Rroxscaffold_6G00422070

ARID/BRIGHT DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001197
Physical Location & Seq
Reverse (-)
43082491 .. 43086885
4395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422070.1

Sequence Viewer

Length: 1455 bp
ATGCCAATGAAGAATGTGAGAGAGGACACCAGAGATAGCCAGATCAGCGGCTTCTCTGAGTTCTCTAAACCACAATGCTCTGGTAAACTGATCAATCCCAATGTGCCCAATTCTGGGTTTCAGGGGAAAAGCGTGTTTGACAGCTCTGATAGTGAGAGTTTCTATGAAAGGCTAGGCAAGTTGAATGAGTCACTTGGGTACAATCTTGTCTTTGATGTCAGACAAACCAAACTGAATTTGCATCTGTTTTACAAGGAAGTAACTCTCAGGGGAGGCTTTAATCAGGTGAACAAAGATAGGAGATGGGAGGAGATTGCATCCTCTTTGAAATTGGATGGGGGGAATCTCAATTATCCAGATATTCTTCTAAAGCTTTATGCACTCTTTCTGTTTCATTATGAACAGATTTACTTTTATAGGGGACCTGAGAAAGTGGCTTCAACGCCAGATCTCACTATTGATATTGAGGATAGCCCCCGAATGGAAATGAAGTGCACCAATCATTCATCTCAAATGGTAACAAATGTTGAAGATGGGCCTGGAGAGAAGAAGATTCTCAAGGAGAGCTGTTCTCAATCAATGTCGACAGGTTCGGCGTCTGCAGAAAAACAATCAGCACCAGAAGCAGAACAGAAGCATATCCCCCAGCTGCACTCAGAGAAAGAAGAGATATGGACAAAAGACATGCACTCATCAGCAGAAAACCAACTAGCAGTACCCGAAGCAGCACAGGAGCAGACCCCCCAGCTGCACTTGAAGAAAAAAGAGATGAGGAAAAGAGGTTCAGCATCAGCTGAAAAACAGTTGGCTGTACCCAGGAAAAAAGGGATGAAGAAGCCAGGTGCTCGACAAGGGATACGCAGTGGTTACCACATCTTTATCAAGACAGAATGTGGGAGATTAAAAAAAATTCAATCTAATAAAGGCCAGAATCTCCGACAAATGGCCAATGATGCATGGAATCAGCTATCTGAGGCTGAGAAACAGGACAATCAGTCATTTATCATCAAGGAGCAGAGTATGTTAAGTTGCAAGAGTAACAGAAAAAGGTTGATTGCTGCTAATGTTTCAAGTGATGTTCACTCTCGGAGTGCTCATATGTCTATAAAAGTTGCTCCCTTTTCCTTGCAGCCCTTCCTTGAGCAAAGTATCAAGGAAAAGGAAAGCTTTGCTAACAAAGTGGCTGTTGATGATGAACAAAACCATGTCATGGAAAGTGCTGATTTGGAGAACAAGCAGGCTTCGCCGGATGGTGACTACCATGTGATTTTGGATCCAAGTGATGCAGAAAAATCTATTGAGGCTAATATTTTTGCTGGTAAGGCATCTGCCATAGCATTTGAATCTGTCCTCGGAGGTACGGAGACCGGAGTTAATGAGGATATGAGTCGAACTACGATGATCTTTGTCTTTCCGATTAGATTACTTGCTGCTGATAGAGCTTATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

484

Amino Acids

54.4

Weight (kDa)

