s)	994
HpyCH4III	ACNGT	1 cut(s)	798
HpyCH4V	TGCA	9 cut(s)	235, 311, 374, 489, 596, 646, 682, 745, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 617, 947, 1093
HpyF3I	CTNAG	7 cut(s)	51, 167, 260, 420, 649, 966, 972
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	5 cut(s)	130, 954, 1058, 1063, 1115
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	36, 84, 442, 1123
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	4 cut(s)	630, 729, 731, 1148
LweI	GCATC	5 cut(s)	244, 320, 537, 791, 1123
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	4 cut(s)	183, 253, 860, 1103
MalI	GATC	4 cut(s)	38, 86, 444, 1125
MboI	GATC	4 cut(s)	36, 84, 442, 1123
MboII	GAAGA	7 cut(s)	350, 536, 553, 556, 671, 763, 838
MflI	RGATCY	2 cut(s)	442, 1123
MhlI	GDGCHC	3 cut(s)	102, 491, 841
MlsI	TGGCCA	2 cut(s)	33, 941
MluCI	AATT	5 cut(s)	103, 323, 343, 903, 1156
MluNI	TGGCCA	2 cut(s)	33, 941
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	955
MnlI	CCTC	9 cut(s)	10, 260, 325, 327, 454, 759, 767, 961, 1144
Mox20I	TGGCCA	2 cut(s)	33, 941
MscI	TGGCCA	2 cut(s)	33, 941
MseI	TTAA	2 cut(s)	273, 896
Msp20I	TGGCCA	2 cut(s)	33, 941
MspA1I	CMGCKG	4 cut(s)	42, 643, 742, 788
MspI	CCGG	1 cut(s)	1097
MspR9I	CCNGG	3 cut(s)	534, 811, 834
MvaI	CCWGG	3 cut(s)	534, 811, 834
MwoI	GCNNNNNNNGC	4 cut(s)	39, 617, 947, 1093
NdeII	GATC	4 cut(s)	36, 84, 442, 1123
NlaIII	CATG	5 cut(s)	130, 954, 1058, 1063, 1115
NlaIV	GGNNCC	2 cut(s)	417, 1125
NmuCI	GTSAC	3 cut(s)	183, 253, 1103
NspI	RCATGY	1 cut(s)	130
PfeI	GAWTC	4 cut(s)	229, 337, 925, 955
PflMI	CCANNNNNTGG	1 cut(s)	1060
PkrI	GCNGC	5 cut(s)	44, 645, 721, 744, 1138
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	532, 809, 832
PspEI	GGTNACC	1 cut(s)	860
PspFI	CCCAGC	2 cut(s)	639, 738
PspGI	CCWGG	3 cut(s)	532, 809, 832
PspN4I	GGNNCC	2 cut(s)	417, 1125
PspPI	GGNCC	2 cut(s)	416, 530
PspPPI	RGGWCCY	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	442, 1123
PvuII	CAGCTG	3 cut(s)	643, 742, 788
RsaI	GTAC	3 cut(s)	194, 711, 807
RsaNI	GTAC	3 cut(s)	193, 710, 806
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	273, 896
SatI	GCNGC	5 cut(s)	43, 644, 720, 743, 1137
Sau3AI	GATC	4 cut(s)	36, 84, 442, 1123
Sau96I	GGNCC	2 cut(s)	416, 530
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	3 cut(s)	534, 811, 834
SduI	GDGCHC	3 cut(s)	102, 491, 841
SfaNI	GCATC	5 cut(s)	244, 320, 537, 791, 1123
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	551, 989
SmoI	CTYRAG	2 cut(s)	551, 989
Sse9I	AATT	5 cut(s)	103, 323, 343, 903, 1156
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	3 cut(s)	532, 809, 832
TaaI	ACNGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	578, 841
TasI	AATT	5 cut(s)	103, 323, 343, 903, 1156
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	4 cut(s)	229, 337, 925, 955
Tru1I	TTAA	2 cut(s)	273, 896
Tru9I	TTAA	2 cut(s)	273, 896
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	3 cut(s)	183, 253, 1103
TseI	GCWGC	4 cut(s)	643, 719, 742, 1136
Tsp45I	GTSAC	3 cut(s)	183, 253, 1103
TspDTI	ATGAA	8 cut(s)	174, 377, 408, 489, 497, 839, 960, 1059
TspRI	CASTG	1 cut(s)	862
Van91I	CCANNNNNTGG	1 cut(s)	1060
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	903
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	578
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.