Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001197

Physical Location & Seq

Genomic Coordinates Reverse (-)

46261521 .. 46261790

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAACCCGAAGAACACCCCCACAGAGACCACCGGCGAGTCCCGATTCCCGGGAACCATCTCCGCCTCATCTATTCGAAACCTCCACCCCGATCCATCTCAACCAAGCACGGAAAATCCTTCTTCAGCCCCAAAATTGCCCCACCAAATGTCGAAAAAGCCCTTTTCACCTAACCCTTACATCCAAGCCGACCACGATTCGCCTTTCGCTGCCAAGCCGCTACCAAGACCGTTCGATTTGCCCAAATCTCCAACCCTCCGCCGCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005873 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0007017 GO:0007018 GO:0007049 GO:0008150 GO:0008283 GO:0008574 GO:0009987 GO:0015630 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0051179 GO:0051234 GO:0097159 GO:1901363 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

89

Amino Acids

9.76

Weight (kDa)

9.87

Isoelectric Point (pI)

81.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001197)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580 FvH4_6g07580
malus_domestica	MD04G1192900.v1.1 MD12G1204900.v1.1 MD12G1205000.v1.1
prunus_persica	Prupe.6G312100_v2.0.a1 Prupe.6G312100_v2.0.a1 Prupe.8G133200_v2.0.a1
pyrus_communis	pycom04g17020
rosa_chinensis	RchiOBHm_Chr2g0141791 RchiOBHm_Chr3g0457251 RchiOBHm_Chr4g0385001 RchiOBHm_Chr4g0403641 RchiOBHm_Chr7g0230301
rosa_laevigata	RLG00000025239 RLG00000028879
rosa_multiflora	Rmu_co8006356.1_g000001 Rmu_sc0001700.1_g000022 Rmu_sc0024999.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021260 Rroxscaffold_2G00110110 Rroxscaffold_2G00138210 Rroxscaffold_5G00336070 Rroxscaffold_5G00364990 Rroxscaffold_5G00371660 Rroxscaffold_6G00422040 Rroxscaffold_6G00422070 Rroxscaffold_7G00210610
rosa_rugosa	Rorug03G0019600 Rorug04G0448000 Rorug07G0240100.1
rosa_samantha	Rh2AG158300 Rh2AG504600 Rh2CG490600 Rh2DG163500 Rh2DG673200 Rh3AG079500 Rh3BG081200 Rh3CG081600 Rh3CG370900 Rh3DG083200 Rh4DG031800 Rh4DG287000 Rh5DG474000 Rh7AG251600 Rh7AG400700 Rh7AG488300 Rh7CG268400
rosa_wichuraiana	Rw3G006850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	264
AciI	CCGC	4 cut(s)	63, 218, 259, 262
AclWI	GGATC	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	209
AsuC2I	CCSGG	2 cut(s)	50, 51
AsuHPI	GGTGA	1 cut(s)	159
AsuII	TTCGAA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	65, 103
BcnI	CCSGG	2 cut(s)	50, 51
BcoDI	GTCTC	1 cut(s)	20
BisI	GCNGC	3 cut(s)	210, 218, 262
BlsI	GCNGC	3 cut(s)	211, 219, 263
Bme1390I	CCNGG	2 cut(s)	50, 51
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	50, 51
Bpu14I	TTCGAA	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	50, 51
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	33, 50
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	4 cut(s)	63, 218, 259, 262
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	94
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	48, 49
BstV1I	GCAGC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	32
Cfr9I	CCCGGG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	128, 160, 188, 217
CviKI_1	RGCY	4 cut(s)	128, 160, 188, 217
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EciI	GGCGGA	2 cut(s)	52, 248
Eco31I	GGTCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	49
FaqI	GGGAC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	210, 218, 262
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	210, 218, 262
GluI	GCNGC	3 cut(s)	210, 218, 262
HapII	CCGG	2 cut(s)	33, 50
HinfI	GANTC	3 cut(s)	38, 45, 197
HpaII	CCGG	2 cut(s)	33, 50
HphI	GGTGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	2 cut(s)	46, 63
Lsp1109I	GCAGC	1 cut(s)	196
MalI	GATC	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	264
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	22, 114
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	3 cut(s)	76, 92, 266
MspI	CCGG	2 cut(s)	33, 50
MspR9I	CCNGG	2 cut(s)	50, 51
NciI	CCSGG	2 cut(s)	50, 51
NdeII	GATC	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	45, 197
PkrI	GCNGC	3 cut(s)	211, 219, 263
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	55
SatI	GCNGC	3 cut(s)	210, 218, 262
Sau3AI	GATC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	50, 51
SetI	ASST	2 cut(s)	84, 172
SfuI	TTCGAA	1 cut(s)	76
SgrAI	CRCCGGYG	1 cut(s)	32
SmaI	CCCGGG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	4 cut(s)	63, 218, 259, 262
StyD4I	CCNGG	2 cut(s)	48, 49
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	76, 152, 234
TasI	AATT	1 cut(s)	134
TauI	GCSGC	2 cut(s)	220, 264
TfiI	GAWTC	2 cut(s)	45, 197
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	125
TspMI	CCCGGG	1 cut(s)	49
XmaI	CCCGGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.