6.89

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 51 - 134 9.2e-11 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1210
AccI GTMKAC 1 cut(s) 584
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 1268, 1281
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 3 cut(s) 235, 909, 1449
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 4 cut(s) 200, 717, 813, 1360
AfiI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1210
AgsI TTSAA 8 cut(s) 184, 328, 441, 530, 757, 914, 1071, 1343
AhdI GACNNNNNGTC 1 cut(s) 994
AjnI CCWGG 3 cut(s) 538, 815, 838
AloI GAACNNNNNNTCC 2 cut(s) 766, 798
AluBI AGCT 9 cut(s) 144, 373, 567, 649, 748, 794, 967, 1167, 1442
AluI AGCT 9 cut(s) 144, 373, 567, 649, 748, 794, 967, 1167, 1442
Alw21I GWGCWC 3 cut(s) 497, 847, 1096
Alw26I GTCTC 1 cut(s) 1358
Alw44I GTGCAC 1 cut(s) 493
AlwI GGATC 2 cut(s) 1268, 1281
AoxI GGCC 3 cut(s) 536, 925, 945
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 6 cut(s) 649, 725, 748, 1058, 1129, 1430
ApoI RAATTY 3 cut(s) 235, 909, 1449
AspS9I GGNCC 2 cut(s) 422, 536
AsuHPI GGTGA 2 cut(s) 298, 1265
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 2 cut(s) 108, 497
BalI TGGCCA 1 cut(s) 947
BamHI GGATCC 1 cut(s) 1273
Bbv12I GWGCWC 3 cut(s) 497, 847, 1096
BbvI GCAGC 6 cut(s) 636, 735, 737, 1045, 1141, 1417
BccI CCATC 4 cut(s) 297, 329, 527, 1244
BciT130I CCWGG 3 cut(s) 540, 817, 840
BciVI GTATCC 1 cut(s) 849
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 1358
BfaI CTAG 2 cut(s) 173, 710
BfmI CTRYAG 1 cut(s) 600
BfuI GTATCC 1 cut(s) 849
BglII AGATCT 1 cut(s) 448
BisI GCNGC 7 cut(s) 49, 650, 726, 749, 1059, 1130, 1431
BlsI GCNGC 7 cut(s) 50, 651, 727, 750, 1060, 1131, 1432
Bme1390I CCNGG 3 cut(s) 540, 817, 840
Bme18I GGWCC 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 994
BmgT120I GGNCC 2 cut(s) 422, 536
BmiI GGNNCC 2 cut(s) 423, 1275
BmrFI CCNGG 3 cut(s) 540, 817, 840
BmsI GCATC 6 cut(s) 250, 326, 797, 943, 1273, 1334
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 542, 1160
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 1358
BsaJI CCNNGG 2 cut(s) 815, 1351
BsaWI WCCGGW 1 cut(s) 1367
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1210
BseBI CCWGG 3 cut(s) 540, 817, 840
BseDI CCNNGG 2 cut(s) 815, 1351
BseGI GGATG 4 cut(s) 317, 340, 834, 1255
BseLI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1210
BseMII CTCAG 6 cut(s) 48, 280, 417, 669, 963, 969
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 2 cut(s) 108, 497
BseXI GCAGC 6 cut(s) 636, 735, 737, 1045, 1141, 1417
BseYI CCCAGC 2 cut(s) 645, 744
BsgI GTGCAG 2 cut(s) 635, 734
BshFI GGCC 3 cut(s) 538, 927, 947
BsiHKAI GWGCWC 3 cut(s) 497, 847, 1096
BsiSI CCGG 2 cut(s) 1247, 1368
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 5 cut(s) 113, 114, 481, 943, 1210
BsmAI GTCTC 1 cut(s) 1358
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 3 cut(s) 538, 927, 947
Bso31I GGTCTC 1 cut(s) 1358
Bsp1286I GDGCHC 4 cut(s) 108, 497, 847, 1096
Bsp143I GATC 5 cut(s) 42, 90, 448, 1273, 1401
BspACI CCGC 1 cut(s) 48
BspANI GGCC 3 cut(s) 538, 927, 947
BspCNI CTCAG 6 cut(s) 49, 279, 418, 668, 964, 970
BspLI GGNNCC 2 cut(s) 423, 1275
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 2 cut(s) 1268, 1281
BspTNI GGTCTC 1 cut(s) 1358
BssECI CCNNGG 2 cut(s) 815, 1351
BssMI GATC 5 cut(s) 42, 90, 448, 1273, 1401
BssNI GRCGYC 1 cut(s) 596
Bst2UI CCWGG 3 cut(s) 540, 817, 840
Bst4CI ACNGT 1 cut(s) 804
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 1239
BstDEI CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
BstEII GGTNACC 1 cut(s) 866
BstF5I GGATG 4 cut(s) 317, 340, 834, 1255
BstKTI GATC 5 cut(s) 45, 93, 451, 1276, 1404
BstMAI GTCTC 1 cut(s) 1358
BstMBI GATC 5 cut(s) 42, 90, 448, 1273, 1401
BstMWI GCNNNNNNNGC 6 cut(s) 45, 623, 953, 1243, 1322, 1439
BstNI CCWGG 3 cut(s) 540, 817, 840
BstNSI RCATGY 1 cut(s) 688
BstPI GGTNACC 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 538, 815, 838
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 2 cut(s) 108, 497
BstV1I GCAGC 6 cut(s) 636, 735, 737, 1045, 1141, 1417
BstX2I RGATCY 2 cut(s) 448, 1273
BstYI RGATCY 2 cut(s) 448, 1273
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 3 cut(s) 538, 927, 947
BtsCI GGATG 4 cut(s) 317, 340, 834, 1255
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 868
Cac8I GCNNGC 1 cut(s) 1239
Cfr13I GGNCC 2 cut(s) 422, 536
CseI GACGC 1 cut(s) 585
Csp6I GTAC 4 cut(s) 199, 716, 812, 1359
CviAII CATG 5 cut(s) 685, 957, 1205, 1210, 1262
CviQI GTAC 4 cut(s) 199, 716, 812, 1359
DdeI CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
DpnI GATC 5 cut(s) 44, 92, 450, 1275, 1403
DpnII GATC 5 cut(s) 42, 90, 448, 1273, 1401
DriI GACNNNNNGTC 1 cut(s) 994
EaeI YGGCCR 1 cut(s) 945
Eam1104I CTCTTC 1 cut(s) 660
Eam1105I GACNNNNNGTC 1 cut(s) 994
EarI CTCTTC 1 cut(s) 660
Eco31I GGTCTC 1 cut(s) 1358
Eco47I GGWCC 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 866
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 866
EcoRII CCWGG 3 cut(s) 538, 815, 838
EcoT22I ATGCAT 1 cut(s) 958
FaeI CATG 5 cut(s) 688, 960, 1208, 1213, 1265
FalI AAGNNNNNCTT 2 cut(s) 1151, 1183
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 684, 956, 1204, 1209, 1261
FauNDI CATATG 1 cut(s) 1098
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 7 cut(s) 49, 650, 726, 749, 1059, 1130, 1431
FokI GGATG 4 cut(s) 304, 347, 841, 1262
Fsp4HI GCNGC 7 cut(s) 49, 650, 726, 749, 1059, 1130, 1431
FspBI CTAG 2 cut(s) 173, 710
GluI GCNGC 7 cut(s) 49, 650, 726, 749, 1059, 1130, 1431
GsaI CCCAGC 2 cut(s) 649, 748
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 538, 927, 947
HapII CCGG 2 cut(s) 1247, 1368
HgaI GACGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 5 cut(s) 688, 960, 1208, 1213, 1265
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 2 cut(s) 371, 1165
HinfI GANTC 7 cut(s) 188, 343, 553, 931, 961, 1343, 1387
HpaII CCGG 2 cut(s) 1247, 1368
HphI GGTGA 2 cut(s) 298, 1265
Hpy166II GTNNAC 5 cut(s) 86, 289, 495, 585, 1081
Hpy188I TCNGA 9 cut(s) 58, 148, 221, 658, 938, 973, 1089, 1355, 1416
Hpy188III TCNNGA 2 cut(s) 356, 883
Hpy8I GTNNAC 5 cut(s) 86, 289, 495, 585, 1081
HpyAV CCTTC 1 cut(s) 1144
HpyCH4III ACNGT 1 cut(s) 804
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 623, 953, 1243, 1322, 1439
HpyF3I CTNAG 6 cut(s) 57, 266, 426, 655, 972, 978
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 5 cut(s) 688, 960, 1208, 1213, 1265
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 42, 90, 448, 1273, 1401
LmnI GCTCC 3 cut(s) 733, 1012, 1120
Lsp1109I GCAGC 6 cut(s) 636, 735, 737, 1045, 1141, 1417
LweI GCATC 6 cut(s) 250, 326, 797, 943, 1273, 1334
MaeI CTAG 2 cut(s) 173, 710
MaeIII GTNAC 6 cut(s) 189, 259, 517, 866, 1037, 1253
MalI GATC 5 cut(s) 44, 92, 450, 1275, 1403
MboI GATC 5 cut(s) 42, 90, 448, 1273, 1401
MboII GAAGA 8 cut(s) 22, 356, 542, 559, 562, 677, 769, 844
MflI RGATCY 2 cut(s) 448, 1273
MhlI GDGCHC 4 cut(s) 108, 497, 847, 1096
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 6 cut(s) 109, 235, 329, 349, 909, 1449
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 2 cut(s) 197, 1396
MmeI TCCRAC 1 cut(s) 961
Mox20I TGGCCA 1 cut(s) 947
Mph1103I ATGCAT 1 cut(s) 958
MscI TGGCCA 1 cut(s) 947
MseI TTAA 5 cut(s) 279, 902, 1025, 1374, 1453
Msp20I TGGCCA 1 cut(s) 947
MspA1I CMGCKG 4 cut(s) 48, 649, 748, 794
MspI CCGG 2 cut(s) 1247, 1368
MspR9I CCNGG 3 cut(s) 540, 817, 840
MvaI CCWGG 3 cut(s) 540, 817, 840
MwoI GCNNNNNNNGC 6 cut(s) 45, 623, 953, 1243, 1322, 1439
NdeI CATATG 1 cut(s) 1098
NdeII GATC 5 cut(s) 42, 90, 448, 1273, 1401
NlaIII CATG 5 cut(s) 688, 960, 1208, 1213, 1265
NlaIV GGNNCC 2 cut(s) 423, 1275
NmuCI GTSAC 2 cut(s) 189, 1253
NsiI ATGCAT 1 cut(s) 958
NspI RCATGY 1 cut(s) 688
PfeI GAWTC 5 cut(s) 343, 553, 931, 961, 1343
PflMI CCANNNNNTGG 1 cut(s) 1210
PkrI GCNGC 7 cut(s) 50, 651, 727, 750, 1060, 1131, 1432
PleI GAGTC 2 cut(s) 196, 1395
PpsI GAGTC 2 cut(s) 196, 1395
PpuMI RGGWCCY 1 cut(s) 422
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 538, 815, 838
PspEI GGTNACC 1 cut(s) 866
PspFI CCCAGC 2 cut(s) 645, 744
PspGI CCWGG 3 cut(s) 538, 815, 838
PspN4I GGNNCC 2 cut(s) 423, 1275
PspPI GGNCC 2 cut(s) 422, 536
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 448, 1273
PvuII CAGCTG 3 cut(s) 649, 748, 794
RsaI GTAC 4 cut(s) 200, 717, 813, 1360
RsaNI GTAC 4 cut(s) 199, 716, 812, 1359
SalI GTCGAC 1 cut(s) 583
SaqAI TTAA 5 cut(s) 279, 902, 1025, 1374, 1453
SatI GCNGC 7 cut(s) 49, 650, 726, 749, 1059, 1130, 1431
Sau3AI GATC 5 cut(s) 42, 90, 448, 1273, 1401
Sau96I GGNCC 2 cut(s) 422, 536
SchI GAGTC 2 cut(s) 197, 1396
ScrFI CCNGG 3 cut(s) 540, 817, 840
SduI GDGCHC 4 cut(s) 108, 497, 847, 1096
SfaNI GCATC 6 cut(s) 250, 326, 797, 943, 1273, 1334
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 557, 1139
SmoI CTYRAG 2 cut(s) 557, 1139
Sse9I AATT 6 cut(s) 109, 235, 329, 349, 909, 1449
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 1309
SspMI CTAG 2 cut(s) 173, 710
StyD4I CCNGG 3 cut(s) 538, 815, 838
TaaI ACNGT 1 cut(s) 804
TaqI TCGA 3 cut(s) 584, 847, 1390
TasI AATT 6 cut(s) 109, 235, 329, 349, 909, 1449
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 5 cut(s) 343, 553, 931, 961, 1343
Tru1I TTAA 5 cut(s) 279, 902, 1025, 1374, 1453
Tru9I TTAA 5 cut(s) 279, 902, 1025, 1374, 1453
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 2 cut(s) 189, 1253
TseI GCWGC 6 cut(s) 649, 725, 748, 1058, 1129, 1430
Tsp45I GTSAC 2 cut(s) 189, 1253
TspDTI ATGAA 8 cut(s) 23, 180, 383, 414, 495, 503, 845, 1209
TspGWI ACGGA 1 cut(s) 1376
TspRI CASTG 1 cut(s) 868
Van91I CCANNNNNTGG 1 cut(s) 1210
VneI GTGCAC 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 3 cut(s) 235, 909, 1449
XceI RCATGY 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 2 cut(s) 173, 710
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